Site-specific recombination systems in filamentous phages

Molecular Genetics and Genomics

Volumn 287, Issue 7, 2012, Pages 525-530

  Askora, Ahmed ^a   Abdel Haliem, M E F ^a   Yamada, Takashi ^b  

^a Zagazig University   (Egypt)

^b HIROSHIMA UNIVERSITY   (Japan)

Author keywords

Filamentous phages; Recombinase; Site specific recombination; XerC XerD

Indexed keywords

DOUBLE STRANDED DNA; RECOMBINASE;

BACTERIAL GENOME; BACTERIOPHAGE; CHROMOSOME; DNA REPLICATION; DNA SEQUENCE; FILAMENTOUS PHAGE; GENETIC RECOMBINATION; NEISSERIA; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; RALSTONIA SOLANACEARUM; REVIEW; SEQUENCE HOMOLOGY; SITE SPECIFIC RECOMBINATION; VIBRIO CHOLERAE;

ATTACHMENT SITES, MICROBIOLOGICAL; BACTERIAL PROTEINS; GENOME, BACTERIAL; GENOME, VIRAL; INOVIRUS; MODELS, GENETIC; RECOMBINASES; RECOMBINATION, GENETIC; VIBRIO CHOLERAE; VIRUS INTEGRATION;

FILAMENTOUS BACTERIOPHAGE; VIBRIO CHOLERAE; VIBRIO PHAGE CTX;

EID: 84864810701     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-012-0700-1     Document Type: Review

References (45)

