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Volumn 33, Issue 2, 2013, Pages 360-370

The SnAC domain of SWI/SNF is a histone anchor required for remodeling

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; HISTONE; UNCOUPLING PROTEIN;

EID: 84871880082     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.00922-12     Document Type: Article
Times cited : (44)

References (46)
  • 1
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier CR, Cairns BR. 2009. The biology of chromatin remodeling complexes. Annu. Rev. Biochem. 78:273-304.
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 2
    • 34147102171 scopus 로고    scopus 로고
    • Mechanisms of ATP dependent chromatin remodeling
    • Gangaraju VK, Bartholomew B. 2007. Mechanisms of ATP dependent chromatin remodeling. Mutat. Res. 618:3-17.
    • (2007) Mutat. Res. , vol.618 , pp. 3-17
    • Gangaraju, V.K.1    Bartholomew, B.2
  • 4
    • 0024344173 scopus 로고
    • Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes
    • Gorbalenya AE, Koonin EV, Donchenko AP, Blinov VM. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17:4713-4730.
    • (1989) Nucleic Acids Res. , vol.17
    • Gorbalenya, A.E.1    Koonin, E.V.2    Donchenko, A.P.3    Blinov, V.M.4
  • 5
    • 34548638261 scopus 로고    scopus 로고
    • Structure and mechanism of helicases and nucleic acid translocases
    • Singleton MR, Dillingham MS, Wigley DB. 2007. Structure and mechanism of helicases and nucleic acid translocases. Annu. Rev. Biochem. 76:23-50.
    • (2007) Annu. Rev. Biochem. , vol.76 , pp. 23-50
    • Singleton, M.R.1    Dillingham, M.S.2    Wigley, D.B.3
  • 6
    • 0037102562 scopus 로고    scopus 로고
    • Chromatin remodeling by RSC involves ATP-dependent DNA translocation
    • Saha A, Wittmeyer J, Cairns BR. 2002. Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev. 16:2120-2134.
    • (2002) Genes Dev. , vol.16 , pp. 2120-2134
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 7
    • 36849004886 scopus 로고    scopus 로고
    • Domain architecture of the catalytic subunit in the ISW2-nucleosome complex
    • Dang W, Bartholomew B. 2007. Domain architecture of the catalytic subunit in the ISW2-nucleosome complex. Mol. Cell. Biol. 27:8306- 8317.
    • (2007) Mol. Cell. Biol. , vol.27
    • Dang, W.1    Bartholomew, B.2
  • 9
    • 26944461283 scopus 로고    scopus 로고
    • Chromatin remodeling through directional DNA translocation from an internal nucleosomal site
    • Saha A, Wittmeyer J, Cairns BR. 2005. Chromatin remodeling through directional DNA translocation from an internal nucleosomal site. Nat. Struct. Mol. Biol. 12:747-755.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 747-755
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 10
    • 33744916194 scopus 로고    scopus 로고
    • Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome
    • Zofall M, Persinger J, Kassabov SR, Bartholomew B. 2006. Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nat. Struct. Mol. Biol. 13:339-346.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 339-346
    • Zofall, M.1    Persinger, J.2    Kassabov, S.R.3    Bartholomew, B.4
  • 12
    • 79958858041 scopus 로고    scopus 로고
    • The RSC chromatin remodelling ATPase translocates DNA with high force and small step size
    • Sirinakis G, Clapier CR, Gao Y, Viswanathan R, Cairns BR, Zhang Y. 2011. The RSC chromatin remodelling ATPase translocates DNA with high force and small step size. EMBO J. 30:2364-2372.
    • (2011) EMBO J. , vol.30 , pp. 2364-2372
    • Sirinakis, G.1    Clapier, C.R.2    Gao, Y.3    Viswanathan, R.4    Cairns, B.R.5    Zhang, Y.6
  • 15
    • 0034284365 scopus 로고    scopus 로고
    • Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase
    • Datwyler SA, Meares CF. 2000. Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase. Trends Biochem. Sci. 25:408-414.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 408-414
    • Datwyler, S.A.1    Meares, C.F.2
  • 16
    • 82255164427 scopus 로고    scopus 로고
    • A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling
    • Sen P, Ghosh S, Pugh BF, Bartholomew B. 2011. A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling. Nucleic Acids Res. 39:9155-9166.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 9155-9166
    • Sen, P.1    Ghosh, S.2    Pugh, B.F.3    Bartholomew, B.4
  • 18
    • 0036837670 scopus 로고    scopus 로고
    • High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2
    • Kassabov SR, Henry NM, Zofall M, Tsukiyama T, Bartholomew B. 2002. High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2. Mol. Cell. Biol. 22:7524-7534.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 7524-7534
    • Kassabov, S.R.1    Henry, N.M.2    Zofall, M.3    Tsukiyama, T.4    Bartholomew, B.5
  • 20
    • 67649112269 scopus 로고    scopus 로고
    • Site-directed DNA crosslinking of large multisubunit protein-DNA complexes
    • Persinger J, Bartholomew B. 2009. Site-directed DNA crosslinking of large multisubunit protein-DNA complexes. Methods Mol. Biol. 543: 453-474.
