-
1
-
-
79952540456
-
Selected reaction monitoring applied to proteomics
-
Gallien, S., Duriez, E., Domon, B., Selected reaction monitoring applied to proteomics. J. Mass Spectrom. 2011, 46, 298-312.
-
(2011)
J. Mass Spectrom.
, vol.46
, pp. 298-312
-
-
Gallien, S.1
Duriez, E.2
Domon, B.3
-
2
-
-
84857129576
-
Global kinetic analysis of proteolysis via quantitative targeted proteomics
-
Agard, N. J., Mahrus, S., Trinidad, J. C., Lynn, A. et al., Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proc. Natl. Acad. Sci. USA 2012, 109, 1913-1918.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 1913-1918
-
-
Agard, N.J.1
Mahrus, S.2
Trinidad, J.C.3
Lynn, A.4
-
3
-
-
79551600149
-
Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics
-
Costenoble, R., Picotti, P., Reiter, L., Stallmach, R. et al., Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics. Mol. Syst. Biol. 2011, 7, 464.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 464
-
-
Costenoble, R.1
Picotti, P.2
Reiter, L.3
Stallmach, R.4
-
4
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B., Aebersold, R., Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 2009, 138, 795-806.
-
(2009)
Cell
, vol.138
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
5
-
-
84862832755
-
Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers
-
Chen, Y. T., Chen, H. W., Domanski, D., Smith, D. S. et al., Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers. J. Proteomics 2012, 75, 3529-3545.
-
(2012)
J. Proteomics
, vol.75
, pp. 3529-3545
-
-
Chen, Y.T.1
Chen, H.W.2
Domanski, D.3
Smith, D.S.4
-
6
-
-
71049187147
-
Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution
-
Keshishian, H., Addona, T., Burgess, M., Mani, D. R. et al., Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell Proteomics 2009, 8, 2339-2349.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 2339-2349
-
-
Keshishian, H.1
Addona, T.2
Burgess, M.3
Mani, D.R.4
-
7
-
-
71049137289
-
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma
-
Kuzyk, M. A., Smith, D., Yang, J., Cross, T. J. et al., Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol. Cell Proteomics 2009, 8, 1860-1877.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 1860-1877
-
-
Kuzyk, M.A.1
Smith, D.2
Yang, J.3
Cross, T.J.4
-
8
-
-
79952308635
-
Systematic quantification of peptides/proteins in urine using selected reaction monitoring
-
Selevsek, N., Matondo, M., Sanchez Carbayo, M., Aebersold, R., Domon, B., Systematic quantification of peptides/proteins in urine using selected reaction monitoring. Proteomics 2011, 11, 1135-1147.
-
(2011)
Proteomics
, vol.11
, pp. 1135-1147
-
-
Selevsek, N.1
Matondo, M.2
Sanchez Carbayo, M.3
Aebersold, R.4
Domon, B.5
-
9
-
-
84858980337
-
Towards clinical applications of selected reaction monitoring for plasma protein biomarker studies
-
Krisp, C., Randall, S. A., McKay, M. J., Molloy, M. P., Towards clinical applications of selected reaction monitoring for plasma protein biomarker studies. Proteomics Clin. Appl. 2012, 6, 42-59.
-
(2012)
Proteomics Clin. Appl.
, vol.6
, pp. 42-59
-
-
Krisp, C.1
Randall, S.A.2
McKay, M.J.3
Molloy, M.P.4
-
10
-
-
79955595074
-
mProphet: automated data processing and statistical validation for large-scale SRM experiments
-
Reiter, L., Rinner, O., Picotti, P., Huttenhain, R. et al., mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nat. Methods 2011, 8, 430-435.
-
(2011)
Nat. Methods
, vol.8
, pp. 430-435
-
-
Reiter, L.1
Rinner, O.2
Picotti, P.3
Huttenhain, R.4
-
11
-
-
84860866702
-
Hi-ghly multiplexed targeted proteomics using precise control of peptide retention time
-
Gallien, S., Peterman, S., Kiyonami, R., Souady, J. et al., Hi-ghly multiplexed targeted proteomics using precise control of peptide retention time. Proteomics 2012, 12, 1122-1133.
-
(2012)
Proteomics
, vol.12
, pp. 1122-1133
-
-
Gallien, S.1
Peterman, S.2
Kiyonami, R.3
Souady, J.4
-
12
-
-
84860868797
-
Sigpep: calculating unique peptide signature transition sets in a complete proteome background
-
Helsens, K., Mueller, M., Hulstaert, N., Martens, L., Sigpep: calculating unique peptide signature transition sets in a complete proteome background. Proteomics 2012, 12, 1142-1146.
