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Volumn 10, Issue , 2012, Pages

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: A new view of ctenophore photocytes

Author keywords

Bioluminescence; ctenophore; Mnemiopsis leidyi; opsin; photocyte; photoprotein; photoreception; phototransduction

Indexed keywords

AMPHIMEDON; ANIMALIA; BILATERIA; CNIDARIA; CTENOPHORA (COELENTERATES); MNEMIOPSIS; MNEMIOPSIS LEIDYI; NEMATOSTELLA VECTENSIS; PORIFERA; SCYPHOZOA;

EID: 84871370966     PISSN: None     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-10-107     Document Type: Article
Times cited : (105)

References (112)
  • 1
    • 77952134575 scopus 로고    scopus 로고
    • Bioluminescence in the sea
    • 10.1146/annurev-marine-120308-081028, 21141672
    • Haddock SHD, Moline MA, Case JF. Bioluminescence in the sea. Ann Rev Mar Sci 2010, 2:443-493. 10.1146/annurev-marine-120308-081028, 21141672.
    • (2010) Ann Rev Mar Sci , vol.2 , pp. 443-493
    • Haddock, S.H.D.1    Moline, M.A.2    Case, J.F.3
  • 2
    • 0032837629 scopus 로고    scopus 로고
    • Disruptive counterillumination and its anti-predatory value in the plainfish midshipman Porichthys notatus
    • Harper RD, Case JF. Disruptive counterillumination and its anti-predatory value in the plainfish midshipman Porichthys notatus. Marine Biology 1999, 134:529-540.
    • (1999) Marine Biology , vol.134 , pp. 529-540
    • Harper, R.D.1    Case, J.F.2
  • 3
    • 0003395902 scopus 로고
    • Dietary maintenance of bioluminescence in a deep-sea mysid
    • Frank TM, Widder EA, Latz MI, Case JF. Dietary maintenance of bioluminescence in a deep-sea mysid. J Exp Biol 1984, 109:385-389.
    • (1984) J Exp Biol , vol.109 , pp. 385-389
    • Frank, T.M.1    Widder, E.A.2    Latz, M.I.3    Case, J.F.4
  • 4
    • 0015529621 scopus 로고
    • Bioluminescence in the marine teleost, Porichthys notatus, and its induction in a non-luminous form by Cypridina (ostracod) luciferin
    • 10.1038/237515a0, 12635204
    • Tsuji FI, Barnes AT, Case JF. Bioluminescence in the marine teleost, Porichthys notatus, and its induction in a non-luminous form by Cypridina (ostracod) luciferin. Nature 1972, 237:515-516. 10.1038/237515a0, 12635204.
    • (1972) Nature , vol.237 , pp. 515-516
    • Tsuji, F.I.1    Barnes, A.T.2    Case, J.F.3
  • 5
    • 0035949480 scopus 로고    scopus 로고
    • Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence
    • 10.1073/pnas.201329798, 58698, 11572972
    • Haddock SHD, Rivers TJ, Robison BH. Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence. Proc Natl Acad Sci USA 2001, 98:11148-11151. 10.1073/pnas.201329798, 58698, 11572972.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 11148-11151
    • Haddock, S.H.D.1    Rivers, T.J.2    Robison, B.H.3
  • 6
    • 0022293712 scopus 로고
    • Bioluminescence in the sea: photoprotein systems
    • Shimomura O. Bioluminescence in the sea: photoprotein systems. Symp Soc Exp Biol 1985, 39:351-372.
    • (1985) Symp Soc Exp Biol , vol.39 , pp. 351-372
    • Shimomura, O.1
  • 7
    • 34548576414 scopus 로고
    • Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea
    • 10.1002/jcp.1030590302, 13911999
    • Shimomura O, Johnson FH, Saiga Y. Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea. J Cell Comp Physiol 1962, 59:223-239. 10.1002/jcp.1030590302, 13911999.
