-
1
-
-
0025370815
-
Dominant forces in protein folding
-
DOI 10.1021/bi00483a001
-
Dill, K. A. Dominant Forces in Protein Folding Biochemistry 1990, 29, 7133-7155 (Pubitemid 20230041)
-
(1990)
Biochemistry
, vol.29
, Issue.31
, pp. 7133-7155
-
-
Dill, K.A.1
-
2
-
-
38849196324
-
Water as an Active Constituent in Cell Biology
-
Ball, P. Water as an Active Constituent in Cell Biology Chem. Rev. 2008, 108, 74
-
(2008)
Chem. Rev.
, vol.108
, pp. 74
-
-
Ball, P.1
-
4
-
-
81155131795
-
Physical Modeling of Aqueous Solvation
-
Fennell, C. J.; Dill, K. A. Physical Modeling of Aqueous Solvation J. Stat. Phys. 2011, 145, 209-226
-
(2011)
J. Stat. Phys.
, vol.145
, pp. 209-226
-
-
Fennell, C.J.1
Dill, K.A.2
-
5
-
-
81155149880
-
Length-Scale Dependence of Hydration Free Energy: Effect of Solute Charge
-
Wang, J.; Bratko, D.; Luzar, A. Length-Scale Dependence of Hydration Free Energy: Effect of Solute Charge J. Stat. Phys. 2011, 145, 253-264
-
(2011)
J. Stat. Phys.
, vol.145
, pp. 253-264
-
-
Wang, J.1
Bratko, D.2
Luzar, A.3
-
6
-
-
0000539134
-
Molecular Theories and Simulation of Ions and Polar Molecules in Water
-
Hummer, G.; Pratt, L. R.; Garcia, A. E. Molecular Theories and Simulation of Ions and Polar Molecules in Water J. Phys. Chem. A 1998, 102, 7885
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 7885
-
-
Hummer, G.1
Pratt, L.R.2
Garcia, A.E.3
-
7
-
-
17444417470
-
Solvation Thermodynamics: Theory and Applications
-
Ben-Amotz, D.; Raineri, F. O.; Stell, G. Solvation Thermodynamics: Theory and Applications J. Phys. Chem. B 2005, 109, 6866
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 6866
-
-
Ben-Amotz, D.1
Raineri, F.O.2
Stell, G.3
-
8
-
-
1842422919
-
Size Dependent Ion Hydration, Its Asymmetry, and Convergence to Macroscopic Behavior
-
Rajamani, S.; Ghosh, T.; Garde, S. Size Dependent Ion Hydration, Its Asymmetry, and Convergence to Macroscopic Behavior J. Chem. Phys. 2004, 120, 4457-4466
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 4457-4466
-
-
Rajamani, S.1
Ghosh, T.2
Garde, S.3
-
9
-
-
0035922573
-
Understanding the optical band shape: Coumarin-153 steady-state spectroscopy
-
DOI 10.1021/jp011074f
-
Matyushov, D. V.; Newton, M. D. Understanding the Optical Band Shape: Coumarin-153 Steady-State Spectroscopy J. Phys. Chem. A 2001, 105, 8516-8532 (Pubitemid 35378383)
-
(2001)
Journal of Physical Chemistry A
, vol.105
, Issue.37
, pp. 8516-8532
-
-
Matyushov, D.V.1
Newton, M.D.2
-
10
-
-
0031559501
-
From hydrophobic to hydrophilic behaviour: A simulation study of solvation entropy and free energy of simple solutes
-
Lynden-Bell, R. M.; Rasaiah, J. C. From Hydrophobic to Hydrophilic Behaviour: A Simulation Study of Solvation Entropy and Free Energy of Simple Solutes J. Chem. Phys. 1997, 107, 1981-1991 (Pubitemid 127568871)
-
(1997)
Journal of Chemical Physics
, vol.107
, Issue.6
, pp. 1981-1991
-
-
Lynden-Bell, R.M.1
Rasaiah, J.C.2
-
11
-
-
0034249487
-
Convergence of Molecular and Macroscopic Continuum Descriptions of Ion Hydration
-
Ashbaugh, H. S. Convergence of Molecular and Macroscopic Continuum Descriptions of Ion Hydration J. Phys. Chem. B 2000, 104, 7235
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 7235
-
-
Ashbaugh, H.S.1
-
14
-
-
0022777523
-
Charge Distribution in Proteins
-
Barlow, D. J.; Thornton, J. M. Charge Distribution in Proteins Biopolymers 1986, 25, 1717-1733
-
(1986)
Biopolymers
, vol.25
, pp. 1717-1733
-
-
Barlow, D.J.1
Thornton, J.M.2
-
15
-
-
0025789054
-
Side-chain clusters in protein structures and their role in protein folding
-
Heringa, J.; Argos, P. Side-Chain Clusters in Protein Structures and Their Role in Protein Folding J. Mol. Biol. 1991, 220, 151-171 (Pubitemid 121004550)
-
(1991)
Journal of Molecular Biology
, vol.220
, Issue.1
, pp. 151-171
-
-
Heringa, J.1
Argos, P.2
-
16
-
-
0036642824
-
Electric dipole moments of globular proteins: Measurement and calculation with NMR and X-ray databases
-
DOI 10.1016/S0022-3093(02)01255-3, PII S0022309302012553
-