-
(2012)
Proteomics
, vol.12
, pp. 1142-1146
-
-
Helsens, K.1
Mueller, M.2
Hulstaert, N.3
Martens, L.4
-
13
-
-
84863900597
-
A computational tool to detect and avoid redundancy in selected reaction monitoring
-
Rost, H., Malmstrom, L., Aebersold, R., A computational tool to detect and avoid redundancy in selected reaction monitoring. Mol. Cell Proteomics 2012, 11, 540-549.
-
(2012)
Mol. Cell Proteomics
, vol.11
, pp. 540-549
-
-
Rost, H.1
Malmstrom, L.2
Aebersold, R.3
-
14
-
-
71049143452
-
Unique ion signature mass spectrometry, a deterministic method to assign peptide identity
-
Sherman, J., McKay, M. J., Ashman, K., Molloy, M. P., Unique ion signature mass spectrometry, a deterministic method to assign peptide identity. Mol. Cell Proteomics 2009, 8, 2051-2062.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 2051-2062
-
-
Sherman, J.1
McKay, M.J.2
Ashman, K.3
Molloy, M.P.4
-
15
-
-
34848903890
-
The implications of proteolytic background for shotgun proteomics
-
Picotti, P., Aebersold, R., Domon, B., The implications of proteolytic background for shotgun proteomics. Mol. Cell Proteomics 2007, 6, 1589-1598.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 1589-1598
-
-
Picotti, P.1
Aebersold, R.2
Domon, B.3
-
16
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
Craig, R., Cortens, J. P., Beavis, R. C., Open source system for analyzing, validating, and storing protein identification data. J. Proteome. Res. 2004, 3, 1234-1242.
-
(2004)
J. Proteome. Res.
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
17
-
-
43049127826
-
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
-
Deutsch, E. W., Lam, H., Aebersold, R., PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 2008, 9, 429-434.
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
18
-
-
38549117407
-
PRIDE: new developments and new datasets
-
Jones, P., Cote, R. G., Cho, S. Y., Klie, S. et al., PRIDE: new developments and new datasets. Nucleic Acids Res. 2008, 36, D878-883.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Jones, P.1
Cote, R.G.2
Cho, S.Y.3
Klie, S.4
-
19
-
-
54049095667
-
A database of mass spectrometric assays for the yeast proteome
-
Picotti, P., Lam, H., Campbell, D., Deutsch, E. W. et al., A database of mass spectrometric assays for the yeast proteome. Nat. Methods 2008, 5, 913-914.
-
(2008)
Nat. Methods
, vol.5
, pp. 913-914
-
-
Picotti, P.1
Lam, H.2
Campbell, D.3
Deutsch, E.W.4
-
20
-
-
79953227740
-
Increased selectivity, analytical precision, and throughput in targeted proteomics
-
Kiyonami, R., Schoen, A., Prakash, A., Peterman, S. et al., Increased selectivity, analytical precision, and throughput in targeted proteomics. Mol. Cell Proteomics 2011, 10, M110.002931.
-
(2011)
Mol. Cell Proteomics
, vol.10
-
-
Kiyonami, R.1
Schoen, A.2
Prakash, A.3
Peterman, S.4
-
21
-
-
24044553566
-
Multiple reaction monitoring to identify sites of protein phosphorylation with high sensitivity
-
Unwin, R. D., Griffiths, J. R., Leverentz, M. K., Grallert, A. et al., Multiple reaction monitoring to identify sites of protein phosphorylation with high sensitivity. Mol. Cell Proteomics 2005, 4, 1134-1144.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1134-1144
-
-
Unwin, R.D.1
Griffiths, J.R.2
Leverentz, M.K.3
Grallert, A.4
-
22
-
-
75749126208
-
Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry
-
Abbatiello, S. E., Mani, D. R., Keshishian, H., Carr, S. A., Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry. Clin. Chem. 2010, 56, 291-305.
-
(2010)
Clin. Chem.
, vol.56
, pp. 291-305
-
-
Abbatiello, S.E.1
Mani, D.R.2
Keshishian, H.3
Carr, S.A.4
-
23
-
-
33750682085
-
Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry
-
Liu, T., Qian, W. J., Mottaz, H. M., Gritsenko, M. A. et al., Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry. Mol. Cell Proteomics 2006, 5, 2167-2174.
