Proteomic analysis of rainbow trout (Oncorhynchus mykiss) intestinal epithelia: Physiological acclimation to short-term starvation

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 8, Issue 1, 2013, Pages 58-64

  Baumgarner, Bradley L ^a   Bharadwaj, Anant S ^a   Inerowicz, Dorota ^a   Goodman, Angela S ^a   Brown, Paul B ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

Intestine; Proteomics; Rainbow trout; Starvation

Indexed keywords

ALPHA 1 ANTITRYPSIN; KERATIN TYPE II; LEUKOCYTE ELASTASE INHIBITOR; MULTIDRUG RESISTANCE PROTEIN;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; ENERGY METABOLISM; FEMALE; INNATE IMMUNITY; INTESTINE; INTESTINE EPITHELIUM CELL; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; RAINBOW TROUT; STARVATION; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ONCORHYNCHUS MYKISS; TELEOSTEI; VERTEBRATA;

EID: 84871907389     PISSN: 1744117X     EISSN: 18780407     Source Type: Journal    
DOI: 10.1016/j.cbd.2012.11.001     Document Type: Article

References (52)

1. O.S. Bains, and C.J. Kennedy Alterations in respiration rate of isolated rainbow trout hepatocytes exposed to the P-glycoprotein substrate rhodamine 123 Toxicology 14 2005 87 98 (Pubitemid 41383977)
2. B.L. Baumgarner, C.P. Riley, M.S. Sepulveda, P.B. Brown, J.L. Meyer, and J. Adamec Increased expression of GAPDH protein is not indicative of nitrosative stress or apoptosis in liver of starved rainbow trout Oncorhynchus mykiss Fish Physiol. Biochem. 38 2012 319 327
3. V. Bazil Physiologic enzymatic cleavage of leukocyte membrane molecules Immunol. Today 16 1995 135 140
4. F. Bertile, and T. Raclot Proteomics can help to gain insights into metabolic disorders according to body reserve availability Curr. Med. Chem. 15 2008 2545 2558
5. J.J. Boza, D. Moënnoz, J. Vuichoud, A.R. Jarret, D. Gaudard-de-Weck, R. Fritsche', A. Donnet, E.J. Schiffrin, G. Perruisseau, and O. Balle' vre Food deprivation and refeeding influence growth, nutrient retention and functional recovery of rats J. Nutr. 129 1999 1340 1346 (Pubitemid 29304983)
6. A. Cerwenka, and L.L. Lanier Natural killer cells, viruses and cancer Nat. Rev. 1 2000 41 49
7. M. Conrad, K. Lemb, T. Schubert, and J. Markl Biochemical identification and tissue specific expression patterns of keratins in the zebrafish Danio rerio Cell Tissue Res. 293 1998 195 205 (Pubitemid 28382968)
8. P.A. Coulombe, and M.B. Omary 'Hard' and 'soft' principles defining the structure, function and regulation of keratin intermediate filaments Curr. Opin. Cell Biol. 14 2002 110 122 (Pubitemid 34131664)
9. J. Evenhuis, E. Bengtén, C. Snell, S.M. Quiniou, N.W. Miller, and M. Wilson Characterization of additional novel immune type receptors in channel catfish (Ictalurus punctatus) Immunogenetics 59 2007 661 671 (Pubitemid 47169324)
10. A.T. Fojo, K. Ueda, D.J. Slamon, D.G. Poplack, M.M. Gottesman, and I. Pastan Expression of a multidrug-resistance gene in human tumors and tissues Proc. Natl. Acad. Sci. U. S. A. 84 1987 265 269 (Pubitemid 17013615)
11. D.M. Garcia, H. Bauer, T. Dietz, T. Schubert, J. Markl, and M. Schaffeld Identification of keratins and analysis of their expression in carp and goldfish: comparison with the zebrafish and trout keratin catalog Cell Tissue Res. 30 2005 1 12
12. P. Gómez-Requeni, M. de Vareilles, K. Kousoulaki, A.-E.O. Jordal, L.E.C. Conceição, and I. Rønnestad Whole body proteome response to a dietary lysine imbalance in zebrafish Danio rerio Comp. Biochem. Physiol. D 6 2011 178 186
13. A. Görg, W. Weiss, and M.J. Dunn Review: current two-dimensional electrophoresis technology for proteomics Proteomics 4 2004 3665 3685 (Pubitemid 39657447)
14. M.E. Gourley, and C.J. Kennedy Energy allocations to xenobiotic transport and biotransformation reactions in rainbow trout (Oncorhynchus mykiss) during energy intake restriction Comp. Biochem. Physiol. C 150 2009 270 278
15. S.P. Gygi, G.L. Corthals, Y. Zhang, Y. Rochon, and R. Aebersold Evaluation of two-dimensional proteome analysis technology Proc. Natl. Acad. Sci. U. S. A. 97 2000 9390 9395 (Pubitemid 30650785)
