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Volumn 12, Issue , 2012, Pages

Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing

Author keywords

Genetic map; Grape; Next generation sequencing (NGS); Restriction site associated DNA (RAD)

Indexed keywords

VITACEAE; VITIS VINIFERA;

EID: 84871572868     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-148     Document Type: Article
Times cited : (111)

References (34)
  • 1
    • 69549086345 scopus 로고    scopus 로고
    • Grape products and oral health
    • 10.3945/jn.109.107854, 2728698, 19640974
    • Wu CD. Grape products and oral health. J Nutr 2009, 139(9):1818S-1823S. 10.3945/jn.109.107854, 2728698, 19640974.
    • (2009) J Nutr , vol.139 , Issue.9
    • Wu, C.D.1
  • 2
    • 69549133483 scopus 로고    scopus 로고
    • Unraveling the relationship between grapes and health
    • 10.3945/jn.109.107458, 2728694, 19625701
    • Pezzuto JM, Venkatasubramanian V, Hamad M, Morris KR. Unraveling the relationship between grapes and health. J Nutr 2009, 139(9):1783S-1787S. 10.3945/jn.109.107458, 2728694, 19625701.
    • (2009) J Nutr , vol.139 , Issue.9
    • Pezzuto, J.M.1    Venkatasubramanian, V.2    Hamad, M.3    Morris, K.R.4
  • 3
    • 69549138125 scopus 로고    scopus 로고
    • Grapes and cardiovascular disease
    • 10.3945/jn.109.107474, 2728695, 19625699
    • Dohadwala MM, Vita JA. Grapes and cardiovascular disease. J Nutr 2009, 139(9):1788S-1793S. 10.3945/jn.109.107474, 2728695, 19625699.
    • (2009) J Nutr , vol.139 , Issue.9
    • Dohadwala, M.M.1    Vita, J.A.2
  • 4
    • 74949098826 scopus 로고    scopus 로고
    • Grapes, wines, resveratrol, and heart health
    • 10.1097/FJC.0b013e3181bfaff3, 19770673
    • Bertelli AA, Das DK. Grapes, wines, resveratrol, and heart health. J Cardiovasc Pharmacol 2009, 54(6):468-476. 10.1097/FJC.0b013e3181bfaff3, 19770673.
    • (2009) J Cardiovasc Pharmacol , vol.54 , Issue.6 , pp. 468-476
    • Bertelli, A.A.1    Das, D.K.2
  • 5
    • 0029347176 scopus 로고
    • A molecular marker based linkage map of Vitis
    • 10.1139/g95-100, 7672609
    • Lodhi MA, Daly MJ, Ye GN, Weeden NF, Reisch BI. A molecular marker based linkage map of Vitis. Genome 1995, 38(4):786-794. 10.1139/g95-100, 7672609.
    • (1995) Genome , vol.38 , Issue.4 , pp. 786-794
    • Lodhi, M.A.1    Daly, M.J.2    Ye, G.N.3    Weeden, N.F.4    Reisch, B.I.5
  • 7
    • 5344263741 scopus 로고    scopus 로고
    • Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics
    • 10.1007/s00122-004-1704-y, 15184982
    • Adam-Blondon AF, Roux C, Claux D, Butterlin G, Merdinoglu D, This P. Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics. Theor Appl Genet 2004, 109(5):1017-1027. 10.1007/s00122-004-1704-y, 15184982.
    • (2004) Theor Appl Genet , vol.109 , Issue.5 , pp. 1017-1027
    • Adam-Blondon, A.F.1    Roux, C.2    Claux, D.3    Butterlin, G.4    Merdinoglu, D.5    This, P.6
  • 8
    • 8744249431 scopus 로고    scopus 로고
    • A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica
    • 10.1007/s00122-004-1728-3, 15292989
    • Doucleff M, Jin Y, Gao F, Riaz S, Krivanek AF, Walker MA. A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica. Theor Appl Genet 2004, 109(6):1178-1187. 10.1007/s00122-004-1728-3, 15292989.
    • (2004) Theor Appl Genet , vol.109 , Issue.6 , pp. 1178-1187
    • Doucleff, M.1    Jin, Y.2    Gao, F.3    Riaz, S.4    Krivanek, A.F.5    Walker, M.A.6
  • 9
    • 1842736098 scopus 로고    scopus 로고
    • A microsatellite marker based framework linkage map of Vitis vinifera L
    • 10.1007/s00122-003-1488-5, 14605808
    • Riaz S, Dangl GS, Edwards KJ, Meredith CP. A microsatellite marker based framework linkage map of Vitis vinifera L. Theor Appl Genet 2004, 108(5):864-872. 10.1007/s00122-003-1488-5, 14605808.
    • (2004) Theor Appl Genet , vol.108 , Issue.5 , pp. 864-872
