-
1
-
-
61949363966
-
Adaptive mechanisms regulate preferred utilization of ketones in the heart and brain of a hibernating mammal during arousal from torpor
-
Andrews MT, Russeth KP, Drewes LR, Henry PG. Adaptive mechanisms regulate preferred utilization of ketones in the heart and brain of a hibernating mammal during arousal from torpor. Am J Physiol Regul Integr Comp Physiol 296: R383-R393, 2009.
-
(2009)
Am J Physiol Regul Integr Comp Physiol
, vol.296
-
-
Andrews, M.T.1
Russeth, K.P.2
Drewes, L.R.3
Henry, P.G.4
-
2
-
-
0022409244
-
Fuel utilization in colonocytes of the rat
-
Ardawi MS, Newsholme EA. Fuel utilization in colonocytes of the rat. Biochem J 231: 713-719, 1985.
-
(1985)
Biochem J
, vol.231
, pp. 713-719
-
-
Ardawi, M.S.1
Newsholme, E.A.2
-
3
-
-
8144226856
-
The gut microbiota as an environmental factor that regulates fat storage
-
Backhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A, Semenkovich CF, Gordon JI. The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci USA 101: 15718-15723, 2004.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15718-15723
-
-
Backhed, F.1
Ding, H.2
Wang, T.3
Hooper, L.V.4
Koh, G.Y.5
Nagy, A.6
Semenkovich, C.F.7
Gordon, J.I.8
-
4
-
-
15544369658
-
Hostbacterial mutualism in the human intestine
-
Backhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. Hostbacterial mutualism in the human intestine. Science 307: 1915-1920, 2005.
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
5
-
-
0014883474
-
Effect of hibernation on the intestinal flora
-
Barnes EM. Effect of hibernation on the intestinal flora. Am J Clin Nutr 23: 1519-1524, 1970.
-
(1970)
Am J Clin Nutr
, vol.23
, pp. 1519-1524
-
-
Barnes, E.M.1
-
6
-
-
0014838329
-
The effect of hibernation on the caecal flora of the thirteen-lined ground squirrel (Citellus tridecemlineatus)
-
Barnes EM, Burton GC. The effect of hibernation on the caecal flora of the thirteen-lined ground squirrel (Citellus tridecemlineatus). J Appl Bacteriol 33: 505-514, 1970.
-
(1970)
J Appl Bacteriol
, vol.33
, pp. 505-514
-
-
Barnes, E.M.1
Burton, G.C.2
-
7
-
-
0025321505
-
Energy contributions of volatile fatty acids from the gastrointestinal tract in various species
-
Bergman EN. Energy contributions of volatile fatty acids from the gastrointestinal tract in various species. Physiol Rev 70: 567-590, 1990.
-
(1990)
Physiol Rev
, vol.70
, pp. 567-590
-
-
Bergman, E.N.1
-
8
-
-
0027169154
-
Biological effects of short-chain fatty acids in nonruminant mammals
-
Bugaut M, Bentejac M. Biological effects of short-chain fatty acids in nonruminant mammals. Annu Rev Nutr 13: 217-241, 1993.
-
(1993)
Annu Rev Nutr
, vol.13
, pp. 217-241
-
-
Bugaut, M.1
Bentejac, M.2
-
9
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26: 266-267, 2010.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
Desantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
10
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336, 2010.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
11
-
-
0027093428
-
Effects of fasting and hibernation on ion secretion in ground squirrel intestine
-
Carey HV. Effects of fasting and hibernation on ion secretion in ground squirrel intestine. Am J Physiol Regul Integr Comp Physiol 263: R1202-R1208, 1992.
-
(1992)
Am J Physiol Regul Integr Comp Physiol
, vol.263
-
-
Carey, H.V.1
-
12
-
-
0024999187
-
Seasonal changes in mucosal structure and function in ground squirrel intestine
-
Carey HV. Seasonal changes in mucosal structure and function in ground squirrel intestine. Am J Physiol Regul Integr Comp Physiol 259: R385-R392, 1990.