    • (1962) J Cell Comp Physiol , vol.59 , pp. 223-239
    • Shimomura, O.1    Johnson, F.H.2    Saiga, Y.3
  • 8
    • 0015076176 scopus 로고
    • Biochemistry of the bioluminescence of colonial hydroids and other coelenterates
    • 10.1002/jcp.1040770304, 4397527
    • Morin JG, Hastings JW. Biochemistry of the bioluminescence of colonial hydroids and other coelenterates. J Cell Physiol 1971, 77:305-312. 10.1002/jcp.1040770304, 4397527.
    • (1971) J Cell Physiol , vol.77 , pp. 305-312
    • Morin, J.G.1    Hastings, J.W.2
  • 9
    • 0015958207 scopus 로고
    • Extraction and purification of calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata
    • 10.1021/bi00704a027, 4819762
    • Ward WW, Seliger HH. Extraction and purification of calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata. Biochemistry 1974, 13:1491-1499. 10.1021/bi00704a027, 4819762.
    • (1974) Biochemistry , vol.13 , pp. 1491-1499
    • Ward, W.W.1    Seliger, H.H.2
  • 11
    • 0023096432 scopus 로고
    • Sequence comparisons of complementary DNAs encoding aequorin isotypes
    • 10.1021/bi00379a019, 2882777
    • Prasher DC, McCann RO, Longiaru M, Cormier MJ. Sequence comparisons of complementary DNAs encoding aequorin isotypes. Biochemistry 1987, 26:1326-1332. 10.1021/bi00379a019, 2882777.
    • (1987) Biochemistry , vol.26 , pp. 1326-1332
    • Prasher, D.C.1    McCann, R.O.2    Longiaru, M.3    Cormier, M.J.4
  • 12
    • 0027359322 scopus 로고
    • Cloning, expression and sequence analysis of cDNA for the Ca2+-binding photoprotein, mitrocomin
    • 10.1016/0014-5793(93)80675-K, 8224198
    • Fagan TF, Ohmiya Y, Blinks JR, Inouye S, Tsuji FI. Cloning, expression and sequence analysis of cDNA for the Ca2+-binding photoprotein, mitrocomin. FEBS Lett 1993, 333:301-305. 10.1016/0014-5793(93)80675-K, 8224198.
    • (1993) FEBS Lett , vol.333 , pp. 301-305
    • Fagan, T.F.1    Ohmiya, Y.2    Blinks, J.R.3    Inouye, S.4    Tsuji, F.I.5
  • 13
    • 0027464064 scopus 로고
    • Cloning and sequence analysis of cDNA for the Ca2+-activated photoprotein, clytin
    • 10.1016/0014-5793(93)81191-2, 8422928
    • Inouye S, Tsuji FI. Cloning and sequence analysis of cDNA for the Ca2+-activated photoprotein, clytin. FEBS Lett 1993, 315:343-346. 10.1016/0014-5793(93)81191-2, 8422928.
    • (1993) FEBS Lett , vol.315 , pp. 343-346
    • Inouye, S.1    Tsuji, F.I.2
  • 14
    • 0028800629 scopus 로고
    • Sequence of the cDNA encoding the Ca2+-activated photoprotein obelin from the hydroid polyp Obelia longissima
    • 10.1016/0378-1119(94)00797-V, 7875600
    • Illarionov BA, Bondar VS, Illarionova VA, Vysotski ES. Sequence of the cDNA encoding the Ca2+-activated photoprotein obelin from the hydroid polyp Obelia longissima. Gene 1995, 153:273-274. 10.1016/0378-1119(94)00797-V, 7875600.
