-
1
-
-
77952134575
-
Bioluminescence in the sea
-
10.1146/annurev-marine-120308-081028, 21141672
-
Haddock SHD, Moline MA, Case JF. Bioluminescence in the sea. Ann Rev Mar Sci 2010, 2:443-493. 10.1146/annurev-marine-120308-081028, 21141672.
-
(2010)
Ann Rev Mar Sci
, vol.2
, pp. 443-493
-
-
Haddock, S.H.D.1
Moline, M.A.2
Case, J.F.3
-
2
-
-
0032837629
-
Disruptive counterillumination and its anti-predatory value in the plainfish midshipman Porichthys notatus
-
Harper RD, Case JF. Disruptive counterillumination and its anti-predatory value in the plainfish midshipman Porichthys notatus. Marine Biology 1999, 134:529-540.
-
(1999)
Marine Biology
, vol.134
, pp. 529-540
-
-
Harper, R.D.1
Case, J.F.2
-
3
-
-
0003395902
-
Dietary maintenance of bioluminescence in a deep-sea mysid
-
Frank TM, Widder EA, Latz MI, Case JF. Dietary maintenance of bioluminescence in a deep-sea mysid. J Exp Biol 1984, 109:385-389.
-
(1984)
J Exp Biol
, vol.109
, pp. 385-389
-
-
Frank, T.M.1
Widder, E.A.2
Latz, M.I.3
Case, J.F.4
-
4
-
-
0015529621
-
Bioluminescence in the marine teleost, Porichthys notatus, and its induction in a non-luminous form by Cypridina (ostracod) luciferin
-
10.1038/237515a0, 12635204
-
Tsuji FI, Barnes AT, Case JF. Bioluminescence in the marine teleost, Porichthys notatus, and its induction in a non-luminous form by Cypridina (ostracod) luciferin. Nature 1972, 237:515-516. 10.1038/237515a0, 12635204.
-
(1972)
Nature
, vol.237
, pp. 515-516
-
-
Tsuji, F.I.1
Barnes, A.T.2
Case, J.F.3
-
5
-
-
0035949480
-
Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence
-
10.1073/pnas.201329798, 58698, 11572972
-
Haddock SHD, Rivers TJ, Robison BH. Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence. Proc Natl Acad Sci USA 2001, 98:11148-11151. 10.1073/pnas.201329798, 58698, 11572972.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11148-11151
-
-
Haddock, S.H.D.1
Rivers, T.J.2
Robison, B.H.3
-
6
-
-
0022293712
-
Bioluminescence in the sea: photoprotein systems
-
Shimomura O. Bioluminescence in the sea: photoprotein systems. Symp Soc Exp Biol 1985, 39:351-372.
-
(1985)
Symp Soc Exp Biol
, vol.39
, pp. 351-372
-
-
Shimomura, O.1
-
7
-
-
34548576414
-
Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea
-
10.1002/jcp.1030590302, 13911999
-
Shimomura O, Johnson FH, Saiga Y. Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea. J Cell Comp Physiol 1962, 59:223-239. 10.1002/jcp.1030590302, 13911999.
-
(1962)
J Cell Comp Physiol
, vol.59
, pp. 223-239
-
-
Shimomura, O.1
Johnson, F.H.2
Saiga, Y.3
-
8
-
-
0015076176
-
Biochemistry of the bioluminescence of colonial hydroids and other coelenterates
-
10.1002/jcp.1040770304, 4397527
-
Morin JG, Hastings JW. Biochemistry of the bioluminescence of colonial hydroids and other coelenterates. J Cell Physiol 1971, 77:305-312. 10.1002/jcp.1040770304, 4397527.
-
(1971)
J Cell Physiol
, vol.77
, pp. 305-312
-
-
Morin, J.G.1
Hastings, J.W.2
-
9
-
-
0015958207
-
Extraction and purification of calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata
-
10.1021/bi00704a027, 4819762
-
Ward WW, Seliger HH. Extraction and purification of calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata. Biochemistry 1974, 13:1491-1499. 10.1021/bi00704a027, 4819762.
-
(1974)
Biochemistry
, vol.13
, pp. 1491-1499
-
-
Ward, W.W.1
Seliger, H.H.2
-
10
-
-
0342333575
-
Cloning and sequence analysis of cDNA for the luminescent protein aequorin
-
10.1073/pnas.82.10.3154, 397733, 3858813
-
Inouye S, Noguchi M, Sakaki Y, Takagi Y, Miyata T, Iwanaga S, Miyata T, Tsuji FI. Cloning and sequence analysis of cDNA for the luminescent protein aequorin. Proc Natl Acad Sci USA 1985, 82:3154-3158. 10.1073/pnas.82.10.3154, 397733, 3858813.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 3154-3158
-
-
Inouye, S.1
Noguchi, M.2
Sakaki, Y.3
Takagi, Y.4
Miyata, T.5
Iwanaga, S.6
Miyata, T.7
Tsuji, F.I.8
-
11
-
-
0023096432
-
Sequence comparisons of complementary DNAs encoding aequorin isotypes
-
10.1021/bi00379a019, 2882777
-
Prasher DC, McCann RO, Longiaru M, Cormier MJ. Sequence comparisons of complementary DNAs encoding aequorin isotypes. Biochemistry 1987, 26:1326-1332. 10.1021/bi00379a019, 2882777.
-
(1987)
Biochemistry
, vol.26
, pp. 1326-1332
-
-
Prasher, D.C.1
McCann, R.O.2
Longiaru, M.3
Cormier, M.J.4
-
12
-
-
0027359322
-
Cloning, expression and sequence analysis of cDNA for the Ca2+-binding photoprotein, mitrocomin
-
10.1016/0014-5793(93)80675-K, 8224198
-
Fagan TF, Ohmiya Y, Blinks JR, Inouye S, Tsuji FI. Cloning, expression and sequence analysis of cDNA for the Ca2+-binding photoprotein, mitrocomin. FEBS Lett 1993, 333:301-305. 10.1016/0014-5793(93)80675-K, 8224198.