-
(1990)
Am J Physiol Regul Integr Comp Physiol
, vol.259
-
-
Carey, H.V.1
-
13
-
-
0141528621
-
Mammalian hibernation: Cellular and molecular responses to depressed metabolism and low temperature
-
Carey HV, Andrews MT, Martin SL. Mammalian hibernation: cellular and molecular responses to depressed metabolism and low temperature. Physiol Rev 83: 1153-1181, 2003.
-
(2003)
Physiol Rev
, vol.83
, pp. 1153-1181
-
-
Carey, H.V.1
Andrews, M.T.2
Martin, S.L.3
-
15
-
-
84908100787
-
Impact of hibernation on gut microbiota and intestinal barrier function in ground squirrels
-
edited by Ruf T, Bieber C, Arnold A, and Millesi E. Heidelberg, Germany: Springer
-
Carey HV, Pike AC, Weber CR, Turner JL, Visser A, Beijer-Liefers SC, Bouma HR, Kroese FGM. Impact of hibernation on gut microbiota and intestinal barrier function in ground squirrels. In: Living in a Seasonal World: Thermoregulatory and Metabolic Adaptations, edited by Ruf T, Bieber C, Arnold A, and Millesi E. Heidelberg, Germany: Springer, 2012.
-
(2012)
Living In a Seasonal World: Thermoregulatory and Metabolic Adaptations
-
-
Carey, H.V.1
Pike, A.C.2
Weber, C.R.3
Turner, J.L.4
Visser, A.5
Beijer-Liefers, S.C.6
Bouma, H.R.7
Kroese, F.G.M.8
-
16
-
-
34447515504
-
Thirteen-lined ground squirrels (Spermophilus tridecemlineatus) harbor multiantibiotic resistant bacteria
-
Cloud-Hansen KA, Villiard KM, Handelsman J, Carey HV. Thirteen-lined ground squirrels (Spermophilus tridecemlineatus) harbor multiantibiotic resistant bacteria. J Am Assoc Lab Animal Sci 46: 17-20, 2007.
-
(2007)
J Am Assoc Lab Animal Sci
, vol.46
, pp. 17-20
-
-
Cloud-Hansen, K.A.1
Villiard, K.M.2
Handelsman, J.3
Carey, H.V.4
-
17
-
-
77958490531
-
Postprandial remodeling of the gut microbiota in Burmese pythons
-
Costello EK, Gordon JI, Secor SM, Knight R. Postprandial remodeling of the gut microbiota in Burmese pythons. ISME J 4: 1375-1385, 2010.
-
(2010)
ISME J
, vol.4
, pp. 1375-1385
-
-
Costello, E.K.1
Gordon, J.I.2
Secor, S.M.3
Knight, R.4
-
18
-
-
67650473912
-
Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation
-
Crawford PA, Crowley JR, Sambandam N, Muegge BD, Costello EK, Hamady M, Knight R, Gordon JI. Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation. Proc Natl Acad Sci USA 106: 11276-11281, 2009.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11276-11281
-
-
Crawford, P.A.1
Crowley, J.R.2
Sambandam, N.3
Muegge, B.D.4
Costello, E.K.5
Hamady, M.6
Knight, R.7
Gordon, J.I.8
-
19
-
-
83655210633
-
Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila
-
Derrien M, Van Baarlen P, Hooiveld G, Norin E, Muller M, de Vos WM. Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila. Front Microbiol 2: 166, 2011.
-
(2011)
Front Microbiol
, vol.2
, pp. 166
-
-
Derrien, M.1
van Baarlen, P.2
Hooiveld, G.3
Norin, E.4
Muller, M.5
de Vos, W.M.6
-
20
-
-
77956652411
-
Mucin-bacterial interactions in the human oral cavity and digestive tract
-
Derrien M, van Passel MW, van de Bovenkamp JH, Schipper RG, de Vos WM, Dekker J. Mucin-bacterial interactions in the human oral cavity and digestive tract. Gut Microbes 1: 254-268, 2010.