Takashima, S. Electric Dipole Moment of Globular Proteins: Measurement and Calculation with NMR and X-ray Databases J. Non-Cryst. Solids 2002, 305, 303-310 (Pubitemid 34552135)
-
(2002)
Journal of Non-Crystalline Solids
, vol.305
, Issue.1-3
, pp. 303-310
-
-
Takashima, S.1
-
17
-
-
72949108781
-
How Hydrophobic Hydration Responds to Solute Size and Attractions: Theory and Simulations
-
Athawale, M. V.; Jamadagni, S. N.; Garde, S. How Hydrophobic Hydration Responds to Solute Size and Attractions: Theory and Simulations J. Chem. Phys. 2009, 131, 115102-9
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 115102-115109
-
-
Athawale, M.V.1
Jamadagni, S.N.2
Garde, S.3
-
19
-
-
0001601038
-
A Perturbation Theory and Simulations of the Dipole Solvation Thermodynamics: Dipolar Hard Spheres
-
Matyushov, D. V.; Ladanyi, B. M. A Perturbation Theory and Simulations of the Dipole Solvation Thermodynamics: Dipolar Hard Spheres J. Chem. Phys. 1999, 110, 994
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 994
-
-
Matyushov, D.V.1
Ladanyi, B.M.2
-
20
-
-
51649088169
-
Unraveling Water's Entropic Mysteries: A Unified View of Non-polar, Polar and Ionic Hydration
-
Ben-Amotz, D.; Underwood, R. Unraveling Water's Entropic Mysteries: A Unified View of Non-polar, Polar and Ionic Hydration Acc. Chem. Res. 2008, 41, 957-967
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 957-967
-
-
Ben-Amotz, D.1
Underwood, R.2
-
21
-
-
81155133823
-
Hydration Free Energies by Energetic Partitioning of the Potential Distribution Theorem
-
Beck, T. L. Hydration Free Energies by Energetic Partitioning of the Potential Distribution Theorem J. Stat. Phys. 2011, 145, 335-354
-
(2011)
J. Stat. Phys.
, vol.145
, pp. 335-354
-
-
Beck, T.L.1
-
22
-
-
36549101599
-
A Thermodynamic Analysis of Solvation
-
Yu, H.-A.; Karplus, M. A Thermodynamic Analysis of Solvation J. Chem. Phys. 1988, 89, 2366
-
(1988)
J. Chem. Phys.
, vol.89
, pp. 2366
-
-
Yu, H.-A.1
Karplus, M.2
-
23
-
-
46149084929
-
Role of Attractive Methane-Water Interactions in the Potential of Mean Force between Methane Molecules in Water
-
Asthagiri, D.; Merchant, S.; Pratt, L. R. Role of Attractive Methane-Water Interactions in the Potential of Mean Force Between Methane Molecules in Water J. Chem. Phys. 2008, 128, 244512-7
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 244512-244517
-
-
Asthagiri, D.1
Merchant, S.2
Pratt, L.R.3
-
24
-
-
80052941932
-
Non-Gaussian Statistics of Electrostatic Fluctuations of Hydration Shells
-
Friesen, A. D.; Matyushov, D. V. Non-Gaussian Statistics of Electrostatic Fluctuations of Hydration Shells J. Chem. Phys. 2011, 135, 104501
-
(2011)
J. Chem. Phys.
, vol.135
, pp. 104501
-
-
Friesen, A.D.1
Matyushov, D.V.2
-
25
-
-
80052288500
-
Remarkable Patterns of Surface Water Ordering Around Polarized Buckminsterfullerene
-
Chopra, G.; Levitt, M. Remarkable Patterns of Surface Water Ordering Around Polarized Buckminsterfullerene Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 14455-14460
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 14455-14460
-
-
Chopra, G.1
Levitt, M.2
-
26
-
-
0034317635
-
Supercooled confined water and the mode coupling crossover temperature
-
DOI 10.1103/PhysRevLett.85.4317
-
Gallo, P.; Rovere, M.; Spohr, E. Supercooled Confined Water and the Mode Coupling Crossover Temperature Phys. Rev. Lett. 2000, 85, 4317-4320 (Pubitemid 32067803)
-
(2000)
Physical Review Letters
, vol.85
, Issue.20
, pp. 4317-4320
-
-
Gallo, P.1
Rovere, M.2
Spohr, E.3
-
27
-
-
36549099780
-
The Structure of Liquid Water at an Extended Hydrophobic Surface
-
Lee, C. Y.; McCammon, J. A.; Rossky, P. J. The Structure of Liquid Water at an Extended Hydrophobic Surface J. Chem. Phys. 1984, 80, 4448-4455
-
(1984)
J. Chem. Phys.
, vol.80
, pp. 4448-4455
-
-
Lee, C.Y.1
McCammon, J.A.2
Rossky, P.J.3
-
28
-
-
77249111728
-
Water in the Half Shell: Structure of Water, Focusing on Angular Structure and Solvation
-
Sharp, K. A.; Vanderkooi, J. M. Water in the Half Shell: Structure of Water, Focusing on Angular Structure and Solvation Acc. Chem. Res. 2010, 43, 231
-
(2010)
Acc. Chem. Res.
, vol.43
, pp. 231
-
-
Sharp, K.A.1
Vanderkooi, J.M.2
-
29
-
-
40649084349
-
Hydrophobicity of protein surfaces: Separating geometry from chemistry
-
DOI 10.1073/pnas.0708088105
-
Giovambattista, N.; Lopez, C. F.; Rossky, P. J.; Debenedetti, P. G. Hydrophobicity of Protein Surfaces: Separating Geometry from Chemistry Proc. Natl. Acad. Sci. 2008, 105, 2274-2279 (Pubitemid 351520503)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.7
, pp. 2274-2279
-
-
Giovambattista, N.1
Lopez, C.F.2
Rossky, P.J.3
Debenedetti, P.G.4
-
30
-
-
2342527858
-
Dynamics of Water in Biological Recognition
-
Pal, S. K.; Zewail, A. H. Dynamics of Water in Biological Recognition Chem. Rev. 2004, 104, 2099-2123
-
(2004)
Chem. Rev.
, vol.104
, pp. 2099-2123
-
-
Pal, S.K.1
Zewail, A.H.2
-
31
-
-
33846380618
-
Nanosecond relaxation dynamics of protein GB1 identified by the time-dependent red shift in the fluorescence of tryptophan and 5-fluorotryptophan
-
DOI 10.1021/jp064528n
-
Toptygin, D.; Gronenborn, A. M.; Brand, L. Nanosecond Relaxation Dynamics of Protein GB1 Identified by the Time-Dependent Red Shift in the Fluorescence of Tryptophan and 5-Fluorotryptophan J. Phys. Chem. B 2006, 110, 26292-26302 (Pubitemid 46133351)
-
(2006)
Journal of Physical Chemistry B
, vol.110
, Issue.51
, pp. 26292-26302
-
-
Toptygin, D.1
Gronenborn, A.M.2
Brand, L.3
-
32
-
-
34547551083
-
Measurement of solvation responses at multiple sites in a globular protein
-
DOI 10.1021/jp0709104
-
Abbyad, P.; Shi, X.; Childs, W.; McAnaney, T. B.; Cohen, B. E.; Boxer, S. G. Measurement of Solvation Responses at Multiple Sites in a Globular Protein J. Phys. Chem. B 2007, 111, 8269-8276 (Pubitemid 47184403)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.28
, pp. 8269-8276
-
-
Abbyad, P.1
Shi, X.2
Childs, W.3
McAnaney, T.B.4
Cohen, B.E.5
Boxer, S.G.6
-
33
-
-
58149308674
-
Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of its Hydration Layer
-
Li, T.; Hassanali, A. A.; Singer, S. J. Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of its Hydration Layer J. Phys. Chem. B 2008, 112, 16121-16134
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 16121-16134
-
-
Li, T.1
Hassanali, A.A.2
Singer, S.J.3
-
34
-
-
80052521875
-
Nanosecond Stokes Shift Dynamics, Dynamical Transition, and Gigantic Reorganization Energy of Hydrated Heme Proteins
-
Matyushov, D. V. Nanosecond Stokes Shift Dynamics, Dynamical Transition, and Gigantic Reorganization Energy of Hydrated Heme Proteins J. Phys. Chem. B 2011, 115, 10715-10724
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 10715-10724
-
-
Matyushov, D.V.1
-
35
-
-
84865684662
-
Non-Gaussian Statistics and Nanosecond Dynamics of Electrostatic Fluctuations Affecting Optical transitions in a Green Fluorescent Protein
-
Martin, D. R.; Matyushov, D. V. Non-Gaussian Statistics and Nanosecond Dynamics of Electrostatic Fluctuations Affecting Optical transitions in a Green Fluorescent Protein J. Phys. Chem. B 2012, 116, 10294-10300
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 10294-10300
-
-
Martin, D.R.1
Matyushov, D.V.2
-
36
-
-
0000525863
-
Solvent Reorganization and Thermodynamic Enthalpy-Entropy Compensation
-
Grunwald, E.; Steel, C. Solvent Reorganization and Thermodynamic Enthalpy-Entropy Compensation J. Am. Chem. Soc. 1995, 117, 5687-5692
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5687-5692
-
-
Grunwald, E.1
Steel, C.2
-
37
-
-
0035107447
-
Entropy-enthalpy compensation: Fact or artifact?
-
DOI 10.1110/ps.37801
-
Sharp, K. Entropy-Enthalpy Compensation: Fact or Artifact? Protein Sci. 2001, 10, 661-667 (Pubitemid 32221155)
-
(2001)
Protein Science
, vol.10
, Issue.3
, pp. 661-667
-
-
Sharp, K.1
|