    • (1995) Gene , vol.153 , pp. 273-274
    • Illarionov, B.A.1    Bondar, V.S.2    Illarionova, V.A.3    Vysotski, E.S.4
  • 15
    • 0037133140 scopus 로고    scopus 로고
    • Obelin from the bioluminescent marine hydroid Obelia geniculata: cloning, expression, and comparison of some properties with those of other Ca2+-regulated photoproteins
    • 10.1021/bi0117910, 11841214
    • Markova SV, Vysotski ES, Blinks JR, Burakova LP, Wang B-C, Lee J. Obelin from the bioluminescent marine hydroid Obelia geniculata: cloning, expression, and comparison of some properties with those of other Ca2+-regulated photoproteins. Biochemistry 2002, 41:2227-2236. 10.1021/bi0117910, 11841214.
    • (2002) Biochemistry , vol.41 , pp. 2227-2236
    • Markova, S.V.1    Vysotski, E.S.2    Blinks, J.R.3    Burakova, L.P.4    Wang, B.-C.5    Lee, J.6
  • 17
    • 84857649481 scopus 로고    scopus 로고
    • The light-sensitive photoprotein berovin from the bioluminescent ctenophore Beroe abyssicola: a novel type of Ca2+-regulated photoprotein
    • 10.1111/j.1742-4658.2012.08476.x, 22230281
    • Markova SV, Burakova LP, Golz S, Malikova NP, Frank LA, Vysotski ES. The light-sensitive photoprotein berovin from the bioluminescent ctenophore Beroe abyssicola: a novel type of Ca2+-regulated photoprotein. FEBS Journal 2012, 279:856-870. 10.1111/j.1742-4658.2012.08476.x, 22230281.
    • (2012) FEBS Journal , vol.279 , pp. 856-870
    • Markova, S.V.1    Burakova, L.P.2    Golz, S.3    Malikova, N.P.4    Frank, L.A.5    Vysotski, E.S.6
  • 20
    • 84855937781 scopus 로고    scopus 로고
    • Cloning, sequencing, expression and structural investigation of mnemiopsin from Mnemiopsis leidyi: an attempt toward understanding Ca2+-regulated photoproteins
    • 10.1007/s10930-011-9363-8, 21987124
    • Aghamaali M, Jafarian V, Sariri R, Molakarimi M, Rasti B, Taghdir M, Sajedi R, Hosseinkhani S. Cloning, sequencing, expression and structural investigation of mnemiopsin from Mnemiopsis leidyi: an attempt toward understanding Ca2+-regulated photoproteins. Protein J 2011, 30:566-574. 10.1007/s10930-011-9363-8, 21987124.
    • (2011) Protein J , vol.30 , pp. 566-574
    • Aghamaali, M.1    Jafarian, V.2    Sariri, R.3    Molakarimi, M.4    Rasti, B.5    Taghdir, M.6    Sajedi, R.7    Hosseinkhani, S.8
  • 21
    • 80053101673 scopus 로고    scopus 로고
    • A unique EF-hand motif in mnemiopsin photoprotein from Mnemiopsis leidyi: implication for its low calcium sensitivity
    • 10.1016/j.bbrc.2011.08.022, 21871870
    • Jafarian V, Sariri R, Hosseinkhani S, Aghamaali M-R, Sajedi RH, Taghdir M, Hassannia S. A unique EF-hand motif in mnemiopsin photoprotein from Mnemiopsis leidyi: implication for its low calcium sensitivity. Biochem Biophys Res Commun 2011, 413:164-170. 10.1016/j.bbrc.2011.08.022, 21871870.
    • (2011) Biochem Biophys Res Commun , vol.413 , pp. 164-170
    • Jafarian, V.1    Sariri, R.2    Hosseinkhani, S.3    Aghamaali, M.-R.4    Sajedi, R.H.5    Taghdir, M.6    Hassannia, S.7
  • 22
    • 0032454584 scopus 로고    scopus 로고
    • Classification and evolution of EF-hand proteins
    • 10.1023/A:1009282307967, 10191494
    • Kawasaki H, Nakayama S, Kretsinger RH. Classification and evolution of EF-hand proteins. Biometals 1998, 11:277-295. 10.1023/A:1009282307967, 10191494.