-
(2010)
Gut Microbes
, vol.1
, pp. 254-268
-
-
Derrien, M.1
van Passel, M.W.2
van de, B.J.H.3
Schipper, R.G.4
de Vos, W.M.5
Dekker, J.6
-
21
-
-
5444248493
-
Akkermansia muciniphila gen. nov, sp nov, a human intestinal mucin-degrading bacterium
-
Derrien M, Vaughan EE, Plugge CM, de Vos WM. Akkermansia muciniphila gen. nov, sp nov, a human intestinal mucin-degrading bacterium. Int J Syst Evol Microbiol 54: 1469-1476, 2004.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1469-1476
-
-
Derrien, M.1
Vaughan, E.E.2
Plugge, C.M.3
de Vos, W.M.4
-
22
-
-
33847233644
-
Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
-
Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, Lobley GE. Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl Environ Microbiol 73: 1073-1078, 2007.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1073-1078
-
-
Duncan, S.H.1
Belenguer, A.2
Holtrop, G.3
Johnstone, A.M.4
Flint, H.J.5
Lobley, G.E.6
-
23
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461, 2010.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
24
-
-
34047251829
-
Phylogenetic diversity (PD) and biodiversity conservation: Some bioinformatics challenges
-
Faith DP, Baker AM. Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Evol Bioinform Online 2: 121-128, 2006.
-
(2006)
Evol Bioinform Online
, vol.2
, pp. 121-128
-
-
Faith, D.P.1
Baker, A.M.2
-
25
-
-
23044475552
-
Modulation of apoptotic pathways in intestinal mucosa during hibernation
-
Fleck CC, Carey HV. Modulation of apoptotic pathways in intestinal mucosa during hibernation. Am J Physiol Regul Integr Comp Physiol 289: R586-R595, 2005.
-
(2005)
Am J Physiol Regul Integr Comp Physiol
, vol.289
-
-
Fleck, C.C.1
Carey, H.V.2
-
26
-
-
84863871551
-
Microbial degradation of complex carbohydrates in the gut
-
Flint HJ, Scott KP, Duncan SH, Louis P, Forano E. Microbial degradation of complex carbohydrates in the gut. Gut Microbes 3: 1-18, 2012.
-
(2012)
Gut Microbes
, vol.3
, pp. 1-18
-
-
Flint, H.J.1
Scott, K.P.2
Duncan, S.H.3
Louis, P.4
Forano, E.5
-
27
-
-
84859860277
-
The regulation of food intake in mammalian hibernators: A review
-
Florant GL, Healy JE. The regulation of food intake in mammalian hibernators: a review. J Comp Physiol B 182: 451-467, 2012.
-
(2012)
J Comp Physiol B
, vol.182
, pp. 451-467
-
-
Florant, G.L.1
Healy, J.E.2
-
28
-
-
0016667250
-
Gluconeogenesis in arctic ground squirrels between periods of hibernation
-
Galster W, Morrison PR. Gluconeogenesis in arctic ground squirrels between periods of hibernation. Am J Physiol 228: 325-330, 1975.
-
(1975)
Am J Physiol
, vol.228
, pp. 325-330
-
-
Galster, W.1
Morrison, P.R.2
-
29
-
-
9244245819
-
Butyrate specifically modulates MUC gene expression in intestinal epithelial goblet cells deprived of glucose
-
Gaudier E, Jarry A, Blottiere HM, de Coppet P, Buisine MP, Aubert JP, Laboisse C, Cherbut C, Hoebler C. Butyrate specifically modulates MUC gene expression in intestinal epithelial goblet cells deprived of glucose. Am J Physiol Gastrointest Liver Physiol 287: G1168-G1174, 2004.
