메뉴 건너뛰기




Volumn 21, Issue 1, 2013, Pages 23-30

Integrative mobile elements exploiting Xer recombination

Author keywords

Cholera toxin; Chromosome dimer resolution; Lysogenic phage; Tyrosine recombinases

Indexed keywords

BACTERIAL DNA; CIRCULAR DNA; DOUBLE STRANDED DNA; PROTEIN XERC; PROTEIN XERD; RECOMBINASE; UNCLASSIFIED DRUG;

EID: 84871677691     PISSN: 0966842X     EISSN: 18784380     Source Type: Journal    
DOI: 10.1016/j.tim.2012.10.003     Document Type: Review
Times cited : (75)

References (49)
  • 1
    • 0030816550 scopus 로고    scopus 로고
    • The integrase family of tyrosine recombinases: evolution of a conserved active site domain
    • Esposito D., Scocca J.J. The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucleic Acids Res. 1997, 25:3605-3614.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3605-3614
    • Esposito, D.1    Scocca, J.J.2
  • 2
    • 0038659759 scopus 로고    scopus 로고
    • Similarities and differences among 105 members of the Int family of site-specific recombinases
    • Nunes-Duby S.E., et al. Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res. 1998, 26:391-406.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 391-406
    • Nunes-Duby, S.E.1
  • 3
    • 84864810701 scopus 로고    scopus 로고
    • Site-specific recombination systems in filamentous phages
    • Askora A., et al. Site-specific recombination systems in filamentous phages. Mol. Genet. Genomics 2012, 287:525-530.
    • (2012) Mol. Genet. Genomics , vol.287 , pp. 525-530
    • Askora, A.1
  • 4
    • 0001177771 scopus 로고
    • A correlation of ring-shaped chromosomes with variegation in Zea mays
    • McClintock B. A correlation of ring-shaped chromosomes with variegation in Zea mays. Proc. Natl. Acad. Sci. U.S.A. 1932, 18:677-681.
    • (1932) Proc. Natl. Acad. Sci. U.S.A. , vol.18 , pp. 677-681
    • McClintock, B.1
  • 5
    • 0027422093 scopus 로고
    • Two related recombinases are required for site-specific recombination at dif and cer in E. coli K12
    • Blakely G., et al. Two related recombinases are required for site-specific recombination at dif and cer in E. coli K12. Cell 1993, 75:351-361.
    • (1993) Cell , vol.75 , pp. 351-361
    • Blakely, G.1
  • 6
    • 52949114581 scopus 로고    scopus 로고
    • FtsK-dependent dimer resolution on multiple chromosomes in the pathogen Vibrio cholerae
    • Val M-E., et al. FtsK-dependent dimer resolution on multiple chromosomes in the pathogen Vibrio cholerae. PLoS Genet. 2008, 4:e1000201.
    • (2008) PLoS Genet. , vol.4
    • Val, M.-E.1
  • 7
    • 0028225930 scopus 로고
    • Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif
    • Cornet F., et al. Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif. J. Bacteriol. 1994, 176:3188-3195.
    • (1994) J. Bacteriol. , vol.176 , pp. 3188-3195
    • Cornet, F.1
  • 8
    • 0025602270 scopus 로고
    • Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases
    • Colloms S.D., et al. Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases. J. Bacteriol. 1990, 172:6973-6980.
    • (1990) J. Bacteriol. , vol.172 , pp. 6973-6980
    • Colloms, S.D.1
  • 9
    • 0033636814 scopus 로고    scopus 로고
    • FtsK functions in the processing of a Holliday junction intermediate during bacterial chromosome segregation
    • Barre F.X., et al. FtsK functions in the processing of a Holliday junction intermediate during bacterial chromosome segregation. Genes Dev. 2000, 14:2976-2988.
    • (2000) Genes Dev. , vol.14 , pp. 2976-2988
    • Barre, F.X.1
  • 10
    • 34250005713 scopus 로고    scopus 로고
    • FtsK, a literate chromosome segregation machine
    • Bigot S., et al. FtsK, a literate chromosome segregation machine. Mol. Microbiol. 2007, 64:1434-1441.