    • (1998) Biometals , vol.11 , pp. 277-295
    • Kawasaki, H.1    Nakayama, S.2    Kretsinger, R.H.3
  • 23
    • 0018816959 scopus 로고
    • Structure and evolution of calcium-modulated proteins
    • 10.3109/10409238009105467, 6105043
    • Kretsinger RH. Structure and evolution of calcium-modulated proteins. CRC Crit Rev Biochem 1980, 8:119-174. 10.3109/10409238009105467, 6105043.
    • (1980) CRC Crit Rev Biochem , vol.8 , pp. 119-174
    • Kretsinger, R.H.1
  • 24
    • 0032462546 scopus 로고    scopus 로고
    • Structures of EF-hand Ca 2+-binding proteins: diversity in the organization, packing and response to Ca 2+ binding
    • 10.1023/A:1009253808876, 10191495
    • Nelson MR, Chazin WJ. Structures of EF-hand Ca 2+-binding proteins: diversity in the organization, packing and response to Ca 2+ binding. BioMetals 1998, 11:297-318. 10.1023/A:1009253808876, 10191495.
    • (1998) BioMetals , vol.11 , pp. 297-318
    • Nelson, M.R.1    Chazin, W.J.2
  • 25
    • 20544464718 scopus 로고    scopus 로고
    • All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin
    • 10.1110/ps.041142905, 2279293, 15689515
    • Deng L, Vysotski ES, Markova SV, Liu Z-J, Lee J, Rose J, Wang B-C. All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin. Protein Sci 2005, 14:663-675. 10.1110/ps.041142905, 2279293, 15689515.
    • (2005) Protein Sci , vol.14 , pp. 663-675
    • Deng, L.1    Vysotski, E.S.2    Markova, S.V.3    Liu, Z.-J.4    Lee, J.5    Rose, J.6    Wang, B.-C.7
  • 27
    • 0022451470 scopus 로고
    • Isolation and properties of various molecular forms of aequorin
    • 1146562, 3718467
    • Shimomura O. Isolation and properties of various molecular forms of aequorin. Biochem J 1986, 234:271-277. 1146562, 3718467.
    • (1986) Biochem J , vol.234 , pp. 271-277
    • Shimomura, O.1
  • 28
    • 0015967008 scopus 로고
    • Properties of mnemiopsin and berovin, calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata
    • 10.1021/bi00704a028, 4819763
    • Ward WW, Seliger HH. Properties of mnemiopsin and berovin, calcium-activated photoproteins from the ctenophores Mnemiopsis sp. and Beroë ovata. Biochemistry 1974, 13:1500-1510. 10.1021/bi00704a028, 4819763.
    • (1974) Biochemistry , vol.13 , pp. 1500-1510
    • Ward, W.W.1    Seliger, H.H.2
  • 29
    • 0025143136 scopus 로고
    • Use of photoproteins as intracellular calcium indicators
    • 1567652, 2190821
    • Blinks JR. Use of photoproteins as intracellular calcium indicators. Environ Health Perspect 1990, 84:75-81. 1567652, 2190821.
    • (1990) Environ Health Perspect , vol.84 , pp. 75-81
    • Blinks, J.R.1
  • 30
    • 0029391533 scopus 로고
    • Molecular evolution of the Ca(2+)-binding photoproteins of the Hydrozoa
    • 10.1111/j.1751-1097.1995.tb08713.x, 7480150
    • Tsuji FI, Ohmiya Y, Fagan TF, Toh H, Inouye S. Molecular evolution of the Ca(2+)-binding photoproteins of the Hydrozoa. Photochem Photobiol 1995, 62:657-661. 10.1111/j.1751-1097.1995.tb08713.x, 7480150.
