메뉴 건너뛰기




Volumn 7, Issue 12, 2012, Pages

Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design

Author keywords

[No Author keywords available]

Indexed keywords

LYSINE; MUTANT PROTEIN; PEPTIDE; RED FLUORESCENT PROTEIN; YELLOW FLUORESCENT PROTEIN;

EID: 84871443515     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0052463     Document Type: Article
Times cited : (19)

References (44)
  • 1
    • 1542336956 scopus 로고    scopus 로고
    • The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins
    • Verkhusha VV, Lukyanov KA, (2004) The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Nature Biotechnology 22: 289-296.
    • (2004) Nature Biotechnology , vol.22 , pp. 289-296
    • Verkhusha, V.V.1    Lukyanov, K.A.2
  • 2
    • 33645798851 scopus 로고    scopus 로고
    • The fluorescent toolbox for assessing protein location and function
    • Giepmans BN, Adams SR, Ellisman MH, Tsien RY, (2006) The fluorescent toolbox for assessing protein location and function. Science 312: 217-224.
    • (2006) Science , vol.312 , pp. 217-224
    • Giepmans, B.N.1    Adams, S.R.2    Ellisman, M.H.3    Tsien, R.Y.4
  • 3
    • 22744451164 scopus 로고    scopus 로고
    • Crystallographic structures of Discosoma red fluorescent protein with immature and mature chromophores: Linking peptide bond trans-cis isomerization and acylimine formation in chromophore maturation
    • Tubbs JL, Tainer JA, Getzoff ED, (2005) Crystallographic structures of Discosoma red fluorescent protein with immature and mature chromophores: Linking peptide bond trans-cis isomerization and acylimine formation in chromophore maturation. Biochemistry 44: 9833-9840.
    • (2005) Biochemistry , vol.44 , pp. 9833-9840
    • Tubbs, J.L.1    Tainer, J.A.2    Getzoff, E.D.3
  • 5
    • 0033674629 scopus 로고    scopus 로고
    • The structural basis for red fluorescence in the tetrameric GFP homolog DsRed
    • Wall MA, Socolich M, Ranganathan R, (2000) The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nature Structural Biology 7: 1133-1138.
    • (2000) Nature Structural Biology , vol.7 , pp. 1133-1138
    • Wall, M.A.1    Socolich, M.2    Ranganathan, R.3
  • 8
    • 20444453728 scopus 로고    scopus 로고
    • The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore
    • Wilmann PG, Petersen J, Pettikiriarachchi A, Buckle AM, Smith SC, et al. (2005) The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore. J Mol Biol 349: 223-237.
    • (2005) J Mol Biol , vol.349 , pp. 223-237
    • Wilmann, P.G.1    Petersen, J.2    Pettikiriarachchi, A.3    Buckle, A.M.4    Smith, S.C.5
  • 9
    • 77950951096 scopus 로고    scopus 로고
    • Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins
    • Subach OM, Malashkevich VN, Zencheck WD, Morozova KS, Piatkevich KD, et al. (2010) Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins. Chemistry & Biology 17: 333-341.
    • (2010) Chemistry & Biology , vol.17 , pp. 333-341
    • Subach, O.M.1    Malashkevich, V.N.2    Zencheck, W.D.3    Morozova, K.S.4    Piatkevich, K.D.5
  • 10
    • 84856729949 scopus 로고    scopus 로고
    • Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed
    • Bravaya KB, Subach OM, Korovina N, Verkhusha VV, Krylov AI, (2012) Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed. Journal of the American Chemical Society 134: 2807-2814.
    • (2012) Journal of the American Chemical Society , vol.134 , pp. 2807-2814
    • Bravaya, K.B.1    Subach, O.M.2    Korovina, N.3    Verkhusha, V.V.4    Krylov, A.I.5
  • 11
    • 52249104161 scopus 로고    scopus 로고
    • Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants
    • Pouwels LJ, Zhang L, Chan NH, Dorrestein PC, Wachter RM, (2008) Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants. Biochemistry 47: 10111-10122.
    • (2008) Biochemistry , vol.47 , pp. 10111-10122
    • Pouwels, L.J.1    Zhang, L.2    Chan, N.H.3    Dorrestein, P.C.4    Wachter, R.M.5
  • 13
    • 0034710920 scopus 로고    scopus 로고
    • Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral
    • Baird GS, Zacharias DA, Tsien RY, (2000) Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral. Proc Natl Acad Sci U S A 97: 11984-11989.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 11984-11989
    • Baird, G.S.1    Zacharias, D.A.2    Tsien, R.Y.3
  • 14
  • 15
    • 11144267737 scopus 로고    scopus 로고
    • Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
    • Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, et al. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat Biotechnol 22: 1567-1572.
    • (2004) Nat Biotechnol , vol.22 , pp. 1567-1572
    • Shaner, N.C.1    Campbell, R.E.2    Steinbach, P.A.3    Giepmans, B.N.4    Palmer, A.E.5