-
(1993)
FEBS Lett
, vol.333
, pp. 301-305
-
-
Fagan, T.F.1
Ohmiya, Y.2
Blinks, J.R.3
Inouye, S.4
Tsuji, F.I.5
-
13
-
-
0027464064
-
Cloning and sequence analysis of cDNA for the Ca2+-activated photoprotein, clytin
-
10.1016/0014-5793(93)81191-2, 8422928
-
Inouye S, Tsuji FI. Cloning and sequence analysis of cDNA for the Ca2+-activated photoprotein, clytin. FEBS Lett 1993, 315:343-346. 10.1016/0014-5793(93)81191-2, 8422928.
-
(1993)
FEBS Lett
, vol.315
, pp. 343-346
-
-
Inouye, S.1
Tsuji, F.I.2
-
14
-
-
0028800629
-
Sequence of the cDNA encoding the Ca2+-activated photoprotein obelin from the hydroid polyp Obelia longissima
-
10.1016/0378-1119(94)00797-V, 7875600
-
Illarionov BA, Bondar VS, Illarionova VA, Vysotski ES. Sequence of the cDNA encoding the Ca2+-activated photoprotein obelin from the hydroid polyp Obelia longissima. Gene 1995, 153:273-274. 10.1016/0378-1119(94)00797-V, 7875600.
-
(1995)
Gene
, vol.153
, pp. 273-274
-
-
Illarionov, B.A.1
Bondar, V.S.2
Illarionova, V.A.3
Vysotski, E.S.4
-
15
-
-
0037133140
-
Obelin from the bioluminescent marine hydroid Obelia geniculata: cloning, expression, and comparison of some properties with those of other Ca2+-regulated photoproteins
-
10.1021/bi0117910, 11841214
-
Markova SV, Vysotski ES, Blinks JR, Burakova LP, Wang B-C, Lee J. Obelin from the bioluminescent marine hydroid Obelia geniculata: cloning, expression, and comparison of some properties with those of other Ca2+-regulated photoproteins. Biochemistry 2002, 41:2227-2236. 10.1021/bi0117910, 11841214.
-
(2002)
Biochemistry
, vol.41
, pp. 2227-2236
-
-
Markova, S.V.1
Vysotski, E.S.2
Blinks, J.R.3
Burakova, L.P.4
Wang, B.-C.5
Lee, J.6
-
16
-
-
84873745305
-
Isolated berovin photoprotein and use thereof
-
Golz S, Markova S, Burakova L, Frank L, Vysotski E. Isolated berovin photoprotein and use thereof. International Patent Application PCT/EP2004/009118 Publication Number WO/2005/021591 2005,
-
(2005)
International Patent Application PCT/EP2004/009118 Publication Number WO/2005/021591
-
-
Golz, S.1
Markova, S.2
Burakova, L.3
Frank, L.4
Vysotski, E.5
-
17
-
-
84857649481
-
The light-sensitive photoprotein berovin from the bioluminescent ctenophore Beroe abyssicola: a novel type of Ca2+-regulated photoprotein
-
10.1111/j.1742-4658.2012.08476.x, 22230281
-
Markova SV, Burakova LP, Golz S, Malikova NP, Frank LA, Vysotski ES. The light-sensitive photoprotein berovin from the bioluminescent ctenophore Beroe abyssicola: a novel type of Ca2+-regulated photoprotein. FEBS Journal 2012, 279:856-870. 10.1111/j.1742-4658.2012.08476.x, 22230281.
-
(2012)
FEBS Journal
, vol.279
, pp. 856-870
-
-
Markova, S.V.1
Burakova, L.P.2
Golz, S.3
Malikova, N.P.4
Frank, L.A.5
Vysotski, E.S.6
-
18
-
-
84857643585
-
-
PCT/EP2004/006608 Publication Number WO/2005/000885 (Patent)
-
Golz S, Markova S, Burakova L, Frank L, Vysotski E. Isolated photoprotein bolinopsin, and the use thereof 2005, PCT/EP2004/006608 Publication Number WO/2005/000885 (Patent).
-
(2005)
Isolated photoprotein bolinopsin, and the use thereof
-
-
Golz, S.1
Markova, S.2
Burakova, L.3
Frank, L.4
Vysotski, E.5
-
19
-
-
84873714471
-
-
PCT/EP2006/002939 Publication Number WO/2006/108518 (Patent)
-
Golz S, Vysotski E, Markova S, Burakova L, Frank L. Isolated photoprotein gr-bolinopsin and use thereof 2006, PCT/EP2006/002939 Publication Number WO/2006/108518 (Patent).
-
(2006)
Isolated photoprotein gr-bolinopsin and use thereof
-
-
Golz, S.1
Vysotski, E.2
Markova, S.3
Burakova, L.4
Frank, L.5
-
20
-
-
84855937781
-
Cloning, sequencing, expression and structural investigation of mnemiopsin from Mnemiopsis leidyi: an attempt toward understanding Ca2+-regulated photoproteins
-
10.1007/s10930-011-9363-8, 21987124
-
Aghamaali M, Jafarian V, Sariri R, Molakarimi M, Rasti B, Taghdir M, Sajedi R, Hosseinkhani S. Cloning, sequencing, expression and structural investigation of mnemiopsin from Mnemiopsis leidyi: an attempt toward understanding Ca2+-regulated photoproteins. Protein J 2011, 30:566-574. 10.1007/s10930-011-9363-8, 21987124.
-
(2011)
Protein J
, vol.30
, pp. 566-574
-
-
Aghamaali, M.1
Jafarian, V.2
Sariri, R.3
Molakarimi, M.4
Rasti, B.5
Taghdir, M.6
Sajedi, R.7
Hosseinkhani, S.8
-
21
-
-
80053101673
-
A unique EF-hand motif in mnemiopsin photoprotein from Mnemiopsis leidyi: implication for its low calcium sensitivity
-
10.1016/j.bbrc.2011.08.022, 21871870
-
Jafarian V, Sariri R, Hosseinkhani S, Aghamaali M-R, Sajedi RH, Taghdir M, Hassannia S. A unique EF-hand motif in mnemiopsin photoprotein from Mnemiopsis leidyi: implication for its low calcium sensitivity. Biochem Biophys Res Commun 2011, 413:164-170. 10.1016/j.bbrc.2011.08.022, 21871870.
