Neutralizing DNA aptamers against swine influenza H3N2 viruses

Journal of Clinical Microbiology

Volumn 51, Issue 1, 2013, Pages 46-54

  Wongphatcharachai, Manoosak ^a,b   Wang, Ping ^b   Enomoto, Shinichiro ^b   Webby, Richard J ^c   Gramer, Marie R ^b   Amonsin, Alongkorn ^a   Sreevatsan, Srinand ^b  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b UNIVERSITY OF MINNESOTA   (United States)

^c ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; DNA APTAMER; INFLUENZA VIRUS HEMAGGLUTININ; LIGAND; RECOMBINANT INFLUENZA VIRUS H3 HEMAGGLUTININ; UNCLASSIFIED DRUG; VIRUS DNA;

ARTICLE; COMBINATORIAL CHEMISTRY; CONTROLLED STUDY; DISSOCIATION CONSTANT; HUMAN; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H3N2; NONHUMAN; NUCLEOTIDE BINDING SITE; PHYLOGENY; PRIORITY JOURNAL; STRAIN DIFFERENCE; SWINE INFLUENZA VIRUS; TAXONOMIC RANK; VIRUS CLASSIFICATION; VIRUS HEMAGGLUTINATION; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS STRAIN; VIRUS TYPING;

ANIMALS; APTAMERS, NUCLEOTIDE; HEMAGGLUTINATION INHIBITION TESTS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H3N2 SUBTYPE; SELEX APTAMER TECHNIQUE; SWINE; VETERINARY MEDICINE; VIROLOGY;

INFLUENZA A VIRUS; SUIDAE;

EID: 84871677192     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02118-12     Document Type: Article

References (56)