    • (1995) Photochem Photobiol , vol.62 , pp. 657-661
    • Tsuji, F.I.1    Ohmiya, Y.2    Fagan, T.F.3    Toh, H.4    Inouye, S.5
  • 31
    • 33747157207 scopus 로고    scopus 로고
    • Calcium-regulated photoproteins of marine coelenterates
    • Vysotski E, Markova S, Frank L. Calcium-regulated photoproteins of marine coelenterates. Mol Biol 2006, 40:355-367.
    • (2006) Mol Biol , vol.40 , pp. 355-367
    • Vysotski, E.1    Markova, S.2    Frank, L.3
  • 32
    • 79955094039 scopus 로고    scopus 로고
    • The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
    • 10.1186/2041-9139-1-9, 2959044, 20920347
    • Ryan JF, Pang K, Mullikin JC, Martindale MQ, Baxevanis AD. The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. Evodevo 2010, 1:9. 10.1186/2041-9139-1-9, 2959044, 20920347.
    • (2010) Evodevo , vol.1 , pp. 9
    • Ryan, J.F.1    Pang, K.2    Mullikin, J.C.3    Martindale, M.Q.4    Baxevanis, A.D.5
  • 33
    • 0001139584 scopus 로고
    • Not all ctenophores are bioluminescent. Pleurobrachia
    • Haddock SHD, Case JF. Not all ctenophores are bioluminescent. Pleurobrachia. Biol Bull 1995, 189:356-362.
    • (1995) Biol Bull , vol.189 , pp. 356-362
    • Haddock, S.H.D.1    Case, J.F.2
  • 34
    • 29044435399 scopus 로고    scopus 로고
    • The cause of colouration in the ctenophore Beroe cucumis
    • 10.1016/j.cub.2005.11.060, 16360674
    • Welch VL, Vigneron JP, Parker AR. The cause of colouration in the ctenophore Beroe cucumis. Curr Biol 2005, 15:R985-986. 10.1016/j.cub.2005.11.060, 16360674.
    • (2005) Curr Biol , vol.15
    • Welch, V.L.1    Vigneron, J.P.2    Parker, A.R.3
  • 35
    • 84873701699 scopus 로고
    • Phosphorescence in ctenophores
    • Peters AW. Phosphorescence in ctenophores. J Exp Zool 1905, 2:103-116.
    • (1905) J Exp Zool , vol.2 , pp. 103-116
    • Peters, A.W.1
  • 36
    • 84873712778 scopus 로고
    • Luminescence in Mnemiopsis
    • 10.1085/jgp.6.4.403, 2140645, 19872081
    • Moore AR. Luminescence in Mnemiopsis. J Gen Physiol 1924, 6:403-412. 10.1085/jgp.6.4.403, 2140645, 19872081.
    • (1924) J Gen Physiol , vol.6 , pp. 403-412
    • Moore, A.R.1
  • 38
    • 0015599256 scopus 로고
    • The development of bioluminescence in the ctenophore Mnemiopsis leidyi
    • 10.1016/0012-1606(73)90321-7, 4150750
    • Freeman G, Reynolds GT. The development of bioluminescence in the ctenophore Mnemiopsis leidyi. Dev Biol 1973, 31:61-100. 10.1016/0012-1606(73)90321-7, 4150750.
    • (1973) Dev Biol , vol.31 , pp. 61-100
    • Freeman, G.1    Reynolds, G.T.2
  • 39
    • 0022180404 scopus 로고
    • Ultrastructure of the luminescent system of the ctenophore Mnemiopsis leidyi
    • Anctil M. Ultrastructure of the luminescent system of the ctenophore Mnemiopsis leidyi. Cell Tissue Res 1985, 242:333-340.
    • (1985) Cell Tissue Res , vol.242 , pp. 333-340
    • Anctil, M.1
  • 41
    • 0016959061 scopus 로고
    • Action spectrum and quantum yield for the photoinactivation of mnemiopsin, a bioluminescent photoprotein from the ctenophore Mnemiopsis sp
    • 10.1111/j.1751-1097.1976.tb07260.x, 6979
    • Ward WW, Seliger HH. Action spectrum and quantum yield for the photoinactivation of mnemiopsin, a bioluminescent photoprotein from the ctenophore Mnemiopsis sp. Photochem Photobiol 1976, 23:351-363. 10.1111/j.1751-1097.1976.tb07260.x, 6979.