    • (2007) Mol. Microbiol. , vol.64 , pp. 1434-1441
    • Bigot, S.1
  • 11
    • 33750595603 scopus 로고    scopus 로고
    • Oriented loading of FtsK on KOPS
    • Bigot S., et al. Oriented loading of FtsK on KOPS. Nat. Struct. Mol. Biol. 2006, 13:1026-1028.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 1026-1028
    • Bigot, S.1
  • 12
    • 78650535019 scopus 로고    scopus 로고
    • Sequence-specific assembly of FtsK hexamers establishes directional translocation on DNA
    • Graham J.E., et al. Sequence-specific assembly of FtsK hexamers establishes directional translocation on DNA. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:20263-20268.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 20263-20268
    • Graham, J.E.1
  • 13
    • 60349124253 scopus 로고    scopus 로고
    • KOPS-guided DNA translocation by FtsK safeguards Escherichia coli chromosome segregation
    • Sivanathan V., et al. KOPS-guided DNA translocation by FtsK safeguards Escherichia coli chromosome segregation. Mol. Microbiol. 2009, 71:1031-1042.
    • (2009) Mol. Microbiol. , vol.71 , pp. 1031-1042
    • Sivanathan, V.1
  • 14
    • 79960223131 scopus 로고    scopus 로고
    • Activation of XerCD-dif recombination by the FtsK DNA translocase
    • Grainge I., et al. Activation of XerCD-dif recombination by the FtsK DNA translocase. Nucleic Acids Res. 2011, 39:5140-5148.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5140-5148
    • Grainge, I.1
  • 15
    • 33645462819 scopus 로고    scopus 로고
    • Dissection of a functional interaction between the DNA translocase, FtsK, and the XerD recombinase
    • Yates J., et al. Dissection of a functional interaction between the DNA translocase, FtsK, and the XerD recombinase. Mol. Microbiol. 2006, 59:1754-1766.
    • (2006) Mol. Microbiol. , vol.59 , pp. 1754-1766
    • Yates, J.1
  • 16
    • 0037169328 scopus 로고    scopus 로고
    • FtsK is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases
    • Aussel L., et al. FtsK is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases. Cell 2002, 108:195-205.
    • (2002) Cell , vol.108 , pp. 195-205
    • Aussel, L.1
  • 17
    • 78649592020 scopus 로고    scopus 로고
    • Multiple regions along the Escherichia coli FtsK protein are implicated in cell division
    • Dubarry N., et al. Multiple regions along the Escherichia coli FtsK protein are implicated in cell division. Mol. Mic. 2010, 78:1088-1100.
    • (2010) Mol. Mic. , vol.78 , pp. 1088-1100
    • Dubarry, N.1
  • 18
    • 76349104603 scopus 로고    scopus 로고
    • Fully efficient chromosome dimer resolution in Escherichia coli cells lacking the integral membrane domain of FtsK
    • Dubarry N., Barre F.X. Fully efficient chromosome dimer resolution in Escherichia coli cells lacking the integral membrane domain of FtsK. EMBO J. 2010, 29:597-605.
    • (2010) EMBO J. , vol.29 , pp. 597-605
    • Dubarry, N.1    Barre, F.X.2
  • 19
    • 58149142956 scopus 로고    scopus 로고
    • Asymmetry of chromosome Replichores renders the DNA translocase activity of FtsK essential for cell division and cell shape maintenance in Escherichia coli
    • Lesterlin C., et al. Asymmetry of chromosome Replichores renders the DNA translocase activity of FtsK essential for cell division and cell shape maintenance in Escherichia coli. PLoS Genet. 2008, 4:e1000288.
    • (2008) PLoS Genet. , vol.4
    • Lesterlin, C.1
  • 20
    • 42549161198 scopus 로고    scopus 로고
    • Delayed activation of Xer recombination at dif by FtsK during septum assembly in Escherichia coli
    • Kennedy S.P., et al. Delayed activation of Xer recombination at dif by FtsK during septum assembly in Escherichia coli. Mol. Microbiol. 2008, 68:1018-1028.