    • Riaz, S.1    Dangl, G.S.2    Edwards, K.J.3    Meredith, C.P.4
  • 11
    • 33745504030 scopus 로고    scopus 로고
    • Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome
    • 10.1007/s00122-006-0301-7, 16791700
    • Lamoureux D, Bernole A, Le Clainche I, Tual S, Thareau V, Paillard S, Legeai F, Dossat C, Wincker P, Oswald M, et al. Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome. Theor Appl Genet 2006, 113(2):344-356. 10.1007/s00122-006-0301-7, 16791700.
    • (2006) Theor Appl Genet , vol.113 , Issue.2 , pp. 344-356
    • Lamoureux, D.1    Bernole, A.2    Le Clainche, I.3    Tual, S.4    Thareau, V.5    Paillard, S.6    Legeai, F.7    Dossat, C.8    Wincker, P.9    Oswald, M.10
  • 12
    • 33746761652 scopus 로고    scopus 로고
    • Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) x Riparia Gloire (Vitis riparia)
    • 10.1007/s00122-006-0264-8, 16607514
    • Lowe KM, Walker MA. Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) x Riparia Gloire (Vitis riparia). Theor Appl Genet 2006, 112(8):1582-1592. 10.1007/s00122-006-0264-8, 16607514.
    • (2006) Theor Appl Genet , vol.112 , Issue.8 , pp. 1582-1592
    • Lowe, K.M.1    Walker, M.A.2
  • 13
    • 34247859027 scopus 로고    scopus 로고
    • Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates
    • 10.1007/s00122-007-0516-2, 17380315
    • Di Gaspero G, Cipriani G, Adam-Blondon AF, Testolin R. Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates. Theor Appl Genet 2007, 114(7):1249-1263. 10.1007/s00122-007-0516-2, 17380315.
    • (2007) Theor Appl Genet , vol.114 , Issue.7 , pp. 1249-1263
    • Di Gaspero, G.1    Cipriani, G.2    Adam-Blondon, A.F.3    Testolin, R.4
  • 14
    • 34548455424 scopus 로고    scopus 로고
    • A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs
    • 10.1534/genetics.106.067462, 1950661, 17603124
    • Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, et al. A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs. Genetics 2007, 176(4):2637-2650. 10.1534/genetics.106.067462, 1950661, 17603124.
    • (2007) Genetics , vol.176 , Issue.4 , pp. 2637-2650
    • Troggio, M.1    Malacarne, G.2    Coppola, G.3    Segala, C.4    Cartwright, D.A.5    Pindo, M.6    Stefanini, M.7    Mank, R.8    Moroldo, M.9    Morgante, M.10
  • 16
    • 70349659689 scopus 로고    scopus 로고
    • A framework map from grapevine V3125 (Vitis vinifera 'Schiava grossa' x 'Riesling') x rootstock cultivar 'Borner' (Vitis riparia x Vitis cinerea) to localize genetic determinants of phylloxera root resistance
    • 10.1007/s00122-009-1107-1, 19626311
    • Zhang J, Hausmann L, Eibach R, Welter LJ, Topfer R, Zyprian EM. A framework map from grapevine V3125 (Vitis vinifera 'Schiava grossa' x 'Riesling') x rootstock cultivar 'Borner' (Vitis riparia x Vitis cinerea) to localize genetic determinants of phylloxera root resistance. Theor Appl Genet 2009, 119(6):1039-1051. 10.1007/s00122-009-1107-1, 19626311.
    • (2009) Theor Appl Genet , vol.119 , Issue.6 , pp. 1039-1051
    • Zhang, J.1    Hausmann, L.2    Eibach, R.3    Welter, L.J.4    Topfer, R.5    Zyprian, E.M.6
  • 17
    • 0033861056 scopus 로고    scopus 로고
    • Comparison of microsatellites and amplified fragment length polymorphism markers for parentage analysis
    • 10.1046/j.1365-294x.2000.00961.x, 10964223
    • Gerber S, Mariette S, Streiff R, Bodenes C, Kremer A. Comparison of microsatellites and amplified fragment length polymorphism markers for parentage analysis. Mol Ecol 2000, 9(8):1037-1048. 10.1046/j.1365-294x.2000.00961.x, 10964223.
    • (2000) Mol Ecol , vol.9 , Issue.8 , pp. 1037-1048
    • Gerber, S.1    Mariette, S.2    Streiff, R.3    Bodenes, C.4    Kremer, A.5
  • 18
    • 18244370820 scopus 로고    scopus 로고
    • Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions
    • 10.1111/j.1365-294X.2005.02543.x, 15836642