-
(2004)
Am J Physiol Gastrointest Liver Physiol
, vol.287
-
-
Gaudier, E.1
Jarry, A.2
Blottiere, H.M.3
de Coppet, P.4
Buisine, M.P.5
Aubert, J.P.6
Laboisse, C.7
Cherbut, C.8
Hoebler, C.9
-
30
-
-
84861980130
-
Interactions between the microbiota and the immune system
-
Hooper LV, Littman DR, Macpherson AJ. Interactions between the microbiota and the immune system. Science 336: 1268-1273, 2012.
-
(2012)
Science
, vol.336
, pp. 1268-1273
-
-
Hooper, L.V.1
Littman, D.R.2
Macpherson, A.J.3
-
31
-
-
0036399823
-
How host-microbial interactions shape the nutrient environment of the mammalian intestine
-
Hooper LV, Midtvedt T, Gordon JI. How host-microbial interactions shape the nutrient environment of the mammalian intestine. Ann Rev Nutr 22: 283-307, 2002.
-
(2002)
Ann Rev Nutr
, vol.22
, pp. 283-307
-
-
Hooper, L.V.1
Midtvedt, T.2
Gordon, J.I.3
-
32
-
-
0035793372
-
Molecular analysis of commensal host-microbial relationships in the intestine
-
Hooper LV, Wong MH, Thelin A, Hansson L, Falk PG, Gordon JI. Molecular analysis of commensal host-microbial relationships in the intestine. Science 291: 881-884, 2001.
-
(2001)
Science
, vol.291
, pp. 881-884
-
-
Hooper, L.V.1
Wong, M.H.2
Thelin, A.3
Hansson, L.4
Falk, P.G.5
Gordon, J.I.6
-
33
-
-
0021917190
-
Mucin degradation in human colon ecosystems. Isolation and properties of fecal strains that degrade ABH blood group antigens and oligosaccharides from mucin glycoproteins
-
Hoskins LC, Agustines M, McKee WB, Boulding ET, Kriaris M, Niedermeyer G. Mucin degradation in human colon ecosystems. Isolation and properties of fecal strains that degrade ABH blood group antigens and oligosaccharides from mucin glycoproteins. J Clin Invest 75: 944-953, 1985.
-
(1985)
J Clin Invest
, vol.75
, pp. 944-953
-
-
Hoskins, L.C.1
Agustines, M.2
McKee, W.B.3
Boulding, E.T.4
Kriaris, M.5
Niedermeyer, G.6
-
35
-
-
33845572705
-
Seasonal changes in the intestinal immune system of hibernating ground squirrels
-
Kurtz CC, Carey HV. Seasonal changes in the intestinal immune system of hibernating ground squirrels. Dev Comp Immunol 31: 415-428, 2007.
-
(2007)
Dev Comp Immunol
, vol.31
, pp. 415-428
-
-
Kurtz, C.C.1
Carey, H.V.2
-
36
-
-
78650647326
-
Has the microbiota played a critical role in the evolution of the adaptive immune system?
-
Lee YK, Mazmanian SK. Has the microbiota played a critical role in the evolution of the adaptive immune system? Science 330: 1768-1773, 2010.
-
(2010)
Science
, vol.330
, pp. 1768-1773
-
-
Lee, Y.K.1
Mazmanian, S.K.2
-
37
-
-
0033868844
-
Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae
-
Leser TD, Lindecrona RH, Jensen TK, Jensen BB, Moller K. Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae. Appl Environ Microbiol 66: 3290-3296, 2000.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3290-3296
-
-
Leser, T.D.1
Lindecrona, R.H.2
Jensen, T.K.3
Jensen, B.B.4
Moller, K.5
-
38
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. Evolution of mammals and their gut microbes. Science 320: 1647-1651, 2008.
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
Schlegel, M.L.7
Tucker, T.A.8
Schrenzel, M.D.9
Knight, R.10
Gordon, J.I.11
-
39
-
-
52049092682
-
Worlds within worlds: Evolution of the vertebrate gut microbiota
-
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol 6: 776-788, 2008.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
40
-
-
63849241608
-
Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine
-
Louis P, Flint HJ. Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine. FEMS Microbiol Lett 294: 1-8, 2009.