    • (2009) Methods Mol. Biol. , vol.543 , pp. 453-474
    • Persinger, J.1    Bartholomew, B.2
  • 21
    • 0033377358 scopus 로고    scopus 로고
    • Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/ SNF
    • Sengupta SM, Persinger J, Bartholomew B, Peterson CL. 1999. Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/ SNF. Methods 19:434-446.
    • (1999) Methods , vol.19 , pp. 434-446
    • Sengupta, S.M.1    Persinger, J.2    Bartholomew, B.3    Peterson, C.L.4
  • 22
    • 16944363563 scopus 로고    scopus 로고
    • Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling
    • Persinger J, Bartholomew B. 1996. Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling. J. Biol. Chem. 271:33039-33046.
    • (1996) J. Biol. Chem. , vol.271 , pp. 33039-33046
    • Persinger, J.1    Bartholomew, B.2
  • 25
    • 80052651122 scopus 로고    scopus 로고
    • Diversity of operation in ATPdependent chromatin remodelers
    • Hota SK, Bartholomew B. 2011. Diversity of operation in ATPdependent chromatin remodelers. Biochim. Biophys. Acta 1809:476-487.
    • (2011) Biochim. Biophys. Acta , vol.1809 , pp. 476-487
    • Hota, S.K.1    Bartholomew, B.2
  • 26
    • 1642290007 scopus 로고    scopus 로고
    • Measurement of histone-DNA interaction free energy in nucleosomes
    • Thastrom A, Lowary PT, Widom J. 2004. Measurement of histone-DNA interaction free energy in nucleosomes. Methods 33:33- 44.
    • (2004) Methods , vol.33
    • Thastrom, A.1    Lowary, P.T.2    Widom, J.3
  • 27
    • 0033039285 scopus 로고    scopus 로고
    • Preparation of nucleosome core particle from recombinant histones
    • Luger K, Rechsteiner TJ, Richmond TJ. 1999. Preparation of nucleosome core particle from recombinant histones. Methods Enzymol. 304:3-19.
    • (1999) Methods Enzymol. , vol.304 , pp. 3-19
    • Luger, K.1    Rechsteiner, T.J.2    Richmond, T.J.3
  • 28
    • 0033528675 scopus 로고    scopus 로고
    • Mapping protein-protein interactions with a library of tethered cutting reagents: the binding site of sigma 70 on Escherichia coli RNA polymerase
    • Traviglia SL, Datwyler SA, Meares CF. 1999. Mapping protein-protein interactions with a library of tethered cutting reagents: the binding site of sigma 70 on Escherichia coli RNA polymerase. Biochemistry 38:4259- 4265.
    • (1999) Biochemistry , vol.38
    • Traviglia, S.L.1    Datwyler, S.A.2    Meares, C.F.3
  • 29
    • 0033619725 scopus 로고    scopus 로고
    • Targeted protein footprinting: where different transcription factors bind to RNA polymerase
    • Traviglia SL, Datwyler SA, Yan D, Ishihama A, Meares CF. 1999. Targeted protein footprinting: where different transcription factors bind to RNA polymerase. Biochemistry 38:15774-15778.
    • (1999) Biochemistry , vol.38 , pp. 15774-15778
    • Traviglia, S.L.1    Datwyler, S.A.2    Yan, D.3    Ishihama, A.4    Meares, C.F.5
  • 30
    • 0141992120 scopus 로고    scopus 로고
    • Binding of TFIIB to RNA polymerase II: mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex
    • Chen HT, Hahn S. 2003. Binding of TFIIB to RNA polymerase II: mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex. Mol. Cell 12:437- 447.