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 2167-2174
-
-
Liu, T.1
Qian, W.J.2
Mottaz, H.M.3
Gritsenko, M.A.4
-
24
-
-
67449097825
-
SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device
-
Anderson, N. L., Jackson, A., Smith, D., Hardie, D. et al., SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device. Mol. Cell Proteomics 2009, 8, 995-1005.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 995-1005
-
-
Anderson, N.L.1
Jackson, A.2
Smith, D.3
Hardie, D.4
-
25
-
-
55049086987
-
Use of an immunoaffinity-mass spectrometry-based approach for the quantification of protein biomarkers from serum samples of lung cancer patients
-
Nicol, G. R., Han, M., Kim, J., Birse, C. E. et al., Use of an immunoaffinity-mass spectrometry-based approach for the quantification of protein biomarkers from serum samples of lung cancer patients. Mol. Cell Proteomics 2008, 7, 1974-1982.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 1974-1982
-
-
Nicol, G.R.1
Han, M.2
Kim, J.3
Birse, C.E.4
-
26
-
-
35348863892
-
High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
-
Stahl-Zeng, J., Lange, V., Ossola, R., Eckhardt, K. et al., High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol. Cell Proteomics 2007, 6, 1809-1817.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 1809-1817
-
-
Stahl-Zeng, J.1
Lange, V.2
Ossola, R.3
Eckhardt, K.4
-
27
-
-
84860854049
-
Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics
-
Shi, T., Su, D., Liu, T., Tang, K. et al., Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics. Proteomics 2012, 12, 1074-1092.
-
(2012)
Proteomics
, vol.12
, pp. 1074-1092
-
-
Shi, T.1
Su, D.2
Liu, T.3
Tang, K.4
-
28
-
-
53049106213
-
Liquid chromatography/tandem mass spectrometry (highly selective selected reaction monitoring) for the analysis of isopropylthioxanthone in packaged food
-
Gallart-Ayala, H., Moyano, E., Galceran, M. T., Liquid chromatography/tandem mass spectrometry (highly selective selected reaction monitoring) for the analysis of isopropylthioxanthone in packaged food. J. Chromatogr. A 2008, 1208, 182-188.
-
(2008)
J. Chromatogr. A
, vol.1208
, pp. 182-188
-
-
Gallart-Ayala, H.1
Moyano, E.2
Galceran, M.T.3
-
29
-
-
77955928876
-
Fast liquid chromatography/tandem mass spectrometry (highly selective selected reaction monitoring) for the determination of toltrazuril and its metabolites in food
-
Martinez-Villalba, A., Moyano, E., Martins, C. P., Galceran, M. T., Fast liquid chromatography/tandem mass spectrometry (highly selective selected reaction monitoring) for the determination of toltrazuril and its metabolites in food. Anal. Bioanal. Chem. 2010, 397, 2893-2901.
-
(2010)
Anal. Bioanal. Chem.
, vol.397
, pp. 2893-2901
-
-
Martinez-Villalba, A.1
Moyano, E.2
Martins, C.P.3
Galceran, M.T.4
-
30
-
-
67650901565
-
Validated quantitation method for a peptide in rat serum using liquid chromatography/high-field asymmetric waveform ion mobility spectrometry
-
Klaassen, T., Szwandt, S., Kapron, J. T., Roemer, A., Validated quantitation method for a peptide in rat serum using liquid chromatography/high-field asymmetric waveform ion mobility spectrometry. Rapid Commun. Mass Spectrom. 2009, 23, 2301-2306.
-
(2009)
Rapid Commun. Mass Spectrom.
, vol.23
, pp. 2301-2306
-
-
Klaassen, T.1
Szwandt, S.2
Kapron, J.T.3
Roemer, A.4
-
31
-
-
70649087115
-
Multiple reaction monitoring cubed for protein quantification at the low nanogram/milliliter level in nondepleted human serum
-
Fortin, T., Salvador, A., Charrier, J. P., Lenz, C. et al., Multiple reaction monitoring cubed for protein quantification at the low nanogram/milliliter level in nondepleted human serum. Anal. Chem. 2009, 81, 9343-9352.
-
(2009)
Anal. Chem.
, vol.81
, pp. 9343-9352
-
-
Fortin, T.1
Salvador, A.2
Charrier, J.P.3
Lenz, C.4
-
32
-
-
79959958529
-
Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600)
-
Andrews, G. L., Simons, B. L., Young, J. B., Hawkridge, A. M., Muddiman, D. C., Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600). Anal. Chem. 2011, 83, 5442-5446.
-
(2011)
Anal. Chem.
, vol.83
, pp. 5442-5446
-
-
Andrews, G.L.1
Simons, B.L.2
Young, J.B.3
Hawkridge, A.M.4
Muddiman, D.C.5
-
33
-
-
80052769923
-
Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
-
Michalski, A., Damoc, E., Hauschild, J. P., Lange, O. et al., Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer. Mol. Cell Proteomics 2011, 10, M111.011015.
-
(2011)
Mol. Cell Proteomics
, vol.10
-
-
Michalski, A.1
Damoc, E.2
Hauschild, J.P.3
Lange, O.4
-
34
-
-
84870656540
-
Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer
-
submitted
-
Gallien, S., Duriez, E., Crone, C., Kellmann, M. et al., Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer. Mol. Cell Proteomics, submitted 2012.
-
(2012)
Mol. Cell Proteomics
-
-
Gallien, S.1
Duriez, E.2
Crone, C.3
Kellmann, M.4
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