-
(2009)
FEMS Microbiol Lett
, vol.294
, pp. 1-8
-
-
Louis, P.1
Flint, H.J.2
-
41
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235, 2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
42
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota. Nature 489: 220-230, 2012.
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
Knight, R.5
-
44
-
-
77950585581
-
Caveolin-1-dependent occludin endocytosis is required for TNF-induced tight junction regulation in vivo
-
Marchiando AM, Shen L, Graham WV, Weber CR, Schwarz BT, Austin 2nd JR, Raleigh DR, Guan Y, Watson AJ, Montrose MH, Turner JR. Caveolin-1-dependent occludin endocytosis is required for TNF-induced tight junction regulation in vivo. J Cell Biol 189: 111-126, 2010.
-
(2010)
J Cell Biol
, vol.189
, pp. 111-126
-
-
Marchiando, A.M.1
Shen, L.2
Graham, W.V.3
Weber, C.R.4
Schwarz, B.T.5
Austin, J.R.6
Raleigh, D.R.7
Guan, Y.8
Watson, A.J.9
Montrose, M.H.10
Turner, J.R.11
-
45
-
-
55249108031
-
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
-
Martens EC, Chiang HC, Gordon JI. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe 4: 447-457, 2008.
-
(2008)
Cell Host Microbe
, vol.4
, pp. 447-457
-
-
Martens, E.C.1
Chiang, H.C.2
Gordon, J.I.3
-
46
-
-
84866167497
-
Reciprocal interactions of the intestinal microbiota and immune system
-
Maynard CL, Elson CO, Hatton RD, Weaver CT. Reciprocal interactions of the intestinal microbiota and immune system. Nature 489: 231-241, 2012.
-
(2012)
Nature
, vol.489
, pp. 231-241
-
-
Maynard, C.L.1
Elson, C.O.2
Hatton, R.D.3
Weaver, C.T.4
-
47
-
-
79952756170
-
Mucin dynamics and enteric pathogens
-
McGuckin MA, Linden SK, Sutton P, Florin TH. Mucin dynamics and enteric pathogens. Nat Rev Microbiol 9: 265-278, 2011.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 265-278
-
-
McGuckin, M.A.1
Linden, S.K.2
Sutton, P.3
Florin, T.H.4
-
48
-
-
0016516090
-
Psychrophilic bacteria
-
Morita RY. Psychrophilic bacteria. Bacteriol Rev 39: 144-167, 1975.
-
(1975)
Bacteriol Rev
, vol.39
, pp. 144-167
-
-
Morita, R.Y.1
-
49
-
-
79956301905
-
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
-
Muegge BD, Kuczynski J, Knights D, Clemente JC, Gonzalez A, Fontana L, Henrissat B, Knight R, Gordon JI. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332: 970-974, 2011.
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.D.1
Kuczynski, J.2
Knights, D.3
Clemente, J.C.4
Gonzalez, A.5
Fontana, L.6
Henrissat, B.7
Knight, R.8
Gordon, J.I.9
-
50
-
-
84861978076
-
Host-gut microbiota metabolic interactions
-
Nicholson JK, Holmes E, Kinross J, Burcelin R, Gibson G, Jia W, Pettersson S. Host-gut microbiota metabolic interactions. Science 336: 1262-1267, 2012.
-
(2012)
Science
, vol.336
, pp. 1262-1267
-
-
Nicholson, J.K.1
Holmes, E.2
Kinross, J.3
Burcelin, R.4
Gibson, G.5
Jia, W.6
Pettersson, S.7
-
51
-
-
33846974390
-
Effects of butyrate on intestinal barrier function in a Caco-2 cell monolayer model of intestinal barrier
-
Peng L, He Z, Chen W, Holzman IR, Lin J. Effects of butyrate on intestinal barrier function in a Caco-2 cell monolayer model of intestinal barrier. Pediatr Res 61: 37-41, 2007.