    • (2003) Mol. Cell , vol.12
    • Chen, H.T.1    Hahn, S.2
  • 31
    • 18844457346 scopus 로고    scopus 로고
    • X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA
    • Durr H, Korner C, Muller M, Hickmann V, Hopfner KP. 2005. X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA. Cell 121:363-373.
    • (2005) Cell , vol.121 , pp. 363-373
    • Durr, H.1    Korner, C.2    Muller, M.3    Hickmann, V.4    Hopfner, K.P.5
  • 32
    • 2942561969 scopus 로고    scopus 로고
    • Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling
    • Kagalwala MN, Glaus BJ, Dang W, Zofall M, Bartholomew B. 2004. Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling. EMBO J. 23:2092-2104.
    • (2004) EMBO J. , vol.23 , pp. 2092-2104
    • Kagalwala, M.N.1    Glaus, B.J.2    Dang, W.3    Zofall, M.4    Bartholomew, B.5
  • 34
    • 21744434032 scopus 로고    scopus 로고
    • A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling
    • Smith CL, Peterson CL. 2005. A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol. Cell. Biol. 25: 5880-5892.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 5880-5892
    • Smith, C.L.1    Peterson, C.L.2
  • 37
    • 0028925960 scopus 로고
    • Structure and function of the UvrB protein
    • Hsu DS, Kim ST, Sun Q, Sancar A. 1995. Structure and function of the UvrB protein. J. Biol. Chem. 270:8319-8327.
    • (1995) J. Biol. Chem. , vol.270 , pp. 8319-8327
    • Hsu, D.S.1    Kim, S.T.2    Sun, Q.3    Sancar, A.4
  • 38
    • 0028066920 scopus 로고
    • Helicase motifs V and VI of the Escherichia coli UvrB protein of the UvrABC endonuclease are essential for the formation of the preincision complex
    • Moolenaar GF, Visse R, Ortiz-Buysse M, Goosen N, van de Putte P. 1994. Helicase motifs V and VI of the Escherichia coli UvrB protein of the UvrABC endonuclease are essential for the formation of the preincision complex. J. Mol. Biol. 240:294-307.
    • (1994) J. Mol. Biol. , vol.240 , pp. 294-307
    • Moolenaar, G.F.1    Visse, R.2    Ortiz-buysse, M.3    Goosen, N.4    van de Putte, P.5
  • 39
    • 0033515425 scopus 로고    scopus 로고
    • Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
    • Velankar SS, Soultanas P, Dillingham MS, Subramanya HS, Wigley DB. 1999. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97:75- 84.
    • (1999) Cell , vol.97
    • Velankar, S.S.1    Soultanas, P.2    Dillingham, M.S.3    Subramanya, H.S.4    Wigley, D.B.5
  • 41
    • 0032214123 scopus 로고    scopus 로고
    • Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF
    • Cairns BR, Erdjument-Bromage H, Tempst P, Winston F, Kornberg RD. 1998. Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF. Mol. Cell 2:639-651.
    • (1998) Mol. Cell , vol.2 , pp. 639-651
    • Cairns, B.R.1    Erdjument-bromage, H.2    Tempst, P.3    Winston, F.4    Kornberg, R.D.5
  • 42
    • 0032508694 scopus 로고    scopus 로고
    • Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family
    • Peterson CL, Zhao Y, Chait BT. 1998. Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family. J. Biol. Chem. 273:23641-23644.
    • (1998) J. Biol. Chem. , vol.273 , pp. 23641-23644
    • Peterson, C.L.1    Zhao, Y.2    Chait, B.T.3
  • 43
    • 0037937603 scopus 로고    scopus 로고
    • The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling
    • Szerlong H, Saha A, Cairns BR. 2003. The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling. EMBO J. 22:3175-3187.
    • (2003) EMBO J. , vol.22 , pp. 3175-3187
    • Szerlong, H.1    Saha, A.2    Cairns, B.R.3
  • 46
    • 0028791330 scopus 로고
    • Mechanism of protien access to specific DNA sequences in chromatin: a dynamic equillibrium model for gene regulation
    • Polach KJ, Wisdom J. 1995. Mechanism of protien access to specific DNA sequences in chromatin: a dynamic equillibrium model for gene regulation. J. Mol. Biol. 254:130-149.
    • (1995) J. Mol. Biol. , vol.254 , pp. 130-149
    • Polach, K.J.1    Wisdom, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.