    • Woodhead M, Russell J, Squirrell J, Hollingsworth PM, Mackenzie K, Gibby M, Powell W. Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Mol Ecol 2005, 14(6):1681-1695. 10.1111/j.1365-294X.2005.02543.x, 15836642.
    • (2005) Mol Ecol , vol.14 , Issue.6 , pp. 1681-1695
    • Woodhead, M.1    Russell, J.2    Squirrell, J.3    Hollingsworth, P.M.4    Mackenzie, K.5    Gibby, M.6    Powell, W.7
  • 19
    • 25144487822 scopus 로고    scopus 로고
    • A DNA microarray system for forensic SNP analysis
    • Divne AM, Allen M. A DNA microarray system for forensic SNP analysis. Forensic Sci Int 2005, 154(2-3):111-121.
    • (2005) Forensic Sci Int , vol.154 , Issue.2-3 , pp. 111-121
    • Divne, A.M.1    Allen, M.2
  • 20
    • 66349090454 scopus 로고    scopus 로고
    • High-resolution melting analysis (HRMA): more than just sequence variant screening
    • 10.1002/humu.21019, 19418555
    • Vossen RH, Aten E, Roos A, den Dunnen JT. High-resolution melting analysis (HRMA): more than just sequence variant screening. Hum Mutat 2009, 30(6):860-866. 10.1002/humu.21019, 19418555.
    • (2009) Hum Mutat , vol.30 , Issue.6 , pp. 860-866
    • Vossen, R.H.1    Aten, E.2    Roos, A.3    den Dunnen, J.T.4
  • 21
    • 55649113792 scopus 로고    scopus 로고
    • A functional genomics resource for Brassica napus: development of an EMS mutagenized population and discovery of FAE1 point mutations by TILLING
    • 10.1111/j.1469-8137.2008.02619.x, 18811617
    • Wang N, Wang Y, Tian F, King GJ, Zhang C, Long Y, Shi L, Meng J. A functional genomics resource for Brassica napus: development of an EMS mutagenized population and discovery of FAE1 point mutations by TILLING. New Phytol 2008, 180(4):751-765. 10.1111/j.1469-8137.2008.02619.x, 18811617.
    • (2008) New Phytol , vol.180 , Issue.4 , pp. 751-765
    • Wang, N.1    Wang, Y.2    Tian, F.3    King, G.J.4    Zhang, C.5    Long, Y.6    Shi, L.7    Meng, J.8
  • 22
    • 79959895652 scopus 로고    scopus 로고
    • Assessment of FAE1 polymorphisms in three Brassica species using EcoTILLING and their association with differences in seed erucic acid contents
    • 10.1186/1471-2229-10-137, 3017795, 20594317
    • Wang N, Shi L, Tian F, Ning H, Wu X, Long Y, Meng J. Assessment of FAE1 polymorphisms in three Brassica species using EcoTILLING and their association with differences in seed erucic acid contents. BMC Plant Biol 2010, 10:137. 10.1186/1471-2229-10-137, 3017795, 20594317.
    • (2010) BMC Plant Biol , vol.10 , pp. 137
    • Wang, N.1    Shi, L.2    Tian, F.3    Ning, H.4    Wu, X.5    Long, Y.6    Meng, J.7
  • 24
    • 79959297013 scopus 로고    scopus 로고
    • Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne
    • 10.1007/s00122-011-1546-3, 21344184
    • Pfender WF, Saha MC, Johnson EA, Slabaugh MB. Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor Appl Genet 2011, 122(8):1467-1480. 10.1007/s00122-011-1546-3, 21344184.
    • (2011) Theor Appl Genet , vol.122 , Issue.8 , pp. 1467-1480
    • Pfender, W.F.1    Saha, M.C.2    Johnson, E.A.3    Slabaugh, M.B.4
  • 25
    • 78650792488 scopus 로고    scopus 로고
    • Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
    • 10.1186/1471-2164-12-4, 3023751, 21205322
    • Chutimanitsakun Y, Nipper RW, Cuesta-Marcos A, Cistue L, Corey A, Filichkina T, Johnson EA, Hayes PM. Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics 2011, 12:4. 10.1186/1471-2164-12-4, 3023751, 21205322.
    • (2011) BMC Genomics , vol.12 , pp. 4
    • Chutimanitsakun, Y.1    Nipper, R.W.2    Cuesta-Marcos, A.3    Cistue, L.4    Corey, A.5    Filichkina, T.6    Johnson, E.A.7    Hayes, P.M.8
  • 26
    • 84855224530 scopus 로고    scopus 로고
    • RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
    • 10.1186/1471-2164-13-3, 3269995, 22214349
    • Scaglione D, Acquadro A, Portis E, Tirone M, Knapp SJ, Lanteri S. RAD tag sequencing as a source of SNP markers in Cynara cardunculus L. BMC Genomics 2012, 13:3. 10.1186/1471-2164-13-3, 3269995, 22214349.
