A transferable sucrose utilization approach for non-sucrose-utilizing Escherichia coli strains

Biotechnology Advances

Volumn 30, Issue 5, 2012, Pages 1001-1010

  Bruschi, Michele ^a   Boyes, Simon J ^a   Sugiarto, Haryadi ^a   Nielsen, Lars K ^a   Vickers, Claudia E ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Chromosomal integration; Csc genes; Escherichia coli; Escherichia coli W; Industrial bioprocess; Transferrable sucrose utilization

Indexed keywords

A-CARBON; BIOPROCESSES; CHROMOSOMAL INTEGRATION; E. COLI; INDUSTRIAL FERMENTATION; INDUSTRIAL STRAIN; LOW GROWTH RATE;

DNA; ESCHERICHIA COLI; GENES; GLUCOSE; INDUSTRY; INTEGRATION; STRAIN;

SUGAR (SUCROSE);

SUCROSE;

BIOENGINEERING; CARBOHYDRATE; CATABOLISM; CHROMOSOME; COLIFORM BACTERIUM; FERMENTATION; GENE EXPRESSION; GROWTH RATE; PHENOTYPE; PLASMID;

ARTICLE; BIOMASS; BIOREACTOR; BIOTECHNOLOGY; CULTURE MEDIUM; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; METHODOLOGY; MICROBIOLOGY;

BIOMASS; BIOREACTORS; BIOTECHNOLOGY; CULTURE MEDIA; ESCHERICHIA COLI; MUTAGENESIS, INSERTIONAL; SUCROSE;

ESCHERICHIA COLI;

EID: 84864945585     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2011.08.019     Document Type: Article

References (41)