1. Addy HS, Askora A, Kawasaki T, Fujie M, Yamada T (2012) Loss of virulence of the phytopathogen Ralstonia solanacearum through infection by φRSM filamentous phages. Phytopathology 105 (5). doi: 1094/PHYTO-11-11-0319-R
2. Armstrong J, Perham RN, Walker JE (1981) Domain structure of the bacteriophage fd adsorption protein. FEBS Lett 135:167-172
3. Askora A, Kawasaki T, Usami S, Fujie M, Yamada T (2009) Host recognition and integration of filamentous phage φRSM in the phytopathogen, Ralstonia solanacearum. Virology 384:69-76
4. Askora A, Kawasaki T, Fujie M, Yamada T (2011) Resolvase-like serine recombinase mediates integration/excision in the bacteriophage φRSM. J Biosci Bioeng 111:109-116
5. Barre FX, Sherratt DJS (2002) Xer site-specific recombination: promoting chromosome segregation. In: Craig NL, Craigie R, Gellert M, Lambowitz A (eds) Mobile DNA II, vol 1. American Society of Microbiology, Washington, DC, pp 149-161
6. Bibb LA, Hancox MI, Hatfull GF (2005) Integration and excision by the large serine recombinase φRv1 integrase. Mol Microbiol 55:1896-1910
7. Bille E, Zahar JR, Perrin A, Morelle S, Kriz P, Jolley KA, Maiden MCJ, Dervin C, Nassif X, Tinsley CR (2005) A chromosomally integrated bacteriophage in invasive meningococci. J Exp Med 201:1905-1913
8. Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A, Ellenberger T (2005) A structural basis for allosteric control of DNA recombination by lambda integrase. Nature 435:1059-1066
9. Blakely G, May G, McCulloch R, Arciszewska LK, Burke M, Lovett ST, Sherratt DJ (1993) Two related recombinases are required for site-specific recombination at dif and cer in E. coli K12. Cell 75:351-361
10. Campbell A (1962) Episomes. Adv Genet 11:101-145
11. Campos J, Martinez E, Suzarte E, Rodriguez BL, Marrero K, Silva Y, Ledon T, del Sol R, Fando R (2003) VGJφ, a novel filamentous phage of Vibrio cholerae, integrates into the same chromosomal site as CTXφ. J Bacteriol 185:5685-5696
12. Campos J, Martinez E, Izquierdo Y, Fando R (2010) VEJφ, a novel filamentous phage of Vibrio cholerae able to transduce the cholera toxin genes. Microbiology 156:108-115
13. Colloms SD, Sykora P, Szatmari G, Sherratt DJ (1990) Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases. J Bacteriol 172:6973-6980
14. Das B, Bischerour J, Val ME, Barre FX (2010) Molecular keys of the tropism of integration of the cholera toxin phage. Proc Natl Acad Sci USA 107:4377-4382
15. de Mello Varani A, Souza RC, Nakaya HI, de Lima WC, de Almeid P, Watabnabe-Kitajima E, Chen J, Civerelo E, Vasconceliss ATR, Van Sluys MA (2008) Origins of the Xylella fastidiosa prophagelike regions and their impact in genome differentiation. PLoS ONE 3(12):e4059
16. Deng LW, Malik P, Perham PN (1999) Interaction of the globular domains of pIII protein of filamentous bacteriophage fd with the F-pilus of Escherichia coli. Virology 253:271-277
17. Gabriel K, Schmid H, Schmidt U, Rausch H (1995) The actinophage RP3 DNA integrates site-specifically into the putative tRNA (Arg) (AGG) gene of Streptomyces rimosus. Nucleic Acid Res 23:58-63
18. Grindley NDF, Whiteson KL, Rice PA (2006) Mechanisms of sitespecific recombination. Annu Rev Biochem 75:567-605
19. Hatfull GF, Grindley NDF (1988) Resolvases and DNA invertases: a family of enzymes active in site-specific recombination. In: Kucherlapati R, Smith S (eds) Genetic recombination. ASM Press, Washington, DC, pp 357-396
20. Hill DF, Short J, Perharm NR, Petersen GB (1991) DNA sequence of the filamentous bacteriophage Pf1. J Mol Biol 218:349-364
21. Huber KE, Waldor MK (2002) Filamentous phage integration requires the host recombinases XerC and XerD. Nature 417:656-659
22. Jacobson A (1972) Role of F pili in the penetration of bacteriophage fl. J Virol 10:835-843
23. Kawai M, Uchiyama I, Kobayashi I (2005) Genomic comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase. DNA Res 12:389-401
24. Kawasaki T, Nagata S, Fujiwara A, Satsuma H, Fujie M, Usami S, Yamada T (2007) Genomic characterization of the filamentous integrative bacteriophage φRSS1 and φRSM1, which infect Ralstonia solanacearum. J Bacteriol 189:5792-5802
25. Kitts P, Richet E, Nash HA (1984) Lambda integrative recombination: supercoiling, synapsis, and strand exchange. Cold Spring Harb Symp Quant Biol 49:735-744
26. Lesterlin C, Barre FX, Cornet F (2004) Genetic recombination and the cell cycle: what we have learned from chromosome dimers. Mol Microbiol 54:1151-1160
27. Marvin DA (1998) Filamentous phage structure, infection and assembly. Curr Opin Struc Biol 8:150-158
28. McLeod SM, Waldor MK (2004) Characterization of XerC-and XerD-dependent CTX phage integration in Vibrio cholerae. Mol Microbiol 54:935-947
29. Model P, Russel M (1988) Filamentous bacteriophages. In: Calendar R (ed) The bacteriophages, vol 2. Plenum Press, New York, pp 375-456
30. Mooij MJ, Drenkard E, Llamas MA, Vandenbroucke-Grauls CMJE, Savelkoul PHM, Ausubel FM, Bitter W (2007) Characterization of the integrated Wlamentous phage Pf5 and its involvement in small-colony formation. Microbiology 153:1790-1798
31. Mumm JP, Landy A, Gelles J (2006) Viewing single lambda site-speciWc recombination events from start to Wnish. EMBO J 25:4586-4595
32. Nash HA (1996) Site-speciWc recombination: integration, excision, resolution and inversion of deWned DNA segments. In: Neidhardt FC, Curtiss R III, Ingraham JL, Lin ECC, Low KB, Magasanik B, ReznikoV WS, Riley M, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella. ASM Press, Washington, DC, pp 2363-2376
33. Nunes-Düby SE, Kwon HJ, Tirumalai RS, Ellenberger T, Landy A (1998) Similarities and diVerences among 105 members of the Int family of site-speciWc recombinases. Nucleic Acids Res 26:391-406
34. Russel M, Model P (1989) Genetic analysis of the Wlamentous bacteriophage packaging signal and the proteins that interact with it. J Virol 63:3284-3295
35. Sadowski PD (1993) Site-speciWc genetic recombination: hops, Xips, and Xops. FASEB J 7:760-767
36. Segall AM, Craig NL (2005) New wrinkles and folds in site-speciWc recombination. Mol Cell 19:433-435
37. Sherratt DJ, Arciszewska LK, Blakely G, Colloms S, Grant K, Leslie N, McCulloch R (1995) Site-speciWc recombination and circular chromosome segregation. Phil Trans R Soc Lond (B) 347:37-42
38. Smith MC, Thorpe HM (2002) Diversity in the serine recombinases. Mol Microbiol 44:299-307
39. Stark WM, Boocock MR, Sherrat DJ (1992) Catalysis by site-speciWc recombinases. Trends Genet 8:432-439
40. Sun X, Mierke DF, Biswas T, Lee SY, Landy A, Radman-Livaja M (2006) Architecture of the 99 bp DNA-six-protein regulatory complex of the lambda att site. Mol Cell 24:569-580
41. Val ME, Bouvier M, Campos J, Sherratt D, Cornet F, Mazel D, Barre FX (2005) The single-stranded genome of phage CTX is the form used for integration into the genome of Vibrio cholerae. Mol Cell 19:559-565
42. Waldor MK, Mekalanos JJ (1996) Lysogenic conversion by a Wlamentous phage encoding cholera toxin. Science 272:1910-1914
43. Warren D, Lee SY, Landy A (2005) Mutations in the amino-terminal domain of lambda-integrase have diVerential eVects on integrative and excisive recombination. Mol Microbiol 55:1104-1112
44. Webb JS, Lau M, Kjelleberg S (2004) Bacteriophage and phenotypic variation in Pseudomonas aeruginosa bioWlm development. J Bacteriol 186:8066-8073
45. Yamada T (2012) Bacteriophages of Ralstonia solanacearum: their diversity and utilization as biocontrol agents in agriculture. In: Kurtboke I (ed) Bacteriophages. InTech Open Access Publisher, Croatia, pp 113-139