    • (2012) BMC Genomics , vol.13 , pp. 3
    • Scaglione, D.1    Acquadro, A.2    Portis, E.3    Tirone, M.4    Knapp, S.J.5    Lanteri, S.6
  • 27
    • 79958083178 scopus 로고    scopus 로고
    • Identification of SNP and SSR markers in eggplant using RAD tag sequencing
    • 10.1186/1471-2164-12-304, 3128069, 21663628
    • Barchi L, Lanteri S, Portis E, Acquadro A, Vale G, Toppino L, Rotino GL. Identification of SNP and SSR markers in eggplant using RAD tag sequencing. BMC Genomics 2011, 12:304. 10.1186/1471-2164-12-304, 3128069, 21663628.
    • (2011) BMC Genomics , vol.12 , pp. 304
    • Barchi, L.1    Lanteri, S.2    Portis, E.3    Acquadro, A.4    Vale, G.5    Toppino, L.6    Rotino, G.L.7
  • 28
    • 66449120272 scopus 로고    scopus 로고
    • High-throughput genotyping by whole-genome resequencing
    • 10.1101/gr.089516.108, 2694477, 19420380
    • Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, et al. High-throughput genotyping by whole-genome resequencing. Genome Res 2009, 19(6):1068-1076. 10.1101/gr.089516.108, 2694477, 19420380.
    • (2009) Genome Res , vol.19 , Issue.6 , pp. 1068-1076
    • Huang, X.1    Feng, Q.2    Qian, Q.3    Zhao, Q.4    Wang, L.5    Wang, A.6    Guan, J.7    Fan, D.8    Weng, Q.9    Huang, T.10
  • 29
    • 0028136089 scopus 로고
    • Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers
    • 1206059, 7982566
    • Grattapaglia D, Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 1994, 137(4):1121-1137. 1206059, 7982566.
    • (1994) Genetics , vol.137 , Issue.4 , pp. 1121-1137
    • Grattapaglia, D.1    Sederoff, R.2
  • 31
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • 10.1038/nature06148, 17721507
    • Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449(7161):463-467. 10.1038/nature06148, 17721507.
    • (2007) Nature , vol.449 , Issue.7161 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5    Casagrande, A.6    Choisne, N.7    Aubourg, S.8    Vitulo, N.9    Jubin, C.10
  • 32
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • 10.1016/j.tig.2007.12.007, 18262675
    • Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24(3):133-141. 10.1016/j.tig.2007.12.007, 18262675.
    • (2008) Trends Genet , vol.24 , Issue.3 , pp. 133-141
    • Mardis, E.R.1
  • 33
    • 49749103942 scopus 로고    scopus 로고
    • Recent duplications dominate NBS-encoding gene expansion in two woody species
    • 10.1007/s00438-008-0355-0, 18563445
    • Yang S, Zhang X, Yue JX, Tian D, Chen JQ. Recent duplications dominate NBS-encoding gene expansion in two woody species. Mol Genet Genomics 2008, 280(3):187-198. 10.1007/s00438-008-0355-0, 18563445.
    • (2008) Mol Genet Genomics , vol.280 , Issue.3 , pp. 187-198
    • Yang, S.1    Zhang, X.2    Yue, J.X.3    Tian, D.4    Chen, J.Q.5
  • 34
    • 80054054056 scopus 로고    scopus 로고
    • De novo genetic variation associated with retrotransposon activation, genomic rearrangements and trait variation in a recombinant inbred line population of Brassica napus derived from interspecific hybridization with Brassica rapa
    • 10.1111/j.1365-313X.2011.04679.x, 21689170
    • Zou J, Fu D, Gong H, Qian W, Xia W, Pires JC, Li R, Long Y, Mason AS, Yang TJ, et al. De novo genetic variation associated with retrotransposon activation, genomic rearrangements and trait variation in a recombinant inbred line population of Brassica napus derived from interspecific hybridization with Brassica rapa. Plant J 2011, 68(2):212-224. 10.1111/j.1365-313X.2011.04679.x, 21689170.
    • (2011) Plant J , vol.68 , Issue.2 , pp. 212-224
    • Zou, J.1    Fu, D.2    Gong, H.3    Qian, W.4    Xia, W.5    Pires, J.C.6    Li, R.7    Long, Y.8    Mason, A.S.9    Yang, T.J.10


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