  • 16
    • 0036138545 scopus 로고    scopus 로고
    • Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed)
    • Bevis BJ, Glick BS, (2002) Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed). Nature Biotechnology 20: 83-87.
    • (2002) Nature Biotechnology , vol.20 , pp. 83-87
    • Bevis, B.J.1    Glick, B.S.2
  • 19
    • 0032532156 scopus 로고    scopus 로고
    • Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein
    • Wachter RM, Elsliger MA, Kallio K, Hanson GT, Remington SJ, (1998) Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein. Structure 6: 1267-1277.
    • (1998) Structure , vol.6 , pp. 1267-1277
    • Wachter, R.M.1    Elsliger, M.A.2    Kallio, K.3    Hanson, G.T.4    Remington, S.J.5
  • 21
    • 59949104992 scopus 로고    scopus 로고
    • Unique interactions between the chromophore and glutamate 16 lead to far-red emission in a red fluorescent protein
    • Shu X, Wang L, Colip L, Kallio K, Remington SJ, (2009) Unique interactions between the chromophore and glutamate 16 lead to far-red emission in a red fluorescent protein. Protein Sci 18: 460-466.
    • (2009) Protein Sci , vol.18 , pp. 460-466
    • Shu, X.1    Wang, L.2    Colip, L.3    Kallio, K.4    Remington, S.J.5
  • 22
    • 0035808253 scopus 로고    scopus 로고
    • Mutants of Discosoma red fluorescent protein with a GFP-like chromophore
    • Wiehler J, von Hummel J, Steipe B, (2001) Mutants of Discosoma red fluorescent protein with a GFP-like chromophore. FEBS Letters 487: 384-389.
    • (2001) FEBS Letters , vol.487 , pp. 384-389
    • Wiehler, J.1    von Hummel, J.2    Steipe, B.3
  • 24
    • 77956152936 scopus 로고    scopus 로고
    • Mechanistic diversity of red fluorescence acquisition by GFP-like proteins
    • Wachter RM, Watkins JL, Kim H, (2010) Mechanistic diversity of red fluorescence acquisition by GFP-like proteins. Biochemistry 49: 7417-7427.
    • (2010) Biochemistry , vol.49 , pp. 7417-7427
    • Wachter, R.M.1    Watkins, J.L.2    Kim, H.3
  • 28
    • 11844250759 scopus 로고    scopus 로고
    • The crystal structure of the Y66L variant of green fluorescent protein supports a cyclization-oxidation-dehydration mechanism for chromophore maturation
    • Rosenow MA, Huffman HA, Phail ME, Wachter RM, (2004) The crystal structure of the Y66L variant of green fluorescent protein supports a cyclization-oxidation-dehydration mechanism for chromophore maturation. Biochemistry 43: 4464-4472.
    • (2004) Biochemistry , vol.43 , pp. 4464-4472
    • Rosenow, M.A.1    Huffman, H.A.2    Phail, M.E.3    Wachter, R.M.4
  • 29
    • 77955640606 scopus 로고    scopus 로고
    • Fluorescent proteins and their applications in imaging living cells and tissues
    • Chudakov DM, Matz MV, Lukyanov S, Lukyanov KA, (2010) Fluorescent proteins and their applications in imaging living cells and tissues. Physiological Reviews 90: 1103-1163.
    • (2010) Physiological Reviews , vol.90 , pp. 1103-1163
    • Chudakov, D.M.1    Matz, M.V.2    Lukyanov, S.3    Lukyanov, K.A.4
  • 32
    • 11144267737 scopus 로고    scopus 로고
    • Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
    • Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, et al. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnology 22: 1567-1572.
    • (2004) Nature Biotechnology , vol.22 , pp. 1567-1572
    • Shaner, N.C.1    Campbell, R.E.2    Steinbach, P.A.3    Giepmans, B.N.4    Palmer, A.E.5
  • 34
    • 42349096096 scopus 로고    scopus 로고
    • The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore
    • Mishin AS, Subach FV, Yampolsky IV, King W, Lukyanov KA, et al. (2008) The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore. Biochemistry 47: 4666-4673.
    • (2008) Biochemistry , vol.47 , pp. 4666-4673
    • Mishin, A.S.1    Subach, F.V.2    Yampolsky, I.V.3    King, W.4    Lukyanov, K.A.5
  • 35
    • 0024520745 scopus 로고
    • Site-directed mutagenesis by overlap extension using the polymerase chain reaction
    • Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR, (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77: 51-59.
    • (1989) Gene , vol.77 , pp. 51-59
    • Ho, S.N.1    Hunt, H.D.2    Horton, R.M.3    Pullen, J.K.4    Pease, L.R.5
  • 44
    • 33645158291 scopus 로고    scopus 로고
    • TLSMD web server for the generation of multi-group TLS models
    • Painter J, Merritt EA, (2006) TLSMD web server for the generation of multi-group TLS models. Journal of Applied Crystallography 39: 109-111.
    • (2006) Journal of Applied Crystallography , vol.39 , pp. 109-111
    • Painter, J.1    Merritt, E.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.