-
(2011)
Biochem Biophys Res Commun
, vol.413
, pp. 164-170
-
-
Jafarian, V.1
Sariri, R.2
Hosseinkhani, S.3
Aghamaali, M.-R.4
Sajedi, R.H.5
Taghdir, M.6
Hassannia, S.7
-
22
-
-
0032454584
-
Classification and evolution of EF-hand proteins
-
10.1023/A:1009282307967, 10191494
-
Kawasaki H, Nakayama S, Kretsinger RH. Classification and evolution of EF-hand proteins. Biometals 1998, 11:277-295. 10.1023/A:1009282307967, 10191494.
-
(1998)
Biometals
, vol.11
, pp. 277-295
-
-
Kawasaki, H.1
Nakayama, S.2
Kretsinger, R.H.3
-
23
-
-
0018816959
-
Structure and evolution of calcium-modulated proteins
-
10.3109/10409238009105467, 6105043
-
Kretsinger RH. Structure and evolution of calcium-modulated proteins. CRC Crit Rev Biochem 1980, 8:119-174. 10.3109/10409238009105467, 6105043.
-
(1980)
CRC Crit Rev Biochem
, vol.8
, pp. 119-174
-
-
Kretsinger, R.H.1
-
24
-
-
0032462546
-
Structures of EF-hand Ca 2+-binding proteins: diversity in the organization, packing and response to Ca 2+ binding
-
10.1023/A:1009253808876, 10191495
-
Nelson MR, Chazin WJ. Structures of EF-hand Ca 2+-binding proteins: diversity in the organization, packing and response to Ca 2+ binding. BioMetals 1998, 11:297-318. 10.1023/A:1009253808876, 10191495.
-
(1998)
BioMetals
, vol.11
, pp. 297-318
-
-
Nelson, M.R.1
Chazin, W.J.2
-
25
-
-
20544464718
-
All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin
-
10.1110/ps.041142905, 2279293, 15689515
-
Deng L, Vysotski ES, Markova SV, Liu Z-J, Lee J, Rose J, Wang B-C. All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin. Protein Sci 2005, 14:663-675. 10.1110/ps.041142905, 2279293, 15689515.
-
(2005)
Protein Sci
, vol.14
, pp. 663-675
-
-
Deng, L.1
Vysotski, E.S.2
Markova, S.V.3
Liu, Z.-J.4
Lee, J.5
Rose, J.6
Wang, B.-C.7
-
27
-
-
0022451470
-
Isolation and properties of various molecular forms of aequorin
-
1146562, 3718467
-
Shimomura O. Isolation and properties of various molecular forms of aequorin. Biochem J 1986, 234:271-277. 1146562, 3718467.
-
(1986)
Biochem J
, vol.234
, pp. 271-277
-
-
Shimomura, O.1
-
28
-
-
0015967008
-
Properties of mnemiopsin and berovin, calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata
-
10.1021/bi00704a028, 4819763
-
Ward WW, Seliger HH. Properties of mnemiopsin and berovin, calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata. Biochemistry 1974, 13:1500-1510. 10.1021/bi00704a028, 4819763.
-
(1974)
Biochemistry
, vol.13
, pp. 1500-1510
-
-
Ward, W.W.1
Seliger, H.H.2
-
29
-
-
0025143136
-
Use of photoproteins as intracellular calcium indicators
-
1567652, 2190821
-
Blinks JR. Use of photoproteins as intracellular calcium indicators. Environ Health Perspect 1990, 84:75-81. 1567652, 2190821.
-
(1990)
Environ Health Perspect
, vol.84
, pp. 75-81
-
-
Blinks, J.R.1
-
30
-
-
0029391533
-
Molecular evolution of the Ca(2+)-binding photoproteins of the Hydrozoa
-
10.1111/j.1751-1097.1995.tb08713.x, 7480150
-
Tsuji FI, Ohmiya Y, Fagan TF, Toh H, Inouye S. Molecular evolution of the Ca(2+)-binding photoproteins of the Hydrozoa. Photochem Photobiol 1995, 62:657-661. 10.1111/j.1751-1097.1995.tb08713.x, 7480150.
-
(1995)
Photochem Photobiol
, vol.62
, pp. 657-661
-
-
Tsuji, F.I.1
Ohmiya, Y.2
Fagan, T.F.3
Toh, H.4
Inouye, S.5
-
31
-
-
33747157207
-
Calcium-regulated photoproteins of marine coelenterates
-
Vysotski E, Markova S, Frank L. Calcium-regulated photoproteins of marine coelenterates. Mol Biol 2006, 40:355-367.
-
(2006)
Mol Biol
, vol.40
, pp. 355-367
-
-
Vysotski, E.1
Markova, S.2
Frank, L.3
-
32
-
-
79955094039
-
The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
-
10.1186/2041-9139-1-9, 2959044, 20920347
-
Ryan JF, Pang K, Mullikin JC, Martindale MQ, Baxevanis AD. The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. Evodevo 2010, 1:9. 10.1186/2041-9139-1-9, 2959044, 20920347.
-
(2010)
Evodevo
, vol.1
, pp. 9
-
-
Ryan, J.F.1
Pang, K.2
Mullikin, J.C.3
Martindale, M.Q.4
Baxevanis, A.D.5
-
33
-
-
0001139584
-
Not all ctenophores are bioluminescent. Pleurobrachia
-
Haddock SHD, Case JF. Not all ctenophores are bioluminescent. Pleurobrachia. Biol Bull 1995, 189:356-362.
-
(1995)
Biol Bull
, vol.189
, pp. 356-362
-
-
Haddock, S.H.D.1
Case, J.F.2
-
34
-
-
29044435399
-
The cause of colouration in the ctenophore Beroe cucumis
-
10.1016/j.cub.2005.11.060, 16360674
-
Welch VL, Vigneron JP, Parker AR. The cause of colouration in the ctenophore Beroe cucumis. Curr Biol 2005, 15:R985-986. 10.1016/j.cub.2005.11.060, 16360674.