    • (2008) Mol. Microbiol. , vol.68 , pp. 1018-1028
    • Kennedy, S.P.1
  • 21
    • 0030943173 scopus 로고    scopus 로고
    • Topological selectivity in Xer site-specific recombination
    • Colloms S.D., et al. Topological selectivity in Xer site-specific recombination. Cell 1997, 88:855-864.
    • (1997) Cell , vol.88 , pp. 855-864
    • Colloms, S.D.1
  • 22
    • 0037099579 scopus 로고    scopus 로고
    • Accessory factors determine the order of strand exchange in Xer recombination at psi
    • Bregu M., et al. Accessory factors determine the order of strand exchange in Xer recombination at psi. Embo J. 2002, 21:3888-3897.
    • (2002) Embo J. , vol.21 , pp. 3888-3897
    • Bregu, M.1
  • 23
    • 23744489154 scopus 로고    scopus 로고
    • The single stranded genome of phage CTX is the form used for integration into the genome of Vibrio cholerae
    • Val M-E., et al. The single stranded genome of phage CTX is the form used for integration into the genome of Vibrio cholerae. Mol. Cell 2005, 19:559-566.
    • (2005) Mol. Cell , vol.19 , pp. 559-566
    • Val, M.-E.1
  • 24
    • 29244454620 scopus 로고    scopus 로고
    • Integron cassette insertion: a recombination process involving a folded single strand substrate
    • Bouvier M., et al. Integron cassette insertion: a recombination process involving a folded single strand substrate. Embo J. 2005, 24:4356-4367.
    • (2005) Embo J. , vol.24 , pp. 4356-4367
    • Bouvier, M.1
  • 25
    • 77749297944 scopus 로고    scopus 로고
    • Molecular keys of the tropism of integration of the cholera toxin phage
    • Das B., et al. Molecular keys of the tropism of integration of the cholera toxin phage. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:4377-4382.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 4377-4382
    • Das, B.1
  • 26
    • 33646337441 scopus 로고    scopus 로고
    • Structural basis for broad DNA-specificity in integron recombination
    • MacDonald D., et al. Structural basis for broad DNA-specificity in integron recombination. Nature 2006, 440:1157-1162.
    • (2006) Nature , vol.440 , pp. 1157-1162
    • MacDonald, D.1
  • 27
    • 84866948138 scopus 로고    scopus 로고
    • Replicative resolution of integron cassette insertion
    • Loot C., et al. Replicative resolution of integron cassette insertion. Nucleic Acids Res. 2012, 40:8361-8370.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 8361-8370
    • Loot, C.1
  • 28
    • 0034595513 scopus 로고    scopus 로고
    • Coordinated control of XerC and XerD catalytic activities during Holliday junction resolution
    • Arciszewska L.K., et al. Coordinated control of XerC and XerD catalytic activities during Holliday junction resolution. J. Mol. Biol. 2000, 299:391-403.
    • (2000) J. Mol. Biol. , vol.299 , pp. 391-403
    • Arciszewska, L.K.1
  • 29
    • 0033382191 scopus 로고    scopus 로고
    • Reciprocal control of catalysis by the tyrosine recombinases XerC and XerD: an enzymatic switch in site-specific recombination
    • Hallet B., et al. Reciprocal control of catalysis by the tyrosine recombinases XerC and XerD: an enzymatic switch in site-specific recombination. Mol. Cell 1999, 4:949-959.
    • (1999) Mol. Cell , vol.4 , pp. 949-959
    • Hallet, B.1
  • 30
    • 84866380537 scopus 로고    scopus 로고
    • Holliday junction affinity of the base excision repair factor Endo III contributes to cholera toxin phage integration
    • Bischerour J., et al. Holliday junction affinity of the base excision repair factor Endo III contributes to cholera toxin phage integration. EMBO J. 2012, 31:3757-3767.
