Dehydrin, alcohol dehydrogenase, and central metabolite levels are associated with cold tolerance in diploid strawberry (Fragaria spp.)

Planta

Volumn 237, Issue 1, 2013, Pages 265-277

  Davik, Jahn ^a   Koehler, Gage ^b   From, Britta ^c   Torp, Torfinn ^a   Rohloff, Jens ^d   Eidem, Petter ^d   Wilson, Robert C ^c   Sønsteby, Anita ^a   Randall, Stephen K ^b   Alsheikh, Muath ^e  

^a NORWEGIAN INSTITUTE OF BIOECONOMY RESEARCH   (Norway)

^b INDIANA UNIVERSITY   (United States)

^c INLAND NORWAY UNIVERSITY OF APPLIED SCIENCES   (Norway)

^d NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^e Graminor Breeding Ltd   (Norway)

Author keywords

Galactinol; Hierarchical clustering; Lethal temperature 50; Metabolite profiling; Raffinose pathway; Survival analysis

Indexed keywords

ALCOHOL DEHYDROGENASE; DEHYDRIN PROTEINS, PLANT; VEGETABLE PROTEIN;

ACCLIMATIZATION; ALTITUDE; ARTICLE; CLASSIFICATION; CLUSTER ANALYSIS; COLD; DIPLOIDY; FRAGARIA; FREEZING; GENETICS; GENOTYPE; MASS FRAGMENTOGRAPHY; METABOLISM; METABOLOMICS; METHODOLOGY; PLANT LEAF; PRINCIPAL COMPONENT ANALYSIS; SPECIES DIFFERENCE; STATISTICAL MODEL; WESTERN BLOTTING;

ACCLIMATIZATION; ALCOHOL DEHYDROGENASE; ALTITUDE; BLOTTING, WESTERN; CLUSTER ANALYSIS; COLD TEMPERATURE; DIPLOIDY; FRAGARIA; FREEZING; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; GENOTYPE; LINEAR MODELS; METABOLOMICS; PLANT LEAVES; PLANT PROTEINS; PRINCIPAL COMPONENT ANALYSIS; SPECIES SPECIFICITY;

BRACTEATA; FRAGARIA; FRAGARIA NILGERRENSIS; FRAGARIA NUBICOLA; FRAGARIA PENTAPHYLLA; FRAGARIA VESCA; FRAGARIA X ANANASSA;

EID: 84871923325     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-012-1771-2     Document Type: Article

References (52)

