A genetic linkage map of the cultivated strawberry (fragaria × ananassa) and its comparison to the diploid fragaria reference map

Molecular Breeding

Volumn 24, Issue 3, 2009, Pages 293-303

  Sargent, D J ^a   Fernandez Fernandez F ^a   Ruiz Roja, J J ^b   Sutherland, B G ^a   Passey, A ^a   Whitehouse, A B ^a   Simpson, D W ^a  

^a EAST MALLING RESEARCH   (United Kingdom)

^b VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

Comparative genomics; Linkage mapping; Polyploidy; Rosaceae; Synteny

Indexed keywords

CULTIVATION; FRUITS; SCAFFOLDS;

COMPARATIVE GENOMICS; DIPLOID FRAGARIA; FRAGARIA ANANASSA; GENETIC LINKAGE MAPS; LINKAGE GROUPS; LINKAGE MAPPING; POLYPLOIDY; REFERENCE MAP; ROSACEA; SYNTENY;

GENES;

FRAGARIA; FRAGARIA X ANANASSA; ROSACEAE;

EID: 79251549886     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-009-9292-9     Document Type: Article

References (26)

1. Ahmadi H, Bringhurst RS, Voth V (1990) Modes of inheritance of photoperiodism in Fragaria. J Am Soc Hortic Sci 115:146-152
2. Arulsekar S, Bringhurst RS, Voth V (1981) Inheritance of PGI and LAP isozymes in octoploid cultivated strawberries. J Am Soc Hortic Sci 106:679-683
3. Ashley MV, Wilk JA, Styan SMN, Craft KJ, Jones KL, Feldheim KA, Lewers KS, Ashman TL (2003) High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill. (Rosaceae). Theor Appl Genet 107:1201-1207. doi:10.1007/s00122-003-1370-5
4. Darrow GM (1966) The strawberry: History, breeding and physiology. Holt, Rinehart and Winston, USA
5. Haymes KM, Henken B, Davis TM, van de Weg WE (1997) Identification of RAPD markers linked to a Phytophthora fragariae resistance gene (Rpf1) in the cultivated strawberry. Theor Appl Genet 94:1097-1101
6. Iwatsubo Y, Naruhashi N (1989) Karyotypes of three species of Fragaria (Rosaceae). Cytologia (Tokyo) 54:493-497
7. Lerceteau-Kohler E, Guerin G, Laigret F, Denoyes-Rothan B (2003) Characterization of mixed disomic and polysomic inheritance in the octoploid strawberry (Fragaria x ananassa) using AFLP mapping. Theor Appl Genet 107:619-628. doi:10.1007/s00122-003-1300-6
8. Lerceteau-Köhler E, Guerin G, Denoyes-Rothan B (2005) Identification of SCAR markers linked to Rca2 anthracnose resistance gene and their assessment in strawberry germplasm. Theor Appl Genet 111:862-870. doi:10.1007/s00122-005-0008-1
9. Nier S, Simpson DW, Tobutt KR, Sargent DJ (2006) Construction of a genetic linkage map of an interspecific diploid Fragaria BC1 mapping population (F. vesca 815 × [F. vesca 815 9× F. viridis 903]) and its comparison to the Fragaria reference map (FV × FB). J Hortic Sci Biotechnol 81:645-650
10. Rousseau-Gueutin M, Lerceteau-Köhler E, Barrot L, Sargent DJ, Monfort A, Simpson DW, Arús P, Guérin G, Denoyes-Rothan B (2008) Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry. Genetics 179:2045-2060. doi:10.1534/genetics.107.083840
11. Rousseau-Gueutin M, Gaston A, Aïnouche A, Aïnouche ML, Olbricht K, Staudt G, Richard L, Denoyes-Rothan B (2009) Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes. Mol Phylogenet Evol 51:515-530. doi:10.1016/j.ympev.2008.12.024
12. Sargent DJ, Hadonou AM, Simpson DW (2003) Development and characterization of polymorphic microsatellite markers from Fragaria viridis, a wild diploid strawberry. Mol Ecol Notes 3:550-552. doi:10.1046/j.1471-8286.2003.00507.x
13. Sargent DJ, Geibel M, Hawkins JA, Wilkinson MJ, Battey NH, Simpson DW (2004) Morphological traits in diploid Fragaria for the study of the genetic basis of phenotypic differences between species. Ann Bot (Lond) 94:787-796. doi:10.1093/aob/mch217
14. Sargent DJ, Clarke J, Simpson DW, Tobutt KR, Arús P, Monfort A, Vilanova S, Denoyes-Rothan B, Rousseau M, Folta KM, Bassil NV, Battey NH (2006) An enhanced microsatellite map of diploid Fragaria. Theor Appl Genet 112:1349-1359. doi:10.1007/s00122-006-0237-y
15. Sargent DJ, Rys A, Nier S, Simpson DW, Tobutt KR (2007) The development and mapping of functional markers in Fragaria and their transferability and potential for mapping in other genera. Theor Appl Genet 114:373-384. doi:10.1007/s00122-006-0441-9
16. Sargent DJ, Cipriani G, Vilanova S, Gil-Ariza D, Arús P, Simpson DW, Tobutt KR, Monfort A (2008) The development of a bin mapping population and the selective mapping of 103 markers in the diploid Fragaria reference map. Genome 51:120-127. doi:10.1139/G07-107
17. Seoighe C, Gehring C (2004) Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet 10:461-464. doi:10.1016/j.tig.2004.07.008
18. Seoighe C, Wolfe KH (1998) Extent of genomic rearrangement after genome duplication in yeast. Proc Natl Acad Sci USA 95:4447-4452. doi:10.1073/pnas.95.8.4447
19. Spigler RB, Lewers KS, Main DS, Ashman TL (2008) Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome. Heredity 101:507-517. doi:10.1038/hdy.2008.100
20. Staudt G (2006) Himalayan species of Fragaria (Rosaceae). Bot Jahrb Syst Pflanzengesch Pflanzengeogr 126:483-508. doi:10.1127/0006-8152/2006/0126-0483
21. Sugimoto T, Tamaki K, Matsumoto J, Yamamoto Y, Shiwaku K, Watanabe K (2005) Detection of RAPD markers linked to the everbearing gene in Japanese cultivated strawberry. Plant Breed 124:498-501. doi:10.1111/j.1439-0523.2005.01144.x
22. Sutherland BG, Tobutt KR, Marchese A, Paternoster G, Simpson DW, Sargent DJ (2008) A genetic linkage map of Physocarpus, a member of the Spiraeoideae (Rosaceae), based on RAPD, AFLP, RGA, SSR and gene specific markers. Plant Breed 127:527-532. doi:10.1111/j.1439-0523.2008.01505.x
23. Vandepoele K, Simillion C, Van de Peer Y (2002) Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice. Trends Genet 18:606-608. doi:10.1016/S0168-9525(02)02796-8
24. Vilanova S, Sargent DJ, Arús P, Monfort A (2008) Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry). BMC Plant Biol 8:67. doi:10.1186/1471-2229-8-67
25. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77-78. doi:10.1093/jhered/93.1.77
26. Wang XY, Shi XL, Hao BL, Ge S, Luo JC (2005) Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol 165:937-946. doi:10.1111/j.1469-8137.2004.01293.x