    • (2012) EMBO J. , vol.31 , pp. 3757-3767
    • Bischerour, J.1
  • 31
    • 0034902818 scopus 로고    scopus 로고
    • Evidence for a rolling-circle mechanism of phage DNA synthesis from both replicative and integrated forms of CTXphi
    • Moyer K.E., et al. Evidence for a rolling-circle mechanism of phage DNA synthesis from both replicative and integrated forms of CTXphi. Mol. Microbiol. 2001, 41:311-323.
    • (2001) Mol. Microbiol. , vol.41 , pp. 311-323
    • Moyer, K.E.1
  • 32
    • 79952296023 scopus 로고    scopus 로고
    • VGJφ-integration and excision mechanisms contribute to the genetic diversity of Vibrio cholerae epidemic strains
    • Das B., et al. VGJφ-integration and excision mechanisms contribute to the genetic diversity of Vibrio cholerae epidemic strains. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:2516-2521.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 2516-2521
    • Das, B.1
  • 33
    • 78049303152 scopus 로고    scopus 로고
    • Satellite phage TLCphi enables toxigenic conversion by CTX phage through dif site alteration
    • Hassan F., et al. Satellite phage TLCphi enables toxigenic conversion by CTX phage through dif site alteration. Nature 2010, 467:982-985.
    • (2010) Nature , vol.467 , pp. 982-985
    • Hassan, F.1
  • 34
    • 76849085872 scopus 로고    scopus 로고
    • VEJ{phi}, a novel filamentous phage of Vibrio cholerae able to transduce the cholera toxin genes
    • Campos J., et al. VEJ{phi}, a novel filamentous phage of Vibrio cholerae able to transduce the cholera toxin genes. Microbiology 2010, 156:108-115.
    • (2010) Microbiology , vol.156 , pp. 108-115
    • Campos, J.1
  • 35
    • 0344235387 scopus 로고    scopus 로고
    • Novel type of specialized transduction for CTX phi or its satellite phage RS1 mediated by filamentous phage VGJ phi in Vibrio cholerae
    • Campos J., et al. Novel type of specialized transduction for CTX phi or its satellite phage RS1 mediated by filamentous phage VGJ phi in Vibrio cholerae. J. Bacteriol. 2003, 185:7231-7240.
    • (2003) J. Bacteriol. , vol.185 , pp. 7231-7240
    • Campos, J.1
  • 36
    • 0141615773 scopus 로고    scopus 로고
    • VGJ phi, a novel filamentous phage of Vibrio cholerae, integrates into the same chromosomal site as CTX phi
    • Campos J., et al. VGJ phi, a novel filamentous phage of Vibrio cholerae, integrates into the same chromosomal site as CTX phi. J. Bacteriol. 2003, 185:5685-5696.
    • (2003) J. Bacteriol. , vol.185 , pp. 5685-5696
    • Campos, J.1
  • 37
    • 0031776324 scopus 로고    scopus 로고
    • Replication and integration of a Vibrio cholerae cryptic plasmid linked to the CTX prophage
    • Rubin E.J., et al. Replication and integration of a Vibrio cholerae cryptic plasmid linked to the CTX prophage. Mol. Microbiol. 1998, 28:1247-1254.
    • (1998) Mol. Microbiol. , vol.28 , pp. 1247-1254
    • Rubin, E.J.1
  • 38
    • 70349304423 scopus 로고    scopus 로고
    • Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
    • Chun J., et al. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:15442-15447.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 15442-15447
    • Chun, J.1
  • 39
    • 0030057090 scopus 로고    scopus 로고
    • Lysogenic conversion by a filamentous phage encoding cholera toxin
    • Waldor M.K., Mekalanos J.J. Lysogenic conversion by a filamentous phage encoding cholera toxin. Science 1996, 272:1910-1914.
    • (1996) Science , vol.272 , pp. 1910-1914
    • Waldor, M.K.1    Mekalanos, J.J.2
  • 40
    • 0037030684 scopus 로고    scopus 로고
    • Filamentous phage integration requires the host recombinases XerC and XerD
    • Huber K.E., Waldor M.K. Filamentous phage integration requires the host recombinases XerC and XerD. Nature 2002, 417:656-659.
