Surveillance of influenza a viruses in wild birds in slovenia from 2006 to 2010

Avian Diseases

Volumn 56, Issue 4 SUPPL.1, 2012, Pages 999-1005

  Slavec, Brigita ^a   Krapež, Uroš ^a   Račnik, Jožko ^a   Hari, Aleksandra ^b   Wernig, Jedrt M ^b   Dovč, Alenka ^a   Zadravec, Marko ^a   Lindtner Knific, Renata ^a   Marhold, Cvetka ^a   Zorman Rojs, Olga ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

^b Veterinary Administration of the Republic of Slovenia   (Slovenia)

Author keywords

HPAI; Influenza virus type A; LPAI; Slovenia; wild birds

Indexed keywords

ANIMAL; AVIAN INFLUENZA; BIRD; CONFERENCE PAPER; GENETICS; HEALTH SURVEY; INFLUENZA VIRUS A; ISOLATION AND PURIFICATION; PHYLOGENY; SLOVENIA; TIME; VIROLOGY; WILD ANIMAL;

ANIMALS; ANIMALS, WILD; BIRDS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; PHYLOGENY; POPULATION SURVEILLANCE; SLOVENIA; TIME FACTORS;

ANSERIFORMES; AVES; AVIAN INFLUENZA VIRUS; CHARADRIIFORMES; CICONIIFORMES; INFLUENZA A VIRUS; PELECANIFORMES;

EID: 84871941487     PISSN: 00052086     EISSN: None     Source Type: Journal    
DOI: 10.1637/10175-041012-ResNote.1     Document Type: Conference Paper

