Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences

Journal of Plant Research

Volumn 120, Issue 4, 2007, Pages 569-574

  Guillon, Jean Michel ^a  

^a UNIVERSITÉ PARIS SUD   (France)

Author keywords

Equisetum; Evolution; Horsetail; Phylogeny

Indexed keywords

EQUISETALES; EQUISETUM; EQUISETUM BOGOTENSE; SPHENOPSIDA;

EID: 34547327967     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-007-0088-x     Document Type: Article

References (33)

1. Alfaro ME, Zoller S, Lutzoni F (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255-266
2. Des Marais DL, Smith AR, Britton DM, Pryer KM (2003) Phylogenetic relationships and evolution of extant horsetails, Equisetum, based on chloroplast DNA sequence data (rbcL and trnL-F), Int J Plant Sci 164:737-751
3. Duckett JG (1973) Comparative morphology of the gametophytes of the genus Equisetum, subgenus Equisetum. Bot J Linn Soc 66:1-22
4. Duckett JG (1979) An experimental study of the reproductive biology and hybridization in the European and North American species of Equisetum. Bot J Linn Soc 79:205-229
5. Farris JS, Källersjo AG, Kluge AG, Bult C (1995) Testing significance of incongruence. Cladistics 10:315-319
6. Guillon J-M (2004) Phylogeny of horsetails (Equisetum) based on the chloroplast rps4 gene and adjacent noncoding sequences. Syst Bot 29:251-259
7. Hauke RL (1963) A taxonomical monograph of the genus Equisetum subgenus Hippochaete. Beheifte zur Nova Hedwigia 8:1-123
8. Hauke RL (1968) Gametangia of Equisetum bogotense. Bull Torrey Bot Club 95:341-345
9. Hauke RL (1969) Gametophyte development in Latin American horsetails. Bull Torrey Bot Club 96:568-577
10. Hauke RL (1978) A taxonomic monograph of Equisetum subgenus Equisetum. Nova Hedwigia 30:385-455
11. Hauke RL (1985) Gametophytes of Equisetum giganteum. Am Fern J 75:132
12. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754-755
13. Kass RE, Raftery AE (1995) Bayes factors. J Am Stat Assoc 90:773-795
14. Kenrick P, Crane PR (1997) The origin and early evolution of plants on land. Nature 389:33-39
15. Korall P, Pryer KM, Metzgar JS, Schneider H, Conant DS (2006) Tree ferns : monophyletic groups and their relationships as revealed by four protein-coding plastid loci. Mol Phylogenet Evol 39:830-845
16. Krahulec F, Hrouda L, Kovarova M (1996). Production of gametophytes by Hippochaete (Equisetaceae) hybrids. Preslia 67:213-218
17. Lecointre G, Deleporte P (2005) Total evidence requires exclusion of phylogenetically misleading data. Zool Scr 34:101-117
18. Maddison WP (1997) Gene trees in species trees. Syst Biol 46:523-536
19. Nickrent DL, Parkinson CL, Palmer JD, Duff RJ (2000) Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Mol Biol Evol 17:1885-1895
20. Page CN (1972) An assessment of inter-specific relationships in Equisetum subgenus Equisetum. New Phytol 71:355-369
21. Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD (2001) Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature 409:618-621
22. Renzaglia KS, Duff RJ, Nickrent DL, Garbary DJ (2000) Vegetative and reproductive innovations of early land plants: implications for a unified phylogeny. Philos Trans R Soc B 355:769-793
23. Renzaglia KS, Dengate SB, Schmitt SJ, Duckett JG (2002) Novel features of Equisetum arvense spermatozoidsi insights into pteridophyte evolution. New Phytol 154:159-174
24. Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
25. Rosenthal A, Coutelle O, Craxton M (1993) Large-scale production of DNA sequencing templates by microtitre format PCR. Nucleic Acids Res 21:173-174
26. Schaffner JH ( 1925) Main lines of evolution in Equisetum. Am Fern J 15:8-12
27. Schaffner JH (1930) Geographical distribution of the species of Equisetum in relation to their phylogeny. Am Fern J 20:89-106
28. Simmons MP, Pickett KM, Miya M (2004) How meaningful are Bayesian support values ? Mol Biol Evol 21:188-199
29. Swofford DL (2002) PAUP*: phylogenetic analyses using parsimony (* and other methods), version 4.0b10. Sinauer Associates, Sunderland
30. Tsutsumi C, Kato M (2005) Molecular phylogenetic study on
31. Davalliaceae. Fern Gaz 17:147-162
32. Wikström KM, Pryer KM (2005) Incongruence between primary sequence data and the distribution of a mitochondrial atp I group II intron among ferns and horsetails. Mol Phylogenet Evol 36:484-493
33. Wolf PG (1997) Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes, Am J Bot 84:1429-1440