16. Y. Hakim, S. Harpaz, and Z. Uni Expression of brush border enzymes and transporters in the intestine of European sea bass (Dicentrarchus labrax) following food deprivation Aquaculture 290 2009 110 115
17. M.R. Hara, N. Agrawal, S.F. Kim, M.B. Cascio, M. Fujimuro, Y. Ozeki, M. Takahashi, J.H. Cheah, S.K. Tankou, L.D. Hester, C.D. Ferris, S.D. Hayward, S.H. Snyder, and A. Sawa S-nitrosylated GAPDH initiates apoptotic cell death by nuclear translocation following Siah1 binding Nat. Cell Biol. 7 2005 665 674 (Pubitemid 40975747)
18. A. Krogdahl, and A.M. Bakke-McKellep Fasting and refeeding cause rapid changes in intestinal tissue mass and digestive enzyme capacities of Atlantic salmon (Salmo salar L.) Comp. Biochem. Physiol. A 141 2005 450 460 (Pubitemid 41225437)
19. A. Krogdahl, S. Nordrum, M. Sorensen, L. Brudeseth, and C. Rosjo Effects of diet composition on apparent nutrient absorption along the intestinal tract and of subsequent fasting on mucosal disaccharidase activities and plasma nutrient concentration in Atlantic salmon Salmo salar L. Aquacult. Nutr. 5 1999 121 133 (Pubitemid 129642908)
20. M. Kussman, F. Raymond, and M. Affolter OMICS-driven biomarker discovery in nutrition and health J. Biotechnol. 124 2006 758 787 (Pubitemid 44088435)
21. K. Lenaerts, M. Sokolovic, F.G. Bouwman, W.H. Lamers, E.C. Mariman, and J. Renes Starvation induces phase-specific changes in the proteome of mouse small intestine J. Proteome Res. 5 2006 2113 2122 (Pubitemid 44330803)
22. K. Lenaerts, F.G. Bouwman, W.H. Lamers, J. Renes, and E.C. Mariman Comparative proteomic analysis of cell lines and scrapings of the human intestinal epithelium BMC Genomics 8 2007 91
23. G.W. Litman, J.A. Yoder, J.P. Cannon, and R.N. Haire Novel immune-type receptor genes and the origins of adaptive and innate immune recognition Integr. Comp. Biol. 43 2003 331 337 (Pubitemid 36953160)
24. S.A.M. Martin, P. Cash, S. Blaney, and D.F. Houlihan Proteome analysis of rainbow trout (Oncorhynchus mykiss) liver proteome during short term starvation Fish Physiol. Biochem. 24 2001 259 270 (Pubitemid 34182970)
25. B.A. McCracken, M.E. Spurlock, M.A. Roos, F.A. Zuckermann, and H.R. Gaskins Weaning anorexia may contribute to local inflammation in the piglet small intestine1 J. Nutr. 129 1999 613 619 (Pubitemid 29118041)
26. C. Mizon, C. Becuwe, M. Balduyck, J.-F. Colombel, J. Mizon, and P. Degand Qualitative study of fecal α1-proteinase inhibitor in normal subjects and patients with Crohn's disease Clin. Chem. 34 1988 2268 2270 (Pubitemid 19001251)
27. P. Morata, A.M. Vargas, F. Sanchez-Medina, M. Garcia, G. Cardennete, and S. Zamora Evolution of gluconeogenic enzyme activities during starvation in liver and kidney of the rainbow trout (Salmo gairdneri) Comp. Biochem. Physiol. 71 1982 65 70
28. National Research Council Nutrient Requirements of Fish 1993 National Academy Press Washington, DC
29. S.T. Onga, J.Z.S. Hob, B. Hoc, and J.L. Dinga Iron-withholding strategy in innate immunity Immunobiology 211 2006 295 314
30. A.E. Ostergaard, S.A. Martin, T. Wang, R.J. Stet, and C.J. Secombes Rainbow trout (Oncorhynchus mykiss) possess multiple novel immunoglobulin-like transcripts containing either an ITAM or ITIMs Dev. Comp. Immunol. 33 2009 525 532
31. L. Padron-Barthe, C. Leprêtre, E. Martin, E.-F. Counis, and A. Torriglia Conformational modification of serpins transforms leukocyte elastase inhibitor into an endonuclease involved in apoptosis Mol. Cell. Biol. 27 2007 4028 4036 (Pubitemid 47011000)
32. R.S. Pitman, and R.S. Blumberg First line of defense: the role of the intestinal epithelium as an active component of the mucosal immune system J. Gastroenterol. 35 2000 805 814
33. J.V. Ravetch, and L.L. Lanier Immune inhibitory receptors Science 290 2000 84 89
34. C.M.S. Ribeiro, S. Bird, G. Raes, G.H. Ghassabeh, V.E.J.C. Schijns, Pontes1, H.F.J. Savelkoul, and G.F. Wiegertjes A novel soluble immune-type receptor (sitr) in teleost fish: carp sitr is involved in the nitric oxide-mediated response to a protozoan parasite PLoS One 6 2011 e15986 10.1371/journal.pone.0015986
