-
1
-
-
15944393188
-
The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments
-
4-8 January 2005; Hawaii Edited by: Altman, RB. World Press
-
Orchard S, Montecchi-Palazzi L, Hermjakob H, Apweiler R: The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments. In Proceedings of the Pacific Symposium on Biocomputing: 4-8 January 2005; Hawaii Edited by: Altman, RB. World Press; 2005:186-96.
-
(2005)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 186-196
-
-
Orchard, S.1
Montecchi-Palazzi, L.2
Hermjakob, H.3
Apweiler, R.4
-
2
-
-
84874663517
-
-
Open Biomedical Ontologies
-
Open Biomedical Ontologies [http://obo.sourceforge.net/]
-
-
-
-
3
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium: Gene Ontology: tool for the unification of biology. Nat Genet 2000, 25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
-
4
-
-
84874655118
-
-
The Gene Ontology
-
The Gene Ontology [http://www.geneontology.org/]
-
-
-
-
5
-
-
0028230073
-
Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches
-
1994, Apr 13
-
Lowe HJ, Barnett GO: Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches. JAMA 1994, 271(14):1103-1108. 1994, Apr 13
-
(1994)
JAMA
, vol.271
, Issue.14
, pp. 1103-1108
-
-
Lowe, H.J.1
Barnett, G.O.2
-
6
-
-
84874659574
-
-
Medical Subject Headings
-
Medical Subject Headings [http://www.nlm.nih.gov/mesh/]
-
-
-
-
7
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S: The generic genome browser: a building block for a model organism system database. Genome Res 2002, 12(10):1599-610.
-
(2002)
Genome Res
, vol.12
, Issue.10
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
Lewis, S.11
-
8
-
-
84874648497
-
-
The Genomics Unified Schema
-
The Genomics Unified Schema [http://www.gusdb.org/]
-
-
-
-
9
-
-
84874661670
-
-
QuickGO GO Browser
-
QuickGO GO Browser [http://www.ebi.ac.uk/ego/]
-
-
-
-
10
-
-
84874648586
-
-
Gramene Gene, Plant and Trait Ontology Database
-
Gramene Gene, Plant and Trait Ontology Database [http:// www.gramene.org/ plant_ontology/]
-
-
-
-
11
-
-
84874652119
-
-
The National Center for Biomedical Ontology
-
The National Center for Biomedical Ontology [http//bioontology.org/]
-
-
-
-
12
-
-
0031981002
-
The Unified Medical Language System
-
Humphreys BL, Lindberg DA, Schoolman HM, Barnett GO: The Unified Medical Language System. JAMIA 1998, 5:1-11.
-
(1998)
JAMIA
, vol.5
, pp. 1-11
-
-
Humphreys, B.L.1
Lindberg, D.A.2
Schoolman, H.M.3
Barnett, G.O.4
-
13
-
-
84874667770
-
-
DAS/2 RFCs
-
DAS/2 RFCs [http://www.biodas.org/RFCs/]
-
-
-
-
14
-
-
2942547885
-
The distributed annotation system
-
Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L: The distributed annotation system. BMC Bioinform 2001, 2:7.
-
(2001)
BMC Bioinform
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
15
-
-
84874654869
-
-
Development DAS2 Server Ontology Query
-
Development DAS2 Server Ontology Query [http://das.bio packages.net/das/ ontology/obo/l/ontology].
-
-
-
-
16
-
-
9244247410
-
The BioMOBY project explores open-source, simple, extensible protocols for enabling biological database interoperability
-
Wilkinson MD, Gessler DD, Farmer A, Stein L: The BioMOBY project explores open-source, simple, extensible protocols for enabling biological database interoperability. Proc Virt Conf Genom and Bioinf 2003, 3:16-26.
-
(2003)
Proc Virt Conf Genom and Bioinf
, vol.3
, pp. 16-26
-
-
Wilkinson, M.D.1
Gessler, D.D.2
Farmer, A.3
Stein, L.4
-
17
-
-
84874651051
-
-
The BioMOBY Central registry
-
The BioMOBY Central registry [http://mobycentral.icapture. ubc.ca/ cgi-bin/MOBY05/mobycentral.pl].
-
-
-
-
18
-
-
84874666113
-
-
Open Biological Database Access (OBDA)
-
Open Biological Database Access (OBDA) [http://obda.open-bio.org/]
-
-
-
-
19
-
-
84874653851
-
-
ObjectRelationalBridge
-
ObjectRelationalBridge [http://db.apache.org/ojb/]
-
-
-
-
20
-
-
84874662048
-
-
Apache Lucene
-
Apache Lucene [http://lucene.apache.org/java/docs/]
-
-
-
-
21
-
-
84874667129
-
-
Apache AXIS
-
Apache AXIS [http://ws.apache.org/axis/]
-
-
-
-
22
-
-
84874652003
-
-
The PRIDE SourceForge Repository
-
The PRIDE SourceForge Repository [http://sourceforge.net/ projects/ pride-proteome/]
-
-
-
-
23
-
-
84874666312
-
-
Current ontology List at the OLS
-
Current ontology List at the OLS [http://www.ebi.ac.uk/ontol ogy-lookup/ ontology.List.do]
-
-
-
-
24
-
-
84874651859
-
-
The Web Ontology Language
-
The Web Ontology Language [http://www.w3.org/2004/OWL/]
-
-
-
-
25
-
-
0042622133
-
NEWT, a new taxonomy portal
-
Phan IQ, Pilbout SF, Fleischmann W, Bairoch A. NEWT, a new taxonomy portal. Nucl Acids Res 2003, 31(13):3822-3823.
-
(2003)
Nucl Acids Res
, vol.31
, Issue.13
, pp. 3822-3823
-
-
Phan, I.Q.1
Pilbout, S.F.2
Fleischmann, W.3
Bairoch, A.4
-
26
-
-
23944526367
-
PRIDE: The PRoteomics IDEntifications database
-
Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, States D, Gevaert K, Vandekerckhove J, Apweiler R: PRIDE: The PRoteomics IDEntifications database. Proteomics 2005, 5(13):3537-3545.
-
(2005)
Proteomics
, vol.5
, Issue.13
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
Taylor, C.5
States, D.6
Gevaert, K.7
Vandekerckhove, J.8
Apweiler, R.9
-
27
-
-
84874648166
-
PRIDE: A public repository of protein and peptide identifications for the proteomics community
-
in press
-
Jones P, Cote RG, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H, Apweiler R: PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucl Acids Res in press.
-
Nucl Acids Res
-
-
Jones, P.1
Cote, R.G.2
Martens, L.3
Quinn, A.F.4
Taylor, C.F.5
Derache, W.6
Hermjakob, H.7
Apweiler, R.8
-
28
-
-
9144248312
-
IntAct - An open source molecular interaction database
-
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R: IntAct - an open source molecular interaction database. Nucl Acids Res 2004, 32:D452-D455.
-
(2004)
Nucl Acids Res
, vol.32
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
Margalit, H.11
Armstrong, J.12
Bairoch, A.13
Cesareni, G.14
Sherman, D.15
Apweiler, R.16
|