References (33)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. Basic local alignment search tool. J. Mol. Biol. 215:403-410. 1990.
2. BirdLife International. Birds in Europe: population estimates, trends and conservation status. BirdLife Conservation Series No. 12. BirdLife International, Cambridge, UK. 2004.
3. Bozic, L. A list of birds confirmed in Slovenia with an overview of rare species. Acrocephalus 22:115-120. 2001.
4. Capua, I., and D. J. Alexander. Avian influenza: recent developments. Avian. Pathol. 33:393-404. 2004. (Pubitemid 39290206)
5. Capua, I., and D. J. Alexander. Avian influenza infections in birds-a moving target. Influenza Other Respiratory Viruses 1:11-18. 2007.
6. Cattoli, G., A. Fusaro, I. Monne, and I. Capua. H5N1 Virus evolution in Europe-an updated overview. Viruses 1:1351-1363. 2009.
7. Cattoli, G., C. Terregino, V. Guberti, R. De Nardi, A. Drago, A. Salviato, S. Fassina, and I. Capua. Influenza virus surveillance in wild birds in Italy: results of laboratory investigations in 2003-2005. Avian Dis. 51(1 Suppl.):414-416. 2007. (Pubitemid 46671321)
8. Cattoli, G., I. Monne, A. Fusaro, T. M. Joannis, L. H. Lombin, M. M. Aly, A. S. Arafa, K. M. Sturm-Ramirez, E. Couacy-Hymann, J. A. Awuni, K. B. Batawui, K. A. Awoume, G. L. Aplogan, A. Sow, A. C. Ngangnou, I. M. El Nasri Hamza, D. Gamatié, G. Dauphin, J. M. Domenech, and I. Capua. Highly pathogenic avian influenza virus subtype H5N1 in Africa: a comprehensive phylogenetic analysis and molecular characterization of isolates. PLoS ONE 4:e4842. 2009.
9. Fink, M., S. R. Fernández, H. Schobesberger, and J. Koefer. Geographical spread of highly pathogenic avian influenza virus H5N1 during the 2006 outbreak in Austria. J. Virol. 84:5815-5823. 2010.
10. Fouchier, R. A., T. M. Bestebroer, S. Herfst, L. Van der Kemp, G. F. Rimmelzwaan, and A. D. Osterhaus. Detection of influenza A viruses in different species by PCR amplification of conserved sequences in the matrix gene. J. Clin. Microbiol. 38:4096-4101. 2000. (Pubitemid 32233210)
11. Fouchier, R. A., and V. J. Munster. Epidemiology of low pathogenic avian influenza viruses in wild birds. Rev. Sci. Tech. 28:49-58. 2009.
12. Fouchier, R. A., V. Munster, A. Wallensten, T. M. Bestebroer, S. Herfst, D. Smith, G. F. Rimmelzwaan, B. Olsen, and A. D. Osterhaus. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls. J. Virol. 79:2814-2822. 2005. (Pubitemid 40270559)
13. Globig, A., C. Staubach, M. Beer, U. Köppen, W. Fiedler, M. Nieburg, H. Wilking, E. Starick, J. P. Teifke, O. Werner, F. Unger, C. Grund, C. Wolf, H. Roost, F. Feldhusen, F. J. Conraths, T. C. Mettenleiter, and T. C. Harder. Epidemiological and ornithological aspects of outbreaks of highly pathogenic avian influenza virus H5N1 of Asian lineage in wild birds in Germany, 2006 and 2007. Transbound Emerg. Dis. 56:57-72. 2009.
14. Henriques, A. M., T. Fagulha, S. C. Barros, F. Ramos, M. Duarte, T. Luís, and M. Fevereiro. Multiyear surveillance of influenza A virus in wild birds in Portugal. Avian Pathol. 40:597-602. 2011.
15. Kaleta, E. F., G. Hergarten, and A. Yilmaz. Avian influenza A viruses in birds-an ecological, ornithological and virological view. Dtsch. Tierarztl. Wochenschr. 112:448-456. 2005. (Pubitemid 43051931)
16. Kilpatrick, A. M., A. A. Chmura, D. W. Gibbons, R. C. Fleischer, P. P. Marra, and P. Daszak. Predicting the global spread of H5N1 avian influenza. Proc. Natl. Acad. Sci. U. S. A. 103:19368-19373. 2006. (Pubitemid 46026037)
17. Munster, V. J., C. Baas, P. Lexmond, J. Waldenström, A. Wallensten, T. Fransson, G. F. Rimmelzwaan, W. E. Beyer, M. Schutten, B. Olsen, A. D. Osterhaus, and R. A. Fouchier. Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. PLoS Pathog. 3:0630-0638. 2007. (Pubitemid 46827948)
18. OIE (Office International des Epizooties). Chapter 2.3.4. Avian influenza. Manual of diagnostic tests and vaccines for terrestrial animals. (Internet). [cited 19 Jan. 2012]. Available from: http://www.oie.int/fileadmin/ Home/eng/Health-standards/tahm/2.03.04-AI.pdf. 2009.
19. Olsen, B., V. J. Munster, A. Wallensten, J. Waldenström, A. D. Osterhaus, and R. A. Fouchier. Global patterns of influenza a virus in wild birds. Science 312:384-388. 2006.
20. Payungporn, S., S. Chutinimitkul, A. Chaisingh, S. Damrongwantanapokin, C. Buranathai, A. Amonsin, A. Theamboonlers, and Y. Poovorawan. Single step multiplex real-time RT-PCR for H5N1 influenza A virus detection. J. Virol. Methods 131:143-147. 2006. (Pubitemid 43087644)
21. Phipps, L. P., S. C. Essen, and I. H. Brown. Genetic subtyping of influenza A viruses using RT-PCR with a single set of primers based on conserved sequences within the HA2 coding region. J. Virol. Methods 122:119-122. 2004. (Pubitemid 39370058)
22. Salzberg, S. L., C. Kingsford, G. Cattoli, D. J. Spiro, D. A. Janies, M. M. Aly, I. H. Brown, E. Couacy-Hymann, G. M. De Mia, H. Dung Do, A. Guercio, T. Joannis, A. S. Maken Ali, A. Osmani, I. Padalino, M. D. Saad, V. Savić, N. A. Sengamalay, S. Yingst, J. Zaborsky, O. Zorman-Rojs, E. Ghedin, and I. Capua. Genome analysis linking recent European and African influenza (H5N1) viruses. Emerg. Infect. Dis. 13:713-718. 2007. (Pubitemid 46705305)
23. Savić, V., A. Labrović, T. A. Zelenika, M. Balenović, S. Separović, and L. Jurinović. Multiple introduction of Asian H5N1 avian influenza virus in Croatia by wild birds during 2005-2006 and isolation of the virus from apparently healthy black-headed gulls (Larus ridibundus). Vector-Borne Zoonotic Dis. 10:915-920. 2010.
24. Slomka, M. J., T. Pavlidis, J. Banks, W. Shell, A. McNally, S. Essen, and I. H. Brown. Validated H5 Eurasian real-time reverse transcriptasepolymerase chain reaction and its application in H5N1 outbreaks in 2005-2006. Avian Dis. 51:373-377. 2007. (Pubitemid 46671312)
25. Spackman, E., D. A. Senne, T. J. Myers, L. L. Bulaga, L. P. Garber, M. L. Perdue, K. Lohman, L. T. Daum, and D. L. Suarez. Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J. Clin. Microbiol. 40:3256-3260. 2002. (Pubitemid 34977437)
26. Starick, E., A. Römer-Oberdörfer, and O. Werner. Type-and subtype-specific RT-PCR assays for avian influenza A viruses (AIV). J. Vet. Med. 47:295-301. 2000. (Pubitemid 30324777)
27. Sturm-Ramirez, K. M., D. J. Hulse-Post, E. A. Govorkova, J. Humberd, P. Seiler, P. Puthavathana, C. Buranathai, T. D. Nguyen, A. Chaisingh, H. T. Long, T. S. Naipospos, H. Chen, T. M. Ellis, Y. Guan, J. S. Peiris, and R. G. Webster. Are ducks contributing to the endemicity of highly pathogenic H5N1 influenza virus in Asia? J. Virol. 79:11269-11279. 2005. (Pubitemid 41170669)
28. Suarez, D. L. Influenza A Virus. In: Avian influenza. D. E. Swayne, ed. Blackwell Publishing, Ames, IA. pp. 3-22. 2008.
29. Swayne, D. E., and M. Pantin-Jackwood. Pathobiology of avian influenza virus infections in birds and mammals. In: Avian influenza. D. E. Swayne, ed. Blackwell Publishing, Ames, IA. pp. 87-122. 2008.
30. Szeleczky, Z., A. Dán, K. Ursu, E. Ivanics, I. Kiss, K. Erdélyi, S. Belák, C. P. Muller, I. H. Brown, and A. Bálint. Four different sublineages of highly pathogenic avian influenza H5N1 introduced in Hungary in 2006-2007. Vet. Microbiol. 139:24-33. 2009.
31. Tamura, K., J. Dudley, M. Nei, and S. Kumar. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599. 2007. (Pubitemid 47236692)
32. Webster, R. G., W. J. Bean, O. T. Gorman, T. M. Chambers, and Y. Kawaoka. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:152-179. 1992.
33. WHO/OIE/FAO H5N1 Evolution Working Group. Toward a unified nomenclature system for highly pathogenic avian influenza virus (H5N1). Emerg. Infect. Dis. 14(7):e1. 2008.