-
(2005)
Curr Biol
, vol.15
-
-
Welch, V.L.1
Vigneron, J.P.2
Parker, A.R.3
-
35
-
-
84873701699
-
Phosphorescence in ctenophores
-
Peters AW. Phosphorescence in ctenophores. J Exp Zool 1905, 2:103-116.
-
(1905)
J Exp Zool
, vol.2
, pp. 103-116
-
-
Peters, A.W.1
-
36
-
-
84873712778
-
Luminescence in Mnemiopsis
-
10.1085/jgp.6.4.403, 2140645, 19872081
-
Moore AR. Luminescence in Mnemiopsis. J Gen Physiol 1924, 6:403-412. 10.1085/jgp.6.4.403, 2140645, 19872081.
-
(1924)
J Gen Physiol
, vol.6
, pp. 403-412
-
-
Moore, A.R.1
-
38
-
-
0015599256
-
The development of bioluminescence in the ctenophore Mnemiopsis leidyi
-
10.1016/0012-1606(73)90321-7, 4150750
-
Freeman G, Reynolds GT. The development of bioluminescence in the ctenophore Mnemiopsis leidyi. Dev Biol 1973, 31:61-100. 10.1016/0012-1606(73)90321-7, 4150750.
-
(1973)
Dev Biol
, vol.31
, pp. 61-100
-
-
Freeman, G.1
Reynolds, G.T.2
-
39
-
-
0022180404
-
Ultrastructure of the luminescent system of the ctenophore Mnemiopsis leidyi
-
Anctil M. Ultrastructure of the luminescent system of the ctenophore Mnemiopsis leidyi. Cell Tissue Res 1985, 242:333-340.
-
(1985)
Cell Tissue Res
, vol.242
, pp. 333-340
-
-
Anctil, M.1
-
41
-
-
0016959061
-
Action spectrum and quantum yield for the photoinactivation of mnemiopsin, a bioluminescent photoprotein from the ctenophore Mnemiopsis sp
-
10.1111/j.1751-1097.1976.tb07260.x, 6979
-
Ward WW, Seliger HH. Action spectrum and quantum yield for the photoinactivation of mnemiopsin, a bioluminescent photoprotein from the ctenophore Mnemiopsis sp. Photochem Photobiol 1976, 23:351-363. 10.1111/j.1751-1097.1976.tb07260.x, 6979.
-
(1976)
Photochem Photobiol
, vol.23
, pp. 351-363
-
-
Ward, W.W.1
Seliger, H.H.2
-
42
-
-
0021459941
-
Mechanism of photoinactivation and reactivation in the bioluminescence system of the ctenophore Mnemiopsis
-
1144030, 6147135
-
Anctil M, Shimomura O. Mechanism of photoinactivation and reactivation in the bioluminescence system of the ctenophore Mnemiopsis. Biochem J 1984, 221:269-272. 1144030, 6147135.
-
(1984)
Biochem J
, vol.221
, pp. 269-272
-
-
Anctil, M.1
Shimomura, O.2
-
43
-
-
12444262986
-
Analysis of the luminescent response of the ctenophore, Mnemiopsis leidyi, to stimulation
-
10.1002/jcp.1030440303, 13233291
-
Chang JJ. Analysis of the luminescent response of the ctenophore, Mnemiopsis leidyi, to stimulation. J Cell Physiol 1954, 44:365-394. 10.1002/jcp.1030440303, 13233291.
-
(1954)
J Cell Physiol
, vol.44
, pp. 365-394
-
-
Chang, J.J.1
-
44
-
-
0022354498
-
Cholinergic and monoaminergic mechanisms associated with control of bioluminescence in the ctenophore Mnemiopsis leidyi
-
Anctil M. Cholinergic and monoaminergic mechanisms associated with control of bioluminescence in the ctenophore Mnemiopsis leidyi. J Exp Biol 1985, 119:225-238.
-
(1985)
J Exp Biol
, vol.119
, pp. 225-238
-
-
Anctil, M.1
-
45
-
-
0026625769
-
A squid that glows in the night: development of an animal-bacterial mutualism
-
206296, 1629148
-
Ruby EG, McFall-Ngai MJ. A squid that glows in the night: development of an animal-bacterial mutualism. J Bacteriol 1992, 174:4865-4870. 206296, 1629148.
-
(1992)
J Bacteriol
, vol.174
, pp. 4865-4870
-
-
Ruby, E.G.1
McFall-Ngai, M.J.2
-
46
-
-
67649841936
-
Evidence for light perception in a bioluminescent organ
-
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ. Evidence for light perception in a bioluminescent organ. Proc Natl Acad Scie USA 2009, 106:9836-9841.
-
(2009)
Proc Natl Acad Scie USA
, vol.106
, pp. 9836-9841
-
-
Tong, D.1
Rozas, N.S.2
Oakley, T.H.3
Mitchell, J.4
Colley, N.J.5
McFall-Ngai, M.J.6
-
47
-
-
77349121632
-
Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates
-
10.1186/1471-2164-11-21, 2827409, 20064230
-
Blakesley RW, Hansen NF, Gupta J, McDowell JC, Maskeri B, Barnabas BB, Brooks SY, Coleman H, Haghighi P, Ho SL, Schandler K, Stantripop S, Vogt JL, Thomas PJ, Bouffard GG, Green ED. Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates. BMC Genomics 2010, 11:21. 10.1186/1471-2164-11-21, 2827409, 20064230.
-
(2010)
BMC Genomics
, vol.11
, pp. 21
-
-
Blakesley, R.W.1
Hansen, N.F.2
Gupta, J.3
McDowell, J.C.4
Maskeri, B.5
Barnabas, B.B.6
Brooks, S.Y.7
Coleman, H.8
Haghighi, P.9
Ho, S.L.10
Schandler, K.11
Stantripop, S.12
Vogt, J.L.13
Thomas, P.J.14
Bouffard, G.G.15
Green, E.D.16
-
48
-
-
45549109750
-
Genome assembly forensics: finding the elusive mis-assembly
-
10.1186/gb-2008-9-3-r55, 2397507, 18341692
-
Phillippy AM, Schatz MC, Pop M. Genome assembly forensics: finding the elusive mis-assembly. Genome Biol 2008, 9:R55. 10.1186/gb-2008-9-3-r55, 2397507, 18341692.
-
(2008)
Genome Biol
, vol.9
-
-
Phillippy, A.M.1
Schatz, M.C.2
Pop, M.3
-
49
-
-
0002346576
-
Coelenterate bioluminescence
-
New York, NY: Academic Press, Muscatine L, Lenhoff HM
-
Morin JG. Coelenterate bioluminescence. Coelenterate Biology: Reviews and New Perspectives 1974, 397-438. New York, NY: Academic Press, Muscatine L, Lenhoff HM.
-
(1974)
Coelenterate Biology: Reviews and New Perspectives
, pp. 397-438
-
-
Morin, J.G.1
-
50
-
-
7544232732
-
Blue fluorescent protein from the calcium-sensitive photoprotein aequorin is a heat resistant enzyme, catalyzing the oxidation of coelenterazine
-
10.1016/j.febslet.2004.09.078, 15527769
-
Inouye S. Blue fluorescent protein from the calcium-sensitive photoprotein aequorin is a heat resistant enzyme, catalyzing the oxidation of coelenterazine. FEBS Lett 2004, 577:105-110. 10.1016/j.febslet.2004.09.078, 15527769.
-
(2004)
FEBS Lett
, vol.577
, pp. 105-110
-
-
Inouye, S.1
-
51
-
-
33645217326
-
Blue fluorescent protein from the calcium-sensitive photoprotein aequorin: catalytic properties for the oxidation of coelenterazine as an oxygenase
-
10.1016/j.febslet.2006.02.065, 16545379
-
Inouye S, Sasaki S. Blue fluorescent protein from the calcium-sensitive photoprotein aequorin: catalytic properties for the oxidation of coelenterazine as an oxygenase. FEBS Lett 2006, 580:1977-1982. 10.1016/j.febslet.2006.02.065, 16545379.
-
(2006)
FEBS Lett
, vol.580
, pp. 1977-1982
-
-
Inouye, S.1
Sasaki, S.2
-
53
-
-
27944477670
-
Concerted and birth-and-death evolution of multigene families
-
10.1146/annurev.genet.39.073003.112240, 1464479, 16285855
-
Nei M, Rooney AP. Concerted and birth-and-death evolution of multigene families. Ann Rev Genet 2005, 39:121-152. 10.1146/annurev.genet.39.073003.112240, 1464479, 16285855.
-
(2005)
Ann Rev Genet
, vol.39
, pp. 121-152
-
-
Nei, M.1
Rooney, A.P.2
-
54
-
-
59349108980
-
Luciferase a light source for the silica-based optical waveguides (spicules) in the demosponge Suberites domuncula
-
10.1007/s00018-008-8492-5, 19151920
-
Müller W, Kasueske M, Wang X, Schröder H, Wang Y, Pisignano D, Wiens M. Luciferase a light source for the silica-based optical waveguides (spicules) in the demosponge Suberites domuncula. Cell Mol Life Sci 2009, 66:537-552. 10.1007/s00018-008-8492-5, 19151920.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 537-552
-
-
Müller, W.1
Kasueske, M.2
Wang, X.3
Schröder, H.4
Wang, Y.5
Pisignano, D.6
Wiens, M.7
-
55
-
-
70349672702
-
Evolution of opsins and phototransduction
-
10.1098/rstb.2009.0051, 2781858, 19720651
-
Shichida Y, Matsuyama T. Evolution of opsins and phototransduction. Phil Trans R Soc B 2009, 364:2881-2895. 10.1098/rstb.2009.0051, 2781858, 19720651.
-
(2009)
Phil Trans R Soc B
, vol.364
, pp. 2881-2895
-
-
Shichida, Y.1
Matsuyama, T.2
-
56
-
-
84873731992
-
Mnemiopsis Genome Project website
-
Mnemiopsis Genome Project website. , http://research.nhgri.nih.gov/mnemiopsis
-
-
-
-
57
-
-
0012416645
-
Presumed photoreceptive cilia in a ctenophore
-
Horridge GA. Presumed photoreceptive cilia in a ctenophore. Quart J Micr Sci 1964, 105:311-317.
-
(1964)
Quart J Micr Sci
, vol.105
, pp. 311-317
-
-
Horridge, G.A.1
-
58
-
-
77955382760
-
The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway
-
10.1098/rspb.2009.1797, 2880087, 20219739
-
Plachetzki DC, Fong CR, Oakley TH. The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proc Biol Sci 2010, 277:1963-1969. 10.1098/rspb.2009.1797, 2880087, 20219739.
-
(2010)
Proc Biol Sci
, vol.277
, pp. 1963-1969
-
-
Plachetzki, D.C.1
Fong, C.R.2
Oakley, T.H.3
-
59
-
-
0000989175
-
Gene trees and species trees: molecular systematics as one-character taxonomy
-
Doyle JJ. Gene trees and species trees: molecular systematics as one-character taxonomy. Systematic Biology 1992, 17:144-163.
-
(1992)
Systematic Biology
, vol.17
, pp. 144-163
-
-
Doyle, J.J.1
-
60
-
-
65649131928
-
Gene tree discordance, phylogenetic inference and the multispecies coalescent
-
10.1016/j.tree.2009.01.009, 19307040
-
Degnan JH, Rosenberg NA. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol 2009, 24:332-340. 10.1016/j.tree.2009.01.009, 19307040.
-
(2009)
Trends Ecol Evol
, vol.24
, pp. 332-340
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
61
-
-
0032918355
-
Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores
-
Haddock SHD, Case JF. Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores. Marine Biology 1999, 133:571-582.
-
(1999)
Marine Biology
, vol.133
, pp. 571-582
-
-
Haddock, S.H.D.1
Case, J.F.2
-
62
-
-
42449094152
-
The origins of novel protein interactions during animal opsin evolution
-
10.1371/journal.pone.0001054, 2013938, 17940617
-
Plachetzki DC, Degnan BM, Oakley TH. The origins of novel protein interactions during animal opsin evolution. PLOS One 2007, 2:e1054. 10.1371/journal.pone.0001054, 2013938, 17940617.
-
(2007)
PLOS One
, vol.2
-
-
Plachetzki, D.C.1
Degnan, B.M.2
Oakley, T.H.3
-
63
-
-
45649083683
-
Evolution and functional diversity of jellyfish opsins
-
10.1016/j.cub.2007.11.059, 18160295
-
Suga H, Schmid V, Gehring WJ. Evolution and functional diversity of jellyfish opsins. Curr Biol 2008, 18:51-55. 10.1016/j.cub.2007.11.059, 18160295.
-
(2008)
Curr Biol
, vol.18
, pp. 51-55
-
-
Suga, H.1
Schmid, V.2
Gehring, W.J.3
-
65
-
-
81855224848
-
Shedding new light on opsin evolution
-
10.1098/rspb.2011.1819, 3223661, 22012981
-
Porter ML, Blasic JR, Bok MJ, Cameron EG, Pringle T, Cronin TW, Robinson PR. Shedding new light on opsin evolution. Proc Biol Sci 2012, 279:3-14. 10.1098/rspb.2011.1819, 3223661, 22012981.
-
(2012)
Proc Biol Sci
, vol.279
, pp. 3-14
-
-
Porter, M.L.1
Blasic, J.R.2
Bok, M.J.3
Cameron, E.G.4
Pringle, T.5
Cronin, T.W.6
Robinson, P.R.7
-
67
-
-
80052538358
-
Comb jellies (Ctenophora): a model for basal metazoan evolution and development
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, Crotty DA, Gann A
-
Pang K, Martindale MQ. Comb jellies (Ctenophora): a model for basal metazoan evolution and development. Emerging Model Organisms, vol 1. Volume 1 2009, 167-195. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, Crotty DA, Gann A.
-
(2009)
Emerging Model Organisms, vol 1. Volume 1
, pp. 167-195
-
-
Pang, K.1
Martindale, M.Q.2
-
68
-
-
0022960301
-
The ontogeny and maintenance of adult symmetry properties in the ctenophore, Mnemiopsis mccradyi
-
10.1016/0012-1606(86)90026-6, 2878844
-
Martindale MQ. The ontogeny and maintenance of adult symmetry properties in the ctenophore, Mnemiopsis mccradyi. Dev Biol 1986, 118:556-576. 10.1016/0012-1606(86)90026-6, 2878844.
-
(1986)
Dev Biol
, vol.118
, pp. 556-576
-
-
Martindale, M.Q.1
-
69
-
-
0013335968
-
Larval reproduction in the ctenophore Mnemiopsis mccradyi (order Lobata)
-
Martindale MQ. Larval reproduction in the ctenophore Mnemiopsis mccradyi (order Lobata). Marine Biology 1987, 94:409-414.
-
(1987)
Marine Biology
, vol.94
, pp. 409-414
-
-
Martindale, M.Q.1
-
70
-
-
77954291942
-
Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader, Mnemiopsis leidyi (Ctenophora)
-
10.1111/j.1365-294X.2010.04701.x, 20561193
-
Reusch TBH, Bolte S, Sparwel M, Moss AG, Javidpour J. Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader, Mnemiopsis leidyi (Ctenophora). Mol Ecol 2010, 19:2690-2699. 10.1111/j.1365-294X.2010.04701.x, 20561193.
-
(2010)
Mol Ecol
, vol.19
, pp. 2690-2699
-
-
Reusch, T.B.H.1
Bolte, S.2
Sparwel, M.3
Moss, A.G.4
Javidpour, J.5
-
72
-
-
0001351846
-
Patterns of stimulated bioluminescence in two pyrosomes (Tunicata: Pyrosomatidae)
-
Bowlby MR, Widder EA, Case JF. Patterns of stimulated bioluminescence in two pyrosomes (Tunicata: Pyrosomatidae). Biol Bull 1990, 179:340-350.
-
(1990)
Biol Bull
, vol.179
, pp. 340-350
-
-
Bowlby, M.R.1
Widder, E.A.2
Case, J.F.3
-
73
-
-
0011265166
-
Studies on the bioluminescence of the marine ostracod
-
Tsuji FI, Lynch RW, Haneda Y. Studies on the bioluminescence of the marine ostracod. Biol Bull 1970, 139:386-401.
-
(1970)
Biol Bull
, vol.139
, pp. 386-401
-
-
Tsuji, F.I.1
Lynch, R.W.2
Haneda, Y.3
-
74
-
-
84988144277
-
Bioluminescence displays induced by pulsed light
-
Lapota D, Losee JR, Geiger ML. Bioluminescence displays induced by pulsed light. Limnol Oceanogr 1986, 31:887-889.
-
(1986)
Limnol Oceanogr
, vol.31
, pp. 887-889
-
-
Lapota, D.1
Losee, J.R.2
Geiger, M.L.3
-
75
-
-
0011354586
-
Light-stimulated and light-inhibited bioluminescence of the euphausiid Meganyctiphanes norvegica (G.O. Sars)
-
Kay RH. Light-stimulated and light-inhibited bioluminescence of the euphausiid Meganyctiphanes norvegica (G.O. Sars). Proc R Soc Lond B Biol Sci 1965, 162:385-386.
-
(1965)
Proc R Soc Lond B Biol Sci
, vol.162
, pp. 385-386
-
-
Kay, R.H.1
-
76
-
-
77956638647
-
Light-stimulated bioluminescence of Thalassocaris crinita (Dana) (Decapoda, Caridea)
-
Herring PJ, Barnes AT. Light-stimulated bioluminescence of Thalassocaris crinita (Dana) (Decapoda, Caridea). Crustaceana 1976, 31:107-110.
-
(1976)
Crustaceana
, vol.31
, pp. 107-110
-
-
Herring, P.J.1
Barnes, A.T.2
-
77
-
-
0037263854
-
The Phusion assembler
-
10.1101/gr.731003, 430959, 12529309
-
Mullikin JC, Ning Z. The Phusion assembler. Genome Res 2003, 13:81-90. 10.1101/gr.731003, 430959, 12529309.
-
(2003)
Genome Res
, vol.13
, pp. 81-90
-
-
Mullikin, J.C.1
Ning, Z.2
-
78
-
-
0034065724
-
Ab initio gene finding in Drosophila genomic DNA
-
10.1101/gr.10.4.516, 310882, 10779491
-
Salamov AA, Solovyev VV. Ab initio gene finding in Drosophila genomic DNA. Genome Res 2000, 10:516-522. 10.1101/gr.10.4.516, 310882, 10779491.
-
(2000)
Genome Res
, vol.10
, pp. 516-522
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
79
-
-
0141905891
-
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
-
10.1093/nar/gkg770, 206470, 14500829
-
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res 2003, 31:5654-5666. 10.1093/nar/gkg770, 206470, 14500829.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5654-5666
-
-
Haas, B.J.1
Delcher, A.L.2
Mount, S.M.3
Wortman, J.R.4
Smith, R.K.5
Hannick, L.I.6
Maiti, R.7
Ronning, C.M.8
Rusch, D.B.9
Town, C.D.10
Salzberg, S.L.11
White, O.12
-
80
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
-
Haas B, Salzberg S, Zhu W, Pertea M, Allen J, Orvis J, White O, Buell C, Wortman J. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol 2008, 9:1-22.
-
(2008)
Genome Biol
, vol.9
, pp. 1-22
-
-
Haas, B.1
Salzberg, S.2
Zhu, W.3
Pertea, M.4
Allen, J.5
Orvis, J.6
White, O.7
Buell, C.8
Wortman, J.9
-
81
-
-
69749083447
-
JBrowse: a next-generation genome browser
-
10.1101/gr.094607.109, 2752129, 19570905
-
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH. JBrowse: a next-generation genome browser. Genome Res 2009, 19:1630-1638. 10.1101/gr.094607.109, 2752129, 19570905.
-
(2009)
Genome Res
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
84
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998, 8:195-202.
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
85
-
-
77951077856
-
Phred, Phrap, Consed
-
Phred, Phrap, Consed. , http://www.phrap.org/phredphrapconsed.html
-
-
-
-
86
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar R. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.1
-
87
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acid Symposium Series 1999, 41:95-98.
-
(1999)
Nucl Acid Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
88
-
-
27844519588
-
ExPASy Proteomics Server
-
ExPASy Proteomics Server. , http://www.expasy.ch/tools/pi_tool.html
-
-
-
-
89
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 1997, 13:555-556.
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
91
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
Sawyer SA. Statistical tests for detecting gene conversion. Mol Biol Evol 1989, 6:526-538.
-
(1989)
Mol Biol Evol
, vol.6
, pp. 526-538
-
-
Sawyer, S.A.1
-
92
-
-
39149110563
-
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
-
10.1038/nature06617, 2562698, 18273011
-
King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, Zuzow R, Dirks W, Good M, Goodstein D, Lemons D, Li W, Lyons JB, Morris A, Nichols S, Richter DJ, Salamov A, JGI S, Borik P, Lin WA, Manning G, et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 2008, 451:783-788. 10.1038/nature06617, 2562698, 18273011.
-
(2008)
Nature
, vol.451
, pp. 783-788
-
-
King, N.1
Westbrook, M.J.2
Young, S.L.3
Kuo, A.4
Abedin, M.5
Chapman, J.6
Fairclough, S.7
Hellsten, U.8
Isogai, Y.9
Letunic, I.10
Marr, M.11
Pincus, D.12
Putnam, N.13
Rokas, A.14
Wright, K.J.15
Zuzow, R.16
Dirks, W.17
Good, M.18
Goodstein, D.19
Lemons, D.20
Li, W.21
Lyons, J.B.22
Morris, A.23
Nichols, S.24
Richter, D.J.25
Salamov, A.26
Jgi, S.27
Borik, P.28
Lin, W.A.29
Manning, G.30
more..
-
93
-
-
50049092481
-
The Trichoplax genome and the nature of placozoans
-
10.1038/nature07191, 18719581
-
Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, Shapiro H, Grigoriev IV, Buss LW, Schierwater B, Dellaporta SL, Rokhsar DS. The Trichoplax genome and the nature of placozoans. Nature 2008, 454:955-960. 10.1038/nature07191, 18719581.
-
(2008)
Nature
, vol.454
, pp. 955-960
-
-
Srivastava, M.1
Begovic, E.2
Chapman, J.3
Putnam, N.H.4
Hellsten, U.5
Kawashima, T.6
Kuo, A.7
Mitros, T.8
Salamov, A.9
Carpenter, M.L.10
Signorovitch, A.Y.11
Moreno, M.A.12
Kamm, K.13
Grimwood, J.14
Schmutz, J.15
Shapiro, H.16
Grigoriev, I.V.17
Buss, L.W.18
Schierwater, B.19
Dellaporta, S.L.20
Rokhsar, D.S.21
more..
-
94
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
10.1126/science.1139158, 17615350
-
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 2007, 317:86-94. 10.1126/science.1139158, 17615350.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
Salamov, A.6
Terry, A.7
Shapiro, H.8
Lindquist, E.9
Kapitonov, V.V.10
Genikhovich, G.11
Grigoriev, I.V.12
Lucas, S.M.13
Steele, R.E.14
Finnerty, J.R.15
Technau, U.16
Martindale, M.Q.17
Rokhsar, D.S.18
-
95
-
-
77950080387
-
The dynamic genome of Hydra
-
10.1038/nature08830, 20228792
-
Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH, Shu S, Blumberg B, Dana CE, Gee L, Kibler DF, Law L, Lindgens D, Martinez DE, Peng J, et al. The dynamic genome of Hydra. Nature 2010, 464:592-596. 10.1038/nature08830, 20228792.
-
(2010)
Nature
, vol.464
, pp. 592-596
-
-
Chapman, J.A.1
Kirkness, E.F.2
Simakov, O.3
Hampson, S.E.4
Mitros, T.5
Weinmaier, T.6
Rattei, T.7
Balasubramanian, P.G.8
Borman, J.9
Busam, D.10
Disbennett, K.11
Pfannkoch, C.12
Sumin, N.13
Sutton, G.G.14
Viswanathan, L.D.15
Walenz, B.16
Goodstein, D.M.17
Hellsten, U.18
Kawashima, T.19
Prochnik, S.E.20
Putnam, N.H.21
Shu, S.22
Blumberg, B.23
Dana, C.E.24
Gee, L.25
Kibler, D.F.26
Law, L.27
Lindgens, D.28
Martinez, D.E.29
Peng, J.30
more..
-
96
-
-
77955490196
-
The Amphimedon queenslandica genome and the evolution of animal complexity
-
10.1038/nature09201, 3130542, 20686567
-
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 2010, 466:720-726. 10.1038/nature09201, 3130542, 20686567.
-
(2010)
Nature
, vol.466
, pp. 720-726
-
-
Srivastava, M.1
Simakov, O.2
Chapman, J.3
Fahey, B.4
Gauthier, M.E.A.5
Mitros, T.6
Richards, G.S.7
Conaco, C.8
Dacre, M.9
Hellsten, U.10
Larroux, C.11
Putnam, N.H.12
Stanke, M.13
Adamska, M.14
Darling, A.15
Degnan, S.M.16
Oakley, T.H.17
Plachetzki, D.C.18
Zhai, Y.19
Adamski, M.20
Calcino, A.21
Cummins, S.F.22
Goodstein, D.M.23
Harris, C.24
Jackson, D.J.25
Leys, S.P.26
Shu, S.27
Woodcroft, B.J.28
Vervoort, M.29
Kosik, K.S.30
more..
-
97
-
-
84873737579
-
Origins of Multicellularity Sequencing Project at the Broad Institute
-
Origins of Multicellularity Sequencing Project at the Broad Institute. , http://www.broadinstitute.org/annotation/genome/multicellularity_project/MultiDownloads.html
-
-
-
-
98
-
-
79955397162
-
Ciliary photoreceptors in the cerebral eyes of a protostome larva
-
10.1186/2041-9139-2-6, 3062599, 21362157
-
Passamaneck YJ, Furchheim N, Hejnol A, Martindale MQ, Luter C. Ciliary photoreceptors in the cerebral eyes of a protostome larva. Evodevo 2011, 2:6. 10.1186/2041-9139-2-6, 3062599, 21362157.
-
(2011)
Evodevo
, vol.2
, pp. 6
-
-
Passamaneck, Y.J.1
Furchheim, N.2
Hejnol, A.3
Martindale, M.Q.4
Luter, C.5
-
99
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
10.1093/bioinformatics/bti263, 15647292
-
Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105. 10.1093/bioinformatics/bti263, 15647292.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
100
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H. A new look at the statistical model identification. IEEE Trans Autom Contr 1974, 19:716-723.
-
(1974)
IEEE Trans Autom Contr
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
101
-
-
45849154166
-
An improved general amino acid replacement matrix
-
10.1093/molbev/msn067, 18367465
-
Le SQ, Gascuel O. An improved general amino acid replacement matrix. Mol Biol Evol 2008, 25:1307-1320. 10.1093/molbev/msn067, 18367465.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
102
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
10.1093/bioinformatics/btl446, 16928733
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690. 10.1093/bioinformatics/btl446, 16928733.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
103
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
10.1093/bioinformatics/btg180, 12912839
-
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574. 10.1093/bioinformatics/btg180, 12912839.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
104
-
-
33645010410
-
AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference
-
Wilgenbusch J, Warren D, Swofford DL. AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. , http://ceb.csit.fsu.edu/awty/
-
-
-
Wilgenbusch, J.1
Warren, D.2
Swofford, D.L.3
-
105
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520, 14530136
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704. 10.1080/10635150390235520, 14530136.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
107
-
-
40049112246
-
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
-
10.1093/bioinformatics/btm619, 18227120
-
Smith SA, Dunn CW. Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics 2008, 24:715-716. 10.1093/bioinformatics/btm619, 18227120.
-
(2008)
Bioinformatics
, vol.24
, pp. 715-716
-
-
Smith, S.A.1
Dunn, C.W.2
-
108
-
-
0034089338
-
Phylogenetic analysis and experimental approaches to study colour vision in vertebrates
-
Yokoyama S. Phylogenetic analysis and experimental approaches to study colour vision in vertebrates. Methods Enzymol 2000, 315:312-325.
-
(2000)
Methods Enzymol
, vol.315
, pp. 312-325
-
-
Yokoyama, S.1
-
109
-
-
84873704207
-
Xenbase FISH Protocols
-
Xenbase FISH Protocols. , http://www.xenbase.org/xenwiki/index.php/Wholemount_embryo_FISH_/_Double_FISH
-
-
-
-
110
-
-
34247115210
-
Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy
-
10.2144/000112462, 17612299
-
Jekely G, Arendt D. Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy. BioTechniques 2007, 42:751-755. 10.2144/000112462, 17612299.
-
(2007)
BioTechniques
, vol.42
, pp. 751-755
-
-
Jekely, G.1
Arendt, D.2
-
111
-
-
3042705822
-
Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa)
-
10.1242/dev.01119, 15128674
-
Martindale MQ, Pang K, Finnerty JR. Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa). Development 2004, 131:2463-2474. 10.1242/dev.01119, 15128674.
-
(2004)
Development
, vol.131
, pp. 2463-2474
-
-
Martindale, M.Q.1
Pang, K.2
Finnerty, J.R.3
-
112
-
-
2542546770
-
Origins of bilateral symmetry: Hox and dpp expression in a sea anemone
-
10.1126/science.1091946, 15131263
-
Finnerty J, Pang K, Burton P, Paulson D, Martindale M. Origins of bilateral symmetry: Hox and dpp expression in a sea anemone. Science 2004, 304:1335-1337. 10.1126/science.1091946, 15131263.
-
(2004)
Science
, vol.304
, pp. 1335-1337
-
-
Finnerty, J.1
Pang, K.2
Burton, P.3
Paulson, D.4
Martindale, M.5
|