1. Artlip TS, Callahan AM, Bassett CL, Wisniewski ME (1997) Seasonal expression of a dehydrin gene in sibling deciduous and evergreen genotypes of peach (Prunus persica [L.] Batsch). Plant Mol Biol 33: 61-70.
2. Bassett CL, Wisniewski ME, Artlip TS, Richart G, Norelli JL, Farrell RE (2009) Comparative expression and transcript initiation of three peach dehydrin genes. Planta 230: 107-118.
3. Campbell SA, Close TJ (1997) Dehydrins: genes, proteins, and associations with phenotypic traits. New Phytol 137: 61-74.
4. Christie PJ, Hahn M, Walbot V (1991) Low-temperature accumulation of alcohol dehydrogenase-1 mRNA and protein activity in maize and rice seedlings. Plant Physiol 95: 699-706.
5. Close TJ (1996) Dehydrins: emergence of a biochemical role of a family of dehydration proteins. Physiol Plant 97: 795-803.
6. Close TJ (1997) Dehydrins: a commonality in the response of plants to dehydration and low temperature. Physiol Plant 100: 291-296.
7. Coles S (2001) An introduction to statistical modeling of extreme values. Springer, Berlin.
8. Cook D, Fowler S, Fiehn O, Thomashow MF (2004) A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc Natl Acad Sci USA 101: 15243-15248.
9. Danyluk J, Houde M, Rassart E, Sarhan F (1994) Differential expression of a gene encoding an acidic dehydrin in chilling sensitive and freezing tolerant Gramineae species. FEBS Lett 344: 20-24.
10. Davik J, Daugaard H, Svensson B (2000) Strawberry production in the Nordic countries. Adv Strawb Prod 19: 13-18.
11. Davis TM, Yu H (1997) A linkage map of the diploid strawberry, Fragaria vesca. J Hered 88: 215-221.
12. de Bruxelles GL, Peacock WJ, Dennis ES, Dolferus R (1996) Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis. Plant Physiol 111: 381-391.
13. Diab AA, Kantety RV, Ozturk NZ, Benscher D, Nachit MM, Sorrells ME (2008) Drought-inducible genes and differentially expressed sequence tags associated with components of drought tolerance in durum wheat. Sci Res Essays 3: 9-26.
14. Dolferus R, Jacobs M, Peacock WJ, Dennis ES (1994) Differential interactions of promoter elements in stress responses of the ArabidopsisAdh gene. Plant Physiol 105: 1075-1087.
15. Drew MC (1997) Oxygen deficiency and root metabolism: injury and acclimation under hypoxia and anoxia. Annu Rev Plant Physiol Plant Mol Biol 48: 223-250.
16. Folta KM, Davis TM (2006) Strawberry genes and genomics. Crit Rev Plant Sci 25: 399-415.
17. Garcia-Bañuelos ML, Gardea AA, Winzerling JJ, Vazquez-Moreno L (2009) Characterization of a midwinter-expressed dehydrin (DHN) gene from apple trees (Malus domestica). Plant Mol Biol Rep 27: 476-487.
18. Gusta LV, O'Connor BJ, MacHutcheon MG (1997) The selection of superior winter-hardy genotypes using a prolonged freeze test. Can J Plant Sci 77: 15-21.
19. Guy C, Kaplan F, Kopka J, Selbig J, Hincha DK (2008) Metabolomics of temperature stress. Physiol Plant 132: 220-235.
20. Hannah MA, Wiese D, Freund S, Fiehn O, Heyer AG, Hincha DK (2006) Natural genetic variation of freezing tolerance in Arabidopsis. Plant Physiol 142: 98-112.
21. Heide OM, Sønsteby A (2007) Interactions of temperature and photoperiod in the control of flowering of latitudinal and altitudinal populations of wild strawberry (Fragaria vesca). Physiol Plant 130: 280-289.
22. Houde M, Dallaire S, N'Dong D, Sarhan F (2004) Overexpression of the acidic dehydrin WCOR410 improves freezing tolerance in transgenic strawberry leaves. Plant Biotechnol J 2: 381-387.
23. Hummel J, Strehmel N, Selbig J, Walther D, Kopka J (2010) Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6: 322-333.
24. Jarillo JA, Leyva A, Salinas J, Martinez-Zapater JM (1993) Low temperature induces the accumulation of alcohol dehydrogenase mRNA in Arabidopsis thaliana, a chilling-tolerant plant. Plant Physiol 101: 833-837.
25. Kaplan RS, Pedersen PL (1985) Determination of microgram quantities of protein in the presence of milligram levels of lipid with amido black B-10. Anal Biochem 150: 97-104.
26. Kaplan F, Kopka J, Sung DY, Zhao W, Popp M, Porat R, Guy CL (2007) Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Plant J 50: 967-981.
27. Koehler G, Wilson RC, Goodpaster JV et al (2012) Proteomic study of low temperature responses in strawberry cultivars (Fragaria × ananassa Duschesne) that differ in cold tolerance. Plant Physiol 159: 1787-1805.
28. Korn M, Gärtner T, Erban A, Kopka J, Selbig J, Hincha DK (2010) Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition. Mol Plant 3: 224-235.