-
(2007)
Pediatr Res
, vol.61
, pp. 37-41
-
-
Peng, L.1
He, Z.2
Chen, W.3
Holzman, I.R.4
Lin, J.5
-
52
-
-
0001095155
-
Rhythmical arousal from hibernation in the golden-mantled ground squirrel, Citellus lateralis tescorum
-
Pengelley ET, Fisher KC. Rhythmical arousal from hibernation in the golden-mantled ground squirrel, Citellus lateralis tescorum. Can J Zool 39: 105-120, 1961.
-
(1961)
Can J Zool
, vol.39
, pp. 105-120
-
-
Pengelley, E.T.1
Fisher, K.C.2
-
53
-
-
35848931007
-
IgA response to symbiotic bacteria as a mediator of gut homeostasis
-
Peterson DA, McNulty NP, Guruge JL, Gordon JI. IgA response to symbiotic bacteria as a mediator of gut homeostasis. Cell Host Microbe 2: 328-339, 2007.
-
(2007)
Cell Host Microbe
, vol.2
, pp. 328-339
-
-
Peterson, D.A.1
McNulty, N.P.2
Guruge, J.L.3
Gordon, J.I.4
-
54
-
-
80054886632
-
Topiary Explorer: Visualizing large phylogenetic trees with environmental metadata
-
Pirrung M, Kennedy R, Caporaso JG, Stombaugh J, Wendel D, Knight R. Topiary Explorer: visualizing large phylogenetic trees with environmental metadata. Bioinformatics 27: 3067-3069, 2011.
-
(2011)
Bioinformatics
, vol.27
, pp. 3067-3069
-
-
Pirrung, M.1
Kennedy, R.2
Caporaso, J.G.3
Stombaugh, J.4
Wendel, D.5
Knight, R.6
-
55
-
-
78149283854
-
Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria
-
Png CW, Linden SK, Gilshenan KS, Zoetendal EG, McSweeney CS, Sly LI, McGuckin MA, Florin TH. Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. Am J Gastroenterol 105: 2420-2428, 2010.
-
(2010)
Am J Gastroenterol
, vol.105
, pp. 2420-2428
-
-
Png, C.W.1
Linden, S.K.2
Gilshenan, K.S.3
Zoetendal, E.G.4
McSweeney, C.S.5
Sly, L.I.6
McGuckin, M.A.7
Florin, T.H.8
-
56
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26: 1641-1650, 2009.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
57
-
-
0017381987
-
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon
-
Salyers AA, Vercellotti JR, West SE, Wilkins TD. Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon. Appl Environ Microbiol 33: 319-322, 1977.
-
(1977)
Appl Environ Microbiol
, vol.33
, pp. 319-322
-
-
Salyers, A.A.1
Vercellotti, J.R.2
West, S.E.3
Wilkins, T.D.4
-
58
-
-
33745002519
-
Whole-genome transcription profiling reveals genes up-regulated by growth on fucose in the human gut bacterium Roseburia inulinivorans
-
Scott KP, Martin JC, Campbell G, Mayer CD, Flint HJ. Whole-genome transcription profiling reveals genes up-regulated by growth on fucose in the human gut bacterium "Roseburia inulinivorans". J Bacteriol 188: 4340-4349, 2006.
-
(2006)
J Bacteriol
, vol.188
, pp. 4340-4349
-
-
Scott, K.P.1
Martin, J.C.2
Campbell, G.3
Mayer, C.D.4
Flint, H.J.5
-
59
-
-
15544376418
-
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
-
Sonnenburg JL, Xu J, Leip DD, Chen CH, Westover BP, Weatherford J, Buhler JD, Gordon JI. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307: 1955-1959, 2005.