    • (1976) Photochem Photobiol , vol.23 , pp. 351-363
    • Ward, W.W.1    Seliger, H.H.2
  • 42
    • 0021459941 scopus 로고
    • Mechanism of photoinactivation and reactivation in the bioluminescence system of the ctenophore Mnemiopsis
    • 1144030, 6147135
    • Anctil M, Shimomura O. Mechanism of photoinactivation and reactivation in the bioluminescence system of the ctenophore Mnemiopsis. Biochem J 1984, 221:269-272. 1144030, 6147135.
    • (1984) Biochem J , vol.221 , pp. 269-272
    • Anctil, M.1    Shimomura, O.2
  • 43
    • 12444262986 scopus 로고
    • Analysis of the luminescent response of the ctenophore, Mnemiopsis leidyi, to stimulation
    • 10.1002/jcp.1030440303, 13233291
    • Chang JJ. Analysis of the luminescent response of the ctenophore, Mnemiopsis leidyi, to stimulation. J Cell Physiol 1954, 44:365-394. 10.1002/jcp.1030440303, 13233291.
    • (1954) J Cell Physiol , vol.44 , pp. 365-394
    • Chang, J.J.1
  • 44
    • 0022354498 scopus 로고
    • Cholinergic and monoaminergic mechanisms associated with control of bioluminescence in the ctenophore Mnemiopsis leidyi
    • Anctil M. Cholinergic and monoaminergic mechanisms associated with control of bioluminescence in the ctenophore Mnemiopsis leidyi. J Exp Biol 1985, 119:225-238.
    • (1985) J Exp Biol , vol.119 , pp. 225-238
    • Anctil, M.1
  • 45
    • 0026625769 scopus 로고
    • A squid that glows in the night: development of an animal-bacterial mutualism
    • 206296, 1629148
    • Ruby EG, McFall-Ngai MJ. A squid that glows in the night: development of an animal-bacterial mutualism. J Bacteriol 1992, 174:4865-4870. 206296, 1629148.
    • (1992) J Bacteriol , vol.174 , pp. 4865-4870
    • Ruby, E.G.1    McFall-Ngai, M.J.2
  • 48
    • 45549109750 scopus 로고    scopus 로고
    • Genome assembly forensics: finding the elusive mis-assembly
    • 10.1186/gb-2008-9-3-r55, 2397507, 18341692
    • Phillippy AM, Schatz MC, Pop M. Genome assembly forensics: finding the elusive mis-assembly. Genome Biol 2008, 9:R55. 10.1186/gb-2008-9-3-r55, 2397507, 18341692.
    • (2008) Genome Biol , vol.9
    • Phillippy, A.M.1    Schatz, M.C.2    Pop, M.3
  • 49
    • 0002346576 scopus 로고
    • Coelenterate bioluminescence
    • New York, NY: Academic Press, Muscatine L, Lenhoff HM
    • Morin JG. Coelenterate bioluminescence. Coelenterate Biology: Reviews and New Perspectives 1974, 397-438. New York, NY: Academic Press, Muscatine L, Lenhoff HM.
    • (1974) Coelenterate Biology: Reviews and New Perspectives , pp. 397-438
    • Morin, J.G.1
  • 50
    • 7544232732 scopus 로고    scopus 로고
    • Blue fluorescent protein from the calcium-sensitive photoprotein aequorin is a heat resistant enzyme, catalyzing the oxidation of coelenterazine
    • 10.1016/j.febslet.2004.09.078, 15527769
    • Inouye S. Blue fluorescent protein from the calcium-sensitive photoprotein aequorin is a heat resistant enzyme, catalyