-
1
-
-
1542336956
-
The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins
-
Verkhusha VV, Lukyanov KA, (2004) The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Nature Biotechnology 22: 289-296.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 289-296
-
-
Verkhusha, V.V.1
Lukyanov, K.A.2
-
2
-
-
33645798851
-
The fluorescent toolbox for assessing protein location and function
-
Giepmans BN, Adams SR, Ellisman MH, Tsien RY, (2006) The fluorescent toolbox for assessing protein location and function. Science 312: 217-224.
-
(2006)
Science
, vol.312
, pp. 217-224
-
-
Giepmans, B.N.1
Adams, S.R.2
Ellisman, M.H.3
Tsien, R.Y.4
-
3
-
-
22744451164
-
Crystallographic structures of Discosoma red fluorescent protein with immature and mature chromophores: Linking peptide bond trans-cis isomerization and acylimine formation in chromophore maturation
-
Tubbs JL, Tainer JA, Getzoff ED, (2005) Crystallographic structures of Discosoma red fluorescent protein with immature and mature chromophores: Linking peptide bond trans-cis isomerization and acylimine formation in chromophore maturation. Biochemistry 44: 9833-9840.
-
(2005)
Biochemistry
, vol.44
, pp. 9833-9840
-
-
Tubbs, J.L.1
Tainer, J.A.2
Getzoff, E.D.3
-
4
-
-
33747479549
-
Novel chromophores and buried charges control color in mFruits
-
Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ, (2006) Novel chromophores and buried charges control color in mFruits. Biochemistry 45: 9639-9647.
-
(2006)
Biochemistry
, vol.45
, pp. 9639-9647
-
-
Shu, X.1
Shaner, N.C.2
Yarbrough, C.A.3
Tsien, R.Y.4
Remington, S.J.5
-
5
-
-
0033674629
-
The structural basis for red fluorescence in the tetrameric GFP homolog DsRed
-
Wall MA, Socolich M, Ranganathan R, (2000) The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nature Structural Biology 7: 1133-1138.
-
(2000)
Nature Structural Biology
, vol.7
, pp. 1133-1138
-
-
Wall, M.A.1
Socolich, M.2
Ranganathan, R.3
-
6
-
-
3042691006
-
Common pathway for the red chromophore formation in fluorescent proteins and chromoproteins
-
Verkhusha VV, Chudakov DM, Gurskaya NG, Lukyanov S, Lukyanov KA, (2004) Common pathway for the red chromophore formation in fluorescent proteins and chromoproteins. Chemistry & Biology 11: 845-854.
-
(2004)
Chemistry & Biology
, vol.11
, pp. 845-854
-
-
Verkhusha, V.V.1
Chudakov, D.M.2
Gurskaya, N.G.3
Lukyanov, S.4
Lukyanov, K.A.5
-
7
-
-
77953631696
-
Chromophore formation in DsRed occurs by a branched pathway
-
Strack RL, Strongin DE, Mets L, Glick BS, Keenan RJ, (2010) Chromophore formation in DsRed occurs by a branched pathway. Journal of the American Chemical Society 132: 8496-8505.
-
(2010)
Journal of the American Chemical Society
, vol.132
, pp. 8496-8505
-
-
Strack, R.L.1
Strongin, D.E.2
Mets, L.3
Glick, B.S.4
Keenan, R.J.5
-
8
-
-
20444453728
-
The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore
-
Wilmann PG, Petersen J, Pettikiriarachchi A, Buckle AM, Smith SC, et al. (2005) The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore. J Mol Biol 349: 223-237.
-
(2005)
J Mol Biol
, vol.349
, pp. 223-237
-
-
Wilmann, P.G.1
Petersen, J.2
Pettikiriarachchi, A.3
Buckle, A.M.4
Smith, S.C.5
-
9
-
-
77950951096
-
Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins
-
Subach OM, Malashkevich VN, Zencheck WD, Morozova KS, Piatkevich KD, et al. (2010) Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins. Chemistry & Biology 17: 333-341.
-
(2010)
Chemistry & Biology
, vol.17
, pp. 333-341
-
-
Subach, O.M.1
Malashkevich, V.N.2
Zencheck, W.D.3
Morozova, K.S.4
Piatkevich, K.D.5
-
10
-
-
84856729949
-
Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed
-
Bravaya KB, Subach OM, Korovina N, Verkhusha VV, Krylov AI, (2012) Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed. Journal of the American Chemical Society 134: 2807-2814.
-
(2012)
Journal of the American Chemical Society
, vol.134
, pp. 2807-2814
-
-
Bravaya, K.B.1
Subach, O.M.2
Korovina, N.3
Verkhusha, V.V.4
Krylov, A.I.5
-
11
-
-
52249104161
-
Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants
-
Pouwels LJ, Zhang L, Chan NH, Dorrestein PC, Wachter RM, (2008) Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants. Biochemistry 47: 10111-10122.
-
(2008)
Biochemistry
, vol.47
, pp. 10111-10122
-
-
Pouwels, L.J.1
Zhang, L.2
Chan, N.H.3
Dorrestein, P.C.4
Wachter, R.M.5
-
12
-
-
38049170544
-
Dynamic Stokes shift in green fluorescent protein variants
-
Abbyad P, Childs W, Shi X, Boxer SG, (2007) Dynamic Stokes shift in green fluorescent protein variants. Proceedings of the National Academy of Sciences, USA 104: 20189-20194.
-
(2007)
Proceedings of the National Academy of Sciences, USA
, vol.104
, pp. 20189-20194
-
-
Abbyad, P.1
Childs, W.2
Shi, X.3
Boxer, S.G.4
-
13
-
-
0034710920
-
Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral
-
Baird GS, Zacharias DA, Tsien RY, (2000) Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral. Proc Natl Acad Sci U S A 97: 11984-11989.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 11984-11989
-
-
Baird, G.S.1
Zacharias, D.A.2
Tsien, R.Y.3
-
14
-
-
36448940510
-
Structural rearrangements near the chromophore influence the maturation speed and brightness of DsRed variants
-
Strongin DE, Bevis B, Khuong N, Downing ME, Strack RL, et al. (2007) Structural rearrangements near the chromophore influence the maturation speed and brightness of DsRed variants. Protein Engineering Design and Selection 20: 525-534.
-
(2007)
Protein Engineering Design and Selection
, vol.20
, pp. 525-534
-
-
Strongin, D.E.1
Bevis, B.2
Khuong, N.3
Downing, M.E.4
Strack, R.L.5
-
15
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, et al. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat Biotechnol 22: 1567-1572.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.4
Palmer, A.E.5
-
16
-
-
0036138545
-
Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed)
-
Bevis BJ, Glick BS, (2002) Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed). Nature Biotechnology 20: 83-87.
-
(2002)
Nature Biotechnology
, vol.20
, pp. 83-87
-
-
Bevis, B.J.1
Glick, B.S.2
-
17
-
-
62149150302
-
Far-red fluorescent tags for protein imaging in living tissues
-
Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, et al. (2009) Far-red fluorescent tags for protein imaging in living tissues. Biochemical Journal 418: 567-574.
-
(2009)
Biochemical Journal
, vol.418
, pp. 567-574
-
-
Shcherbo, D.1
Murphy, C.S.2
Ermakova, G.V.3
Solovieva, E.A.4
Chepurnykh, T.V.5
-
18
-
-
78650543850
-
Generation of longer emision wavelength red fluorescent proteins using computationally designed residues
-
Chica RA, Moore MM, Allen BD, Mayo SL, (2010) Generation of longer emision wavelength red fluorescent proteins using computationally designed residues. Proceedings of the National Academy of Sciences, USA 107: 20257-20262.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 20257-20262
-
-
Chica, R.A.1
Moore, M.M.2
Allen, B.D.3
Mayo, S.L.4
-
19
-
-
0032532156
-
Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein
-
Wachter RM, Elsliger MA, Kallio K, Hanson GT, Remington SJ, (1998) Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein. Structure 6: 1267-1277.
-
(1998)
Structure
, vol.6
, pp. 1267-1277
-
-
Wachter, R.M.1
Elsliger, M.A.2
Kallio, K.3
Hanson, G.T.4
Remington, S.J.5
-
20
-
-
10044227172
-
Evolution of new nonantibody proteins via iterative somatic hypermutation
-
Wang L, Jackson WC, Steinbach PA, Tsien RY, (2004) Evolution of new nonantibody proteins via iterative somatic hypermutation. Proceedings of the National Academy of Sciences, USA 101: 16745-16749.
-
(2004)
Proceedings of the National Academy of Sciences, USA
, vol.101
, pp. 16745-16749
-
-
Wang, L.1
Jackson, W.C.2
Steinbach, P.A.3
Tsien, R.Y.4
-
21
-
-
59949104992
-
Unique interactions between the chromophore and glutamate 16 lead to far-red emission in a red fluorescent protein
-
Shu X, Wang L, Colip L, Kallio K, Remington SJ, (2009) Unique interactions between the chromophore and glutamate 16 lead to far-red emission in a red fluorescent protein. Protein Sci 18: 460-466.
-
(2009)
Protein Sci
, vol.18
, pp. 460-466
-
-
Shu, X.1
Wang, L.2
Colip, L.3
Kallio, K.4
Remington, S.J.5
-
22
-
-
0035808253
-
Mutants of Discosoma red fluorescent protein with a GFP-like chromophore
-
Wiehler J, von Hummel J, Steipe B, (2001) Mutants of Discosoma red fluorescent protein with a GFP-like chromophore. FEBS Letters 487: 384-389.
-
(2001)
FEBS Letters
, vol.487
, pp. 384-389
-
-
Wiehler, J.1
von Hummel, J.2
Steipe, B.3
-
23
-
-
0035895225
-
Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution
-
Yarbrough D, Wachter RM, Kallio K, Matz MV, Remington SJ, (2001) Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution. Proceedings of the National Academy of Sciences, USA 98: 462-467.
-
(2001)
Proceedings of the National Academy of Sciences, USA
, vol.98
, pp. 462-467
-
-
Yarbrough, D.1
Wachter, R.M.2
Kallio, K.3
Matz, M.V.4
Remington, S.J.5
-
24
-
-
77956152936
-
Mechanistic diversity of red fluorescence acquisition by GFP-like proteins
-
Wachter RM, Watkins JL, Kim H, (2010) Mechanistic diversity of red fluorescence acquisition by GFP-like proteins. Biochemistry 49: 7417-7427.
-
(2010)
Biochemistry
, vol.49
, pp. 7417-7427
-
-
Wachter, R.M.1
Watkins, J.L.2
Kim, H.3
-
25
-
-
62149150302
-
Far-red fluorescent tags for protein imaging in living tissues
-
Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, et al. (2009) Far-red fluorescent tags for protein imaging in living tissues. Biochemistry Journal 418: 567-574.
-
(2009)
Biochemistry Journal
, vol.418
, pp. 567-574
-
-
Shcherbo, D.1
Murphy, C.S.2
Ermakova, G.V.3
Solovieva, E.A.4
Chepurnykh, T.V.5
-
26
-
-
0035800773
-
Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications
-
Griesbeck O, Baird GS, Campbell RE, Zacharias DA, Tsien RY, (2001) Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications. Journal of Biological Chemistry 276: 29188-29194.
-
(2001)
Journal of Biological Chemistry
, vol.276
, pp. 29188-29194
-
-
Griesbeck, O.1
Baird, G.S.2
Campbell, R.E.3
Zacharias, D.A.4
Tsien, R.Y.5
-
27
-
-
22544460277
-
Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein
-
Sniegowski JA, Lappe JW, Patel HN, Huffman HA, Wachter R, (2005) Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein. Journal of Biological Chemistry 280: 26248-26255.
-
(2005)
Journal of Biological Chemistry
, vol.280
, pp. 26248-26255
-
-
Sniegowski, J.A.1
Lappe, J.W.2
Patel, H.N.3
Huffman, H.A.4
Wachter, R.5
-
28
-
-
11844250759
-
The crystal structure of the Y66L variant of green fluorescent protein supports a cyclization-oxidation-dehydration mechanism for chromophore maturation
-
Rosenow MA, Huffman HA, Phail ME, Wachter RM, (2004) The crystal structure of the Y66L variant of green fluorescent protein supports a cyclization-oxidation-dehydration mechanism for chromophore maturation. Biochemistry 43: 4464-4472.