1. Krossoy B, Hordvik I, Nilsen F, Nylund A, Endresen C. 1999. The putative polymerase sequence of infectious salmon anemia virus suggests a new genus within the Orthomyxoviridae. J. Virol. 73:2136-2142. (Pubitemid 29098118)
2. Amonsin A, Payungporn S, Theamboonlers A, Thanawongnuwech R, Suradhat S, Pariyothorn N, Tantilertcharoen R, Damrongwantanapokin S, Buranathai C, Chaisingh A, Songserm T, Poovorawan Y. 2006. Genetic characterization of H5N1 influenza A viruses isolated from zoo tigers in Thailand. Virology 344:480-491. (Pubitemid 43049634)
3. Amonsin A, Songserm T, Chutinimitkul S, Jam-On R, Sae-Heng N, Pariyothorn N, Payungporn S, Theamboonlers A, Poovorawan Y. 2007. Genetic analysis of influenza A virus (H5N1) derived from domestic cat and dog in Thailand. Arch. Virol. 152:1925-1933. (Pubitemid 47498132)
4. Lvov DK, Zdanov VM, Sazonov AA, Braude NA, Vladimirtceva EA, Agafonova LV, Skljanskaja EI, Kaverin NV, Reznik VI, Pysina TV, Oserovic AM, Berzin AA, Mjasnikova IA, Podcernjaeva RY, Klimenko SM, Andrejev VP, Yakhno MA. 1978. Comparison of influenza viruses isolated from man and from whales. Bull. World Health Organ. 56:923-930. (Pubitemid 9106151)
5. Taubenberger JK, Morens DM. 2010. Influenza: the once and future pandemic. Public. Health Rep. 125:16-26.
6. Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y. 1992. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:152-179.
7. Tong S, Li Y, Rivailler P, Conrardy C, Castillo DA, Chen LM, Recuenco S, Ellison JA, Davis CT, York IA, Turmelle AS, Moran D, Rogers S, Shi M, Tao Y, Weil MR, Tang K, Rowe LA, Sammons S, Xu X, Frace M, Lindblade KA, Cox NJ, Anderson LJ, Rupprecht CE, Donis RO. 2012. A distinct lineage of influenza A virus from bats. Proc. Natl. Acad. Sci. U. S. A. 109:4269-4274.
8. Shope RE. 1931. Swine influenza. III. Filtration experiments and etiology. J. Exp. Med. 54:373-385.
9. Ito T, Couceiro JN, Kelm S, Baum LG, Krauss S, Castrucci MR, Donatelli I, Kida H, Paulson JC, Webster RG, Kawaoka Y. 1998. Molecular basis for the generation in pigs of influenza A viruses with pandemic potential. J. Virol. 72:7367-7373. (Pubitemid 28377868)
10. Kida H, Ito T, Yasuda J, Shimizu Y, Itakura C, Shortridge KF, Kawaoka Y, Webster RG. 1994. Potential for transmission of avian influenza viruses to pigs. J. Gen. Virol. 75(Pt 9):2183-2188. (Pubitemid 24282230)
11. Ma W, Lager KM, Vincent AL, Janke BH, Gramer MR, Richt JA. 2009. The role of swine in the generation of novel influenza viruses. Zoonoses Public Health 56:326-337.
12. Brown IH. 2000. The epidemiology and evolution of influenza viruses in pigs. Vet. Microbiol. 74:29-46. (Pubitemid 30224642)
13. Webby RJ, Swenson SL, Krauss SL, Gerrish PJ, Goyal SM, Webster RG. 2000. Evolution of swine H3N2 influenza viruses in the United States. J. Virol. 74:8243-8251. (Pubitemid 30666672)
14. Zhou NN, Senne DA, Landgraf JS, Swenson SL, Erickson G, Rossow K, Liu L, Yoon KJ, Krauss S, Webster RG. 2000. Emergence of H3N2 reassortant influenza A viruses in North American pigs. Vet. Microbiol. 74:47-58. (Pubitemid 30224643)
15. Richt JA, Lager KM, Janke BH, Woods RD, Webster RG, Webby RJ. 2003. Pathogenic and antigenic properties of phylogenetically distinct reassortant H3N2 swine influenza viruses cocirculating in the United States. J. Clin. Microbiol. 41:3198-3205. (Pubitemid 36842322)
16. Gramer MR, Lee JH, Choi YK, Goyal SM, Joo HS. 2007. Serologic and genetic characterization of North American H3N2 swine influenza A viruses. Can. J. Vet. Res. 71:201-206. (Pubitemid 47162401)
17. Olsen CW, Karasin AI, Carman S, Li Y, Bastien N, Ojkic D, Alves D, Charbonneau G, Henning BM, Low DE, Burton L, Broukhanski G. 2006. Triple reassortant H3N2 influenza A viruses, Canada, 2005. Emerg. Infect. Dis. 12:1132-1135. (Pubitemid 44061286)
18. Vincent AL, Ma W, Lager KM, Janke BH, Richt JA. 2008. Swine influenza viruses a North American perspective. Adv. Virus Res. 72:127-154.
19. Liu Q, Ma J, Liu H, Qi W, Anderson J, Henry SC, Hesse RA, Richt JA, Ma W. 2011. Emergence of novel reassortant H3N2 swine influenza viruses with the 2009 pandemic H1N1 genes in the United States. Arch. Virol. 157:555-562.
20. CDC. 2011. Swine-origin influenza A (H3N2) virus infection in two children - Indiana and Pennsylvania, July-August 2011. MMWR Morb. Mortal. Wkly. Rep. 60:1213-1215.
21. World Health Organization. 2002. Laboratory procedures: WHO manual on animal influenza diagnosis and surveillance. 2002:15-66.
22. Jayasena SD. 1999. Aptamers: an emerging class of molecules that rival antibodies in diagnostics. Clin. Chem. 45:1628-1650. (Pubitemid 29419030)
23. Ellington AD, Szostak JW. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346:818-822.
24. Tuerk C, Gold L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249:505-510.
25. Cheng C, Dong J, Yao L, Chen A, Jia R, Huan L, Guo J, Shu Y, Zhang Z. 2008. Potent inhibition of human influenza H5N1 virus by oligonucleotides derived by SELEX. Biochem. Biophys. Res. Commun. 366:670-674.
26. Cui ZQ, Ren Q, Wei HP, Chen Z, Deng JY, Zhang ZP, Zhang XE. 2011. Quantum dot-aptamer nanoprobes for recognizing and labeling influenza A virus particles. Nanoscale 3:2454-2457.