    • (2002) Nature , vol.417 , pp. 656-659
    • Huber, K.E.1    Waldor, M.K.2
  • 41
    • 80053133499 scopus 로고    scopus 로고
    • Evidence for several waves of global transmission in the seventh cholera pandemic
    • Mutreja A., et al. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 2011, 477:462-465.
    • (2011) Nature , vol.477 , pp. 462-465
    • Mutreja, A.1
  • 42
    • 79952940896 scopus 로고    scopus 로고
    • Molecular mechanism of acquisition of the cholera toxin genes
    • Das B., et al. Molecular mechanism of acquisition of the cholera toxin genes. Indian J. Med. Res. 2011, 133:195-200.
    • (2011) Indian J. Med. Res. , vol.133 , pp. 195-200
    • Das, B.1
  • 43
    • 33846686822 scopus 로고    scopus 로고
    • A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus
    • Derbise A., et al. A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus. Mol. Microbiol. 2007, 63:1145-1157.
    • (2007) Mol. Microbiol. , vol.63 , pp. 1145-1157
    • Derbise, A.1
  • 44
    • 0036838014 scopus 로고    scopus 로고
    • Conserved filamentous prophage in Escherichia coli O18:K1:H7 and Yersinia pestis biovar orientalis
    • Gonzalez M.D., et al. Conserved filamentous prophage in Escherichia coli O18:K1:H7 and Yersinia pestis biovar orientalis. J. Bacteriol. 2002, 184:6050-6055.
    • (2002) J. Bacteriol. , vol.184 , pp. 6050-6055
    • Gonzalez, M.D.1
  • 45
    • 0024250708 scopus 로고
    • Nucleotide sequences involved in the neolysogenic insertion of filamentous phage Cf16-v1 into the Xanthomonas campestris pv. citri chromosome
    • Dai H., et al. Nucleotide sequences involved in the neolysogenic insertion of filamentous phage Cf16-v1 into the Xanthomonas campestris pv. citri chromosome. Virology 1988, 167:613-620.
    • (1988) Virology , vol.167 , pp. 613-620
    • Dai, H.1
  • 46
    • 0034756363 scopus 로고    scopus 로고
    • Plasmids carrying cloned fragments of RF DNA from the filamentous phage (phi)Lf can be integrated into the host chromosome via site-specific integration and homologous recombination
    • Lin N.T., et al. Plasmids carrying cloned fragments of RF DNA from the filamentous phage (phi)Lf can be integrated into the host chromosome via site-specific integration and homologous recombination. Mol. Genet. Genomics 2001, 266:425-435.
    • (2001) Mol. Genet. Genomics , vol.266 , pp. 425-435
    • Lin, N.T.1
  • 47
    • 0034644159 scopus 로고    scopus 로고
    • The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis
    • Simpson A.J., et al. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. Nature 2000, 406:151-159.
    • (2000) Nature , vol.406 , pp. 151-159
    • Simpson, A.J.1
  • 48
    • 78650868871 scopus 로고    scopus 로고
    • XerCD-mediated site-specific recombination leads to loss of the 57kb gonococcal genetic island
    • Dominguez N.M., et al. XerCD-mediated site-specific recombination leads to loss of the 57kb gonococcal genetic island. J. Bacteriol. 2010, 193:377-388.
    • (2010) J. Bacteriol. , vol.193 , pp. 377-388
    • Dominguez, N.M.1
  • 49
    • 0034943923 scopus 로고    scopus 로고
    • A variable genetic island specific for Neisseria gonorrhoeae is involved in providing DNA for natural transformation and is found more often in disseminated infection isolates
    • Dillard J.P., Seifert H.S. A variable genetic island specific for Neisseria gonorrhoeae is involved in providing DNA for natural transformation and is found more often in disseminated infection isolates. Mol. Microbiol. 2001, 41:263-277.
    • (2001) Mol. Microbiol. , vol.41 , pp. 263-277
    • Dillard, J.P.1    Seifert, H.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.