29. Kurz M (2008) Compatible solute influence on nucleic acids: many questions but few answers. Saline Syst 4: 6.
30. Lim CC, Krebs SL, Arora R (1999) A 25-kDa dehydrin associated with genotype- and age-dependent leaf freezing-tolerance in Rhododendron: a genetic marker for cold hardiness? Theor Appl Genet 99: 912-920.
31. Lindlöf A, Bräutigam M, Chawade A, Olsson B, Olsson O (2007) Identification of cold-induced genes in cereal crops and Arabidopsis through comparative analysis of multiple EST sets. In: Hochreiter S, Wagner R (eds) Bioinformatics research and development-first international conference BIRD '07, LNBI, vol 4414. Springer, Berlin, pp 48-65.
32. Marini RP, Boyce BR (1977) Susceptibility of crown tissues of 'Catskill' strawberry plants to low-temperature injury. J Am Soc Hortic Sci 102: 515-516.
33. Marini RP, Boyce BR (1979) Influence of low temperatures during dormancy on growth and development of 'Catskill' strawberry plants. J Am Soc Hortic Sci 104: 159-162.
34. Nestby R, Bjørgum R (1999) Freeze injury to strawberry plants as evaluated by crown tissue browning, regrowth and yield parameters. Sci Hortic 81: 321-329.
35. Nestby R, Bjørgum R, Nes A, Wikdahl T, Hageberg B (2000) Winter cover affecting freezing injury in strawberries in a coastal and continental climate. J Hortic Sci Biotech 75: 119-125.
36. Oosumi T, Gruszewski HA, Blischak LA, Baxter AJ, Wadl PA, Shuman JL, Veilleux RE, Shulev V (2006) High-efficiency transformation of the diploid strawberry (Fragaria vesca) for functional genomics. Planta 223: 1219-1230.
37. Potter D, Luby JJ, Harrison RE (2000) Phylogenetic relationships among species of Fragaria (Rosaceae) inferred from non-coding nuclear and chloroplast DNA sequences. Syst Bot 25: 337-348.
38. Roessner U, Luedemann A, Brust D, Fiehn O, Linke T, Willmitzer L, Fernie AR (2001) Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13: 11-29.
39. Rohloff J, Kopka J, Erban A et al (2009) Metabolic, transcriptional, and proteomic profiling of cold response in Fragaria vesca. Acta Hortic 842: 785-788.
40. Rohloff J, Kopka J, Erban A, Winge P, Wilson RC, Bones AM, Davik J, Randall SK, Alsheikh MK (2012) Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry). Phytochemistry 77: 99-109.
41. Rousseau-Gueutin M, Lerceteau-Köhler E, Barrot L, Sargent DJ, Monfort A, Simpson D, Arús P, Guérin G, Denoyes-Rothan B (2008) Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry. Genetics 179: 2045-2060.
42. Rousseau-Gueutin M, Gaston A, Aïnouche A, Ainouche ML, Olbricht K, Staudt G, Richard L, Denoyes-Rothan B (2009) Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes. Mol Phylgenet Evol 51: 515-530.
43. Saito M, Yoshida M (2011) Expression analysis of the gene family associated with raffinose accumulation in rice seedlings under cold stress. J Plant Physiol 168: 2268-2271.
44. Sargent DJ, Davis TM, Tobutt KR, Wilkinson MJ, Battey NH, Simpson DW (2004) A genetic linkage map of microsatellite, gene-specific and morphological markers in diploid Fragaria. Theor Appl Genet 109: 1385-1391.
45. Sargent DJ, Fernandéz-Fernandéz F, Ruiz-Roja JJ, Sutherland BG, Passey A, Whitehouse AB, Simpson DW (2009) A genetic linkage map of the cultivated strawberry (Fragaria × ananassa) and its comparison to the diploid Fragaria reference map. Mol Breed 24: 293-303.
46. ® 9. 2 User's guide. SAS Institute Inc., Cary.
47. Sasaki H, Ichimura K, Yamaki S (2001) Sucrose synthase and sucrose phosphate synthase, but not acid invertase, are regulated by cold acclimation and deacclimation in cabbage seedlings. J Plant Physiol 158: 847-852.
48. Schulze WX, Schneider T, Starck S, Martinola E, Trentmann O (2011) Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters. Plant J 69: 529-541.
49. Shulaev V, Sargent DJ, Crowhurst RN et al (2011) The genome of woodland strawberry (Fragaria vesca). Nat Genet 43: 109-116.
50. Sønsteby A, Heide OM (2011) Environmental regulation of dormancy and frost hardiness in Norwegian populations of wood strawberry (Fragaria vesca L.). In: Nestby R (ed) Plant science and biotechnology in Norway. Eur J Plant Sci Biotech 5(special issue 1): 42-48.
51. Teutonico RA, Palta JP, Osborn TC (1993) In vitro freezing tolerance in relation to winter survival of rapeseed cultivars. Crop Sci 33: 103-107.
52. Zuther E, Büchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG (2004) The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett 576: 169-173.