-
(2005)
Science
, vol.307
, pp. 1955-1959
-
-
Sonnenburg, J.L.1
Xu, J.2
Leip, D.D.3
Chen, C.H.4
Westover, B.P.5
Weatherford, J.6
Buhler, J.D.7
Gordon, J.I.8
-
60
-
-
70349905090
-
Response of gut microbiota to fasting and hibernation in Syrian hamsters
-
Sonoyama K, Fujiwara R, Takemura N, Ogasawara T, Watanabe J, Ito H, Morita T. Response of gut microbiota to fasting and hibernation in Syrian hamsters. Appl Environ Microbiol 75: 6451-6456, 2009.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6451-6456
-
-
Sonoyama, K.1
Fujiwara, R.2
Takemura, N.3
Ogasawara, T.4
Watanabe, J.5
Ito, H.6
Morita, T.7
-
61
-
-
84862640742
-
Iga synthesis: A form of functional immune adaptation extending beyond gut
-
Sutherland DB, Fagarasan S. Iga synthesis: a form of functional immune adaptation extending beyond gut. Curr Opin Immunol 24: 1-8, 2012.
-
(2012)
Curr Opin Immunol
, vol.24
, pp. 1-8
-
-
Sutherland, D.B.1
Fagarasan, S.2
-
62
-
-
0033004028
-
Segmented filamentous bacteria are potent stimuli of a physiologically normal state of the murine gut mucosal immune system
-
Talham GL, Jiang HQ, Bos NA, Cebra JJ. Segmented filamentous bacteria are potent stimuli of a physiologically normal state of the murine gut mucosal immune system. Infect Immun 67: 1992-2000, 1999.
-
(1999)
Infect Immun
, vol.67
, pp. 1992-2000
-
-
Talham, G.L.1
Jiang, H.Q.2
Bos, N.A.3
Cebra, J.J.4
-
63
-
-
79958056338
-
The host selects mucosal and luminal associations of coevolved gut micro organisms: A novel concept
-
Van den Abbeele P, Van de Wiele T, Verstraete W, Possemiers S. The host selects mucosal and luminal associations of coevolved gut micro organisms: a novel concept. FEMS Microbiol Rev 35: 681-1385, 2011.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 681-1385
-
-
Van den, A.P.1
Van de, W.T.2
Verstraete, W.3
Possemiers, S.4
-
64
-
-
79952294582
-
The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes
-
van Passel MW, Kant R, Zoetendal EG, Plugge CM, Derrien M, Malfatti SA, Chain PS, Woyke T, Palva A, de Vos WM, Smidt H. The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes. PLoS One 6: e16876, 2011.
-
(2011)
PLoS One
, vol.6
-
-
van Passel, M.W.1
Kant, R.2
Zoetendal, E.G.3
Plugge, C.M.4
Derrien, M.5
Malfatti, S.A.6
Chain, P.S.7
Woyke, T.8
Palva, A.9
de Vos, W.M.10
Smidt, H.11
-
65
-
-
77951087292
-
The gut microbiota modulates host energy and lipid metabolism in mice
-
Velagapudi VR, Hezaveh R, Reigstad CS, Gopalacharyulu PV, Yetukuri L, Islam S, Felin J, Perkins R, Boren J, Oresic M, Backhed F. The gut microbiota modulates host energy and lipid metabolism in mice. J Lipid Res 51: 1101-1112, 2010.
-
(2010)
J Lipid Res
, vol.51
, pp. 1101-1112
-
-
Velagapudi, V.R.1
Hezaveh, R.2
Reigstad, C.S.3
Gopalacharyulu, P.V.4
Yetukuri, L.5
Islam, S.6
Felin, J.7
Perkins, R.8
Boren, J.9
Oresic, M.10
Backhed, F.11
-
66
-
-
80051856839
-
The human gut microbiome: Ecology and recent evolutionary changes
-
Walter J, Ley R. The human gut microbiome: ecology and recent evolutionary changes. Annu Rev Microbiol 65: 411-429, 2011.
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 411-429
-
-
Walter, J.1
Ley, R.2
-
67
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267, 2007.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
|