35. A.A. Ruefli, and R. Johnstone A role for P-glycoprotein in regulating cell growth and survival Clin. Appl. Immunol. Rev. 4 2003 31 47 (Pubitemid 36814101)
36. M. Salem, J. Silverstein, C.E. Rexroad, and J. Yao Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss) BMC Genomics 8 2007 323 333
37. A. Sawa, A.A. Khan, L.D. Hester, and S.H. Snyder Glyceraldehyde-3- phosphate dehydrogenase: nuclear translocation participates in neuronal and non-neuronal cell death Proc. Natl. Acad. Sci. U. S. A. 21 1997 11669 11674 (Pubitemid 27451056)
38. M. Schaffeld, M. Haberkamp, E. Braziulis, B. Lieb, and J. Markl Type II keratin cDNAs from the rainbow trout: implications for keratin evolution Differentiation 70 2002 292 299 (Pubitemid 38232702)
39. I. Seileiz, S. Panserat, S. Skiba-Cassy, A. Fricot, C. Vachot, S. Kaushik, and S. Tesseraud Feeding status regulates the polyubiquitination step of the ubiquitin-proteosome-dependent proteolysis in rainbow trout (Oncorhynchus mykiss) muscle J. Nutr. 138 2008 487 491 (Pubitemid 351355245)
40. M. Si-Tahar, D. Merlin, S. Sitaraman, and J.L. Madara Constitutive and regulated secretion of secretory leukocyte proteinase inhibitor by human intestinal epithelial cells Gastroenterol. 118 2000 1061 1071 (Pubitemid 30346983)
41. G.A. Silverman, P.I. Bird, R.W. Carrell, F.C. Church, P.B. Coughlin, P.G. Gettins, J.A. Irving, D.A. Lomas, C.J. Luke, R.W. Moyer, P.A. Pemberton, E. Remold-O'Donnell, G.S. Salvesen, J. Travis, and J.C. Whisstock The serpins are an expanding superfamily of structurally similar but functionally diverse proteins. Evolution, mechanism of inhibition, novel functions, and a revised nomenclature J. Biol. Chem. 276 2001 33293 33296
42. M.A. Sirover New functions for the glycolytic protein, glyceraldehyde-3-phosphate dehydrogenase, in mammalian cells J. Cell. Biochem. 95 2005 45 52 (Pubitemid 41420214)
43. J.L. Stafford, and M. Belosevic Transferrin and the innate immune response of fish: identification of a novel mechanism of macrophage activation Dev. Comp. Immunol. 27 2003 539 554 (Pubitemid 36411913)
44. A. Sturm, C. Ziemann, K.I. Hirsch-Ernst, and H. Segner Expression and functional activity of P-glycoprotein in cultured hepatocytes from (Oncorhynchus mykiss) Am. J. Physiol. Regul. Integr. Comp. Physiol. 281 2001 R1119 R1126
45. F. Thiebaut, T. Tsuruo, H. Hamada, M.M. Gottesman, and I. Pastan Cellular localization of the multidrug-resistance gene product in normal human tissues Proc. Natl. Acad. Sci. U. S. A. 84 1987 7735 7738
46. D.M. Toivola, S. Krishnan, H.J. Binder, S.K. Singh, and M.B. Omary Keratins modulate colonocyte electrolyte transport via protein mistargeting J. Cell Biol. 164 2004 911 921 (Pubitemid 38366902)
47. A. Valle, E. Silvestri, M. Moreno, A. Chambery, J. Oliver, P. Roca, and F. Goglia Combined effect of gender and caloric restriction on liver proteomics expression profile J. Proteome Res. 7 2008 2872 2881
48. D. van Gent, P. Sharp, K. Morgan, and N. Kalsheker Serpins: structure, function and molecular evolution Int. J. Biochem. Cell Biol. 35 2003 1536 1547 (Pubitemid 36724947)
49. T. Wang, C.C.Y. Hung, and D.J. Randall The comparative physiology of food deprivation: from feast to famine Annu. Rev. Physiol. 68 2006 223 251
50. L. Wang, S. Srinivasan, A.L. Theiss, D. Merlin, and S.V. Sitaraman Interleukin-6 induces keratin expression in intestinal epithelial cells: potential role of keratin-8 in interleukin-6-induced barrier function alterations J. Biol. Chem. 282 2007 8219 8227 (Pubitemid 47093611)
51. T.E. Weber, and B.G. Bosworth Effects of 28 day exposure to cold temperature or feed restriction on growth, body composition, and expression of genes related to muscle growth and metabolism in channel catfish Aquaculture 246 2005 483 492 (Pubitemid 40588976)
52. J.A. Yoder, M.G. Mueller, K.M. Nichols, S.S. Ristow, G.H. Thorgaard, T. Ota, and G.W. Litman Cloning novel immune-type inhibitory receptors from the rainbow trout (Oncorhynchus mykiss) Immunogenetics 54 2002 662 670 (Pubitemid 35447480)