-
(2004)
Biochemistry
, vol.43
, pp. 4464-4472
-
-
Rosenow, M.A.1
Huffman, H.A.2
Phail, M.E.3
Wachter, R.M.4
-
29
-
-
77955640606
-
Fluorescent proteins and their applications in imaging living cells and tissues
-
Chudakov DM, Matz MV, Lukyanov S, Lukyanov KA, (2010) Fluorescent proteins and their applications in imaging living cells and tissues. Physiological Reviews 90: 1103-1163.
-
(2010)
Physiological Reviews
, vol.90
, pp. 1103-1163
-
-
Chudakov, D.M.1
Matz, M.V.2
Lukyanov, S.3
Lukyanov, K.A.4
-
30
-
-
56149104588
-
A noncytotoxic DsRed variant for whole-cell labeling
-
Strack RL, Strongin DE, Bhattacharyya D, Tao W, Berman A, et al. (2008) A noncytotoxic DsRed variant for whole-cell labeling. Nature Methods 5: 955-957.
-
(2008)
Nature Methods
, vol.5
, pp. 955-957
-
-
Strack, R.L.1
Strongin, D.E.2
Bhattacharyya, D.3
Tao, W.4
Berman, A.5
-
31
-
-
0037040893
-
Analysis of DsRed Mutants. Space around the fluorophore accelerates fluorescence development
-
Terskikh AV, Fradkov AF, Zaraisky AG, Kajava AV, Angres B, (2002) Analysis of DsRed Mutants. Space around the fluorophore accelerates fluorescence development. Journal of Biological Chemistry 277: 7633-7636.
-
(2002)
Journal of Biological Chemistry
, vol.277
, pp. 7633-7636
-
-
Terskikh, A.V.1
Fradkov, A.F.2
Zaraisky, A.G.3
Kajava, A.V.4
Angres, B.5
-
32
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, et al. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnology 22: 1567-1572.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.4
Palmer, A.E.5
-
33
-
-
0034710921
-
The structure of the chromophore within DsRed, a red fluorescent protein from coral
-
Gross LA, Baird GS, Hoffman RC, Baldridge KK, Tsien RY, (2000) The structure of the chromophore within DsRed, a red fluorescent protein from coral. Proceedings of the National Academy of Sciences, USA 97: 11990-11995.
-
(2000)
Proceedings of the National Academy of Sciences, USA
, vol.97
, pp. 11990-11995
-
-
Gross, L.A.1
Baird, G.S.2
Hoffman, R.C.3
Baldridge, K.K.4
Tsien, R.Y.5
-
34
-
-
42349096096
-
The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore
-
Mishin AS, Subach FV, Yampolsky IV, King W, Lukyanov KA, et al. (2008) The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore. Biochemistry 47: 4666-4673.
-
(2008)
Biochemistry
, vol.47
, pp. 4666-4673
-
-
Mishin, A.S.1
Subach, F.V.2
Yampolsky, I.V.3
King, W.4
Lukyanov, K.A.5
-
35
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR, (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77: 51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
38
-
-
34447508216
-
Phaser crystallographic software
-
Mccoy A, Grosse-Kunstleve R, Adams P, Winn M, Storoni L, et al. (2007) Phaser crystallographic software. Journal of Applied Crystallography 40: 658-674.
-
(2007)
Journal of Applied Crystallography
, vol.40
, pp. 658-674
-
-
Mccoy, A.1
Grosse-Kunstleve, R.2
Adams, P.3
Winn, M.4
Storoni, L.5
-
40
-
-
16644364842
-
REFMAC5 dictionary: Organization of prior chemical knowledge and guidelines for its use
-
Vagin AA, Steiner RA, Lebedev AA, Potterton L, McNicholas S, et al. (2004) REFMAC5 dictionary: Organization of prior chemical knowledge and guidelines for its use. Acta Crystallographica Section D: Biological Crystallography 60: 2184-2195.
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, pp. 2184-2195
-
-
Vagin, A.A.1
Steiner, R.A.2
Lebedev, A.A.3
Potterton, L.4
McNicholas, S.5
-
44
-
-
33645158291
-
TLSMD web server for the generation of multi-group TLS models
-
Painter J, Merritt EA, (2006) TLSMD web server for the generation of multi-group TLS models. Journal of Applied Crystallography 39: 109-111.
-
(2006)
Journal of Applied Crystallography
, vol.39
, pp. 109-111
-
-
Painter, J.1
Merritt, E.A.2
|