27. Gopinath SC, Misono TS, Kawasaki K, Mizuno T, Imai M, Odagiri T, Kumar PK. 2006. An RNA aptamer that distinguishes between closely related human influenza viruses and inhibits haemagglutinin-mediated membrane fusion. J. Gen. Virol. 87:479-487.
28. Jeon SH, Kayhan B, Ben-Yedidia T, Arnon R. 2004. A DNA aptamer prevents influenza infection by blocking the receptor binding region of the viral hemagglutinin. J. Biol. Chem. 279:48410-48419. (Pubitemid 39540998)
29. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software, version 4.0. Mol. Biol. Evol. 24:1596-1599. (Pubitemid 47236692)
30. Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415. (Pubitemid 37442169)
31. Wang P, Hatcher KL, Bartz JC, Chen SG, Skinner P, Richt J, Liu H, Sreevatsan S. 2011. Selection and characterization of DNA aptamers against PrP(Sc). Exp. Biol. Med. (Maywood) 236:466-476.
32. Zianni M, Tessanne K, Merighi M, Laguna R, Tabita FR. 2006. Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument. J. Biomol. Tech. 17:103-113.
33. Ramakrishnan MA, Wang P, Abin M, Yang M, Goyal SM, Gramer MR, Redig P, Fuhrman MW, Sreevatsan S. 2010. Triple reassortant swine influenza A (H3N2) virus in waterfowl. Emerg. Infect. Dis. 16:728-730.
34. Hirst GK. 1941. The agglutination of red cells by allantoic fluid of chick embryos infected with influenza virus. Science 94:22-23.
35. Weis W, Brown JH, Cusack S, Paulson JC, Skehel JJ, Wiley DC. 1988. Structure of the influenza virus haemagglutinin complexed with its receptor, sialic acid. Nature 333:426-431.
36. Lamont EA, He L, Warriner K, Labuza TP, Sreevatsan S. 2011. A single DNA aptamer functions as a biosensor for ricin. Analyst 136:3884-3895.
37. Luzi E, Minunni M, Tombelli S, Mascini M. 2003. New trends in affinity sensing: aptamers for ligand binding. Trends Anal. Chem. 22:810-818. (Pubitemid 37494914)
38. Tuerk C. 1997. Using the SELEX combinatorial chemistry process to find high-affinity nucleic acid ligands to target molecules. Methods Mol. Biol. 67:219-230.
39. Brody EN, Gold L. 2000. Aptamers as therapeutic and diagnostic agents. J. Biotechnol. 74:5-13.
40. Bunka DH, Stockley PG. 2006. Aptamers come of age at last. Nat. Rev. Microbiol. 4:588-596.
41. Javier DJ, Nitin N, Levy M, Ellington A, Richards-Kortum R. 2008. Aptamer-targeted gold nanoparticles as molecular-specific contrast agents for reflectance imaging. Bioconjug. Chem. 19:1309-1312. (Pubitemid 351874954)
42. Sassolas A, Blum LJ, Leca-Bouvier BD. 2011. Optical detection systems using immobilized aptamers. Biosens. Bioelectron 26:3725-3736.
43. Stojanovic MN, de Prada P, Landry DW. 2001. Aptamer-based folding fluorescent sensor for cocaine. J. Am. Chem. Soc. 123:4928-4931. (Pubitemid 32905648)
44. Syed MA, Pervaiz S. 2010. Advances in aptamers. Oligonucleotides 20: 215-224.
45. Yan X, Cao Z, Lau C, Lu J. 2011. DNA aptamer folding on magnetic beads for sequential detection of adenosine and cocaine by substrate-resolved chemiluminescence technology. Analyst 135:2400-2407.
46. Gold L, Polisky B, Uhlenbeck O, Yarus M. 1995. Diversity of oligonucleotide functions. Annu. Rev. Biochem. 64:763-797.
47. Breaker RR. 1997. DNA aptamers and DNA enzymes. Curr. Opin. Chem. Biol. 1:26-31. (Pubitemid 127435142)
48. Ito T, Suzuki Y, Mitnaul L, Vines A, Kida H, Kawaoka Y. 1997. Receptor specificity of influenza A viruses correlates with the agglutination of erythrocytes from different animal species. Virology 227:493-499. (Pubitemid 27241043)
49. Kayali G, Setterquist SF, Capuano AW, Myers KP, Gill JS, Gray GC. 2008. Testing human sera for antibodies against avian influenza viruses: horse RBC hemagglutination inhibition versus microneutralization assays. J. Clin. Virol. 43:73-78.
50. Louisirirotchanakul S, Lerdsamran H, Wiriyarat W, Sangsiriwut K, Chaichoune K, Pooruk P, Songserm T, Kitphati R, Sawanpanyalert P, Komoltri C, Auewarakul P, Puthavathana P. 2007. Erythrocyte binding preference of avian influenza H5N1 viruses. J. Clin. Microbiol. 45:2284-2286. (Pubitemid 47203809)
51. Lauring AS, Andino R. 2010. Quasispecies theory and the behavior of RNA viruses. PLoS Pathog. 6 : e1001005. doi:10.1371/journal.ppat.1001005.
52. Ramakrishnan MA, Tu ZJ, Singh S, Chockalingam AK, Gramer MR, Wang P, Goyal SM, Yang M, Halvorson DA, Sreevatsan S. 2009. The feasibility of using high-resolution genome sequencing of influenza A viruses to detect mixed infections and quasispecies. PLoS One 4:e7105. doi: 10.1371/journal.pone. 0007105.
53. Bean WJ, Schell M, Katz J, Kawaoka Y, Naeve C, Gorman O, Webster RG. 1992. Evolution of the H3 influenza virus hemagglutinin from human and nonhuman hosts. J. Virol. 66:1129 -1138.
54. Zhang W, Jiang Q, Chen Y. 2007. Evolution and variation of the H3 gene of influenza A virus and interaction among hosts. Intervirology 50:287-295. (Pubitemid 47091846)
55. Park SY, Kim S, Yoon H, Kim KB, Kalme SS, Oh S, Song CS, Kim DE. 2011. Selection of an antiviral RNA aptamer against hemagglutinin of the subtype H5 avian influenza virus. Nucleic Acid Ther. 21:395-402.
56. Choi SK, Lee C, Lee KS, Choe SY, Mo IP, Seong RH, Hong S, Jeon SH. 2011. DNA aptamers against the receptor binding region of hemagglutinin prevent avian influenza viral infection. Mol. Cells 32:527-533.