1. Alaeddinoglu N.G., Charles H.P. Transfer of a gene for sucrose utilization into Escherichia coli K12, and consequent failure of expression of genes for D-serine utilization. J Gen Microbiol 1979, 110:47-59.
2. Archer C.T., Kim J.F., Jeong H., Park J.H., Vickers C.E., Lee S.Y., et al. The genome seqeunce of E. coli W ATCC 9637: comparative genome analysis and an improved genome-scale model of E. coli. BMC Genomics 2011, 12.
3. Arifin Y, Sabri S, Sugiarto H, Krömer JO., Vickers CE, Nielsen LK. Deletion of cscR in Escherichia coli W improves growth and poly-3-hydroxyburyrate (PHB) production from sucrose in fed batch culture. J Biotech. in press. doi:. http://doi:10.1016/j.jbiotec.2011.07.003.
4. Bauer A.P., Ludwig W., Schleifer K.H. A novel DNA microarray design for accurate and straightforward identification of Escherichia coli safety and laboratory strains. Syst Appl Microbiol 2008, 31:50-61.
5. Bockmann J., Heuel H., Lengeler J.W. Characterization of a chromosomally encoded, non-PTS metabolic pathway for sucrose utilization in Escherichia coli EC3132. Mol Gen Genet 1992, 235:22-32.
6. Daegelen P., Studier F.W., Lenski R.E., Cure S., Kim J.F. Tracing ancestors and relatives of Escherichia coli B, and the derivation of B Strains REL606 and BL21(DE3). J Mol Biol 2009, 394:634-643.
7. Datsenko K.A., Wanner B.L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 2000, 97:6640-6645.
8. Diaz Ricci J.C., Hernandez M.E. Plasmid effects on Escherichia coli metabolism. Crit Rev Biotechnol 2000, 20:79-108.
9. Dietmair S., Timmins N.E., Gray P.P., Nielsen L.K., Kromer J.O. Towards quantitative metabolomics of mammalian cells: development of a metabolite extraction protocol. Anal Biochem 2010, 404:155-164.
10. Fouet A., Klier A., Rapoport G. Cloning and expression in Escherichia coli of the sucrase gene from Bacillus subtilis. Mol Gen Genet 1982, 186:399-404.
11. Garcia J.L. Cloning in Escherichia coli and molecular analysis of the sucrose system of the Salmonella plasmid SCR-53. Mol Gen Genet 1985, 201:575-577.
12. Gleiser I.E., Bauer S. Growth of Escherichia-coli W to high cell concentration by oxygen level linked control of carbon source concentration. Biotechnol Bioeng 1981, 23:1015-1021.
13. Holt J.G., Kreig N.R., Sneath J.T., Staley J.T., Williams S.T. Bergey's manual of determinative bacteriology 1994, Williams and Wilkins, Philadelphia, PA. 9th ed.
14. IEA Biofuels for transport: an international perspective 2004, International Energy Agency, Paris.
15. Jahreis K., Bentler L., Bockmann J., Hans S., Meyer A., Siepelmeyer J., et al. Adaptation of sucrose metabolism in the Escherichia coli wild-type strain EC3132. J Bacteriol 2002, 184:5307-5316.
16. John G.T., Klimant I., Wittmann C., Heinzle E. Integrated optical sensing of dissolved oxygen in microtiter plates: a novel tool for microbial cultivation. Biotechnol Bioeng 2003, 81:829-836.
17. Jones K.L., Kim S.-W., Keasling J.D. Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria. Metab Eng 2000, 2:328-338.
18. King D., Inderwildi O.R., Williams A. The future of industrial biorefineries 2010, World Economic Forum.
19. Lee J.-W., Choi S., Park J.-H., Vickers C.E., Nielsen L.K., Lee S.-Y. Development of sucrose-utilizing Escherichia coli K-12 strain by cloning β-fructofuranosidases and its application for L-threonine production. Appl Microbiol Biotechnol 2010, 1-9.
20. Lee S.Y., Chang H.N. High cell-density cultivation of Escherichia coli W using sucrose as a carbon source. Biotechnol Lett 1993, 15:971-974.
21. Murphy K.C. Use of bacteriophage λrecombination functions to promote gene replacement in Escherichia coli. J Bacteriol 1998, 180:2063-2071.
22. Olson M.M., Templeton L.J., Suh W., Youderian P., Sariaslani F.S., Gatenby A.A., et al. Production of tyrosine from sucrose or glucose achieved by rapid genetic changes to phenylalanine-producing Escherichia coli strains. Appl Microbiol Biotechnol 2007, 74:1031-1040.
23. 2 from sucrose by Escherichia coli strains carrying the pUR400 plasmid, which encodes invertase activity. Biotechnol Lett 2004, 26:1879-1883.
24. Reid S.J., Abratt V.R. Sucrose utilisation in bacteria: genetic organisation and regulation. Appl Microbiol Biotechnol 2005, 67:312-321.
25. Renouf M.A., Wegener M.K., Nielsen L.K. An environmental life cycle assessment comparing Australian sugarcane with US corn and UK sugar beet as producers of sugars for fermentation. Biomass Bioenergy 2008, 32:1144-1155.
26. Rude M.A., Schirmer A. New microbial fuels: a biotech perspective. Curr Opin Microbiol 2009, 12:274-281.
27. Sabri S, Nielsen LK, Vickers CE. Deletion and over-expression analyses of csc genes for sucrose utilization in E. coli W. In preparation.
28. Sahin-Toth M., Lengyel Z., Tsunekawa H. Cloning, sequencing, and expression of cscA invertase from Escherichia coli B-62. Can J Microbiol 1999, 45:418-422.
29. Sambrook J., Russell D.W. Molecular cloning: a laboratory manual 2001, Cold Spring Harbour Laboratory Press, New York. 3rd Ed.
30. Scholle R.R., Steffen H.E., Goodman H.J.K., Woods D.R. Expression and regulation of a Bacteroides fragilis sucrose utilization system cloned in Escherichia coli. Appl Environ Microbiol 1990, 56:1944-1948.
31. Scholle R.R., Coyne V.E., Maharaj R., Robb F.T., Woods D.R. Expression and regulation of a Vibrio alginolyticus sucrose utilization system cloned in Escherichia coli. J Bacteriol 1987, 169:2685-2690.
32. Schuerman P.L., Liu J.S., Mou H., Dandekar A.M. 3-Ketoglycoside-mediated metabolism of sucrose in E. coli as conferred by genes from Agrobacterium tumefaciens. Appl Microbiol Biotechnol 1997, 47:560-565.
33. Shiloach J., Bauer S. High-yield growth of Escherichia coli at different temperatures in a bench scale fermentor. Biotechnol Bioeng 1975, 17:227-239.
34. Shukla V.B., Zhou S., Yomano L.P., Shanmugam K.T., Preston J.F., Ingram L.O. Production of D(-)-lactate from sucrose and molasses. Biotechnol Lett 2004, 26:689-693.
35. Sprenger G.A., Lengeler J.W. Analysis of sucrose catabolism in Klebsiella pneumoniae and in Scr+ derivatives of Escherichia coli K12. J Gen Microbiol 1988, 134:1635-1644.
36. Tsunekawa H., Azuma S., Okabe M., Okamoto R., Aiba S. Acquisition of a sucrose utilization system in Escherichia coli K-12 derivatives and its application to industry. Appl Environ Microbiol 1992, 58:2081-2088.
37. USDA U.S. biobased products: market potential and projections through 2025 2008, United States Department of Agriculture.
38. Velagapudi V.R., Wittmann C., Lengauer T., Talwar P., Heinzle E. Metabolic screening of Saccharomyces cerevisiae single knockout strains reveals unexpected mobilization of metabolic potential. Process Biochem 2006, 41:2170-2179.
39. Wang Z., Xiang L., Shao J., Wegrzyn A., Wegrzyn G. Effects of the presence of ColE1 plasmid DNA in Escherichia coli on the host cell metabolism. Microb Cell Fact 2006, 5:34.
40. Wohlhieter J.A., Lazere J.R., Snellings N.J., Johnson E.M., Synenki R.M., Baron L.S. Characterization of transmissible genetic elements from sucrose-fermenting Salmonella strains. J Bacteriol 1975, 122:401-406.
41. Wong H.H., Lee S.Y. Poly-(3-hydroxybutyrate) production from whey by high-density cultivation of recombinant Escherichia coli. Appl Microbiol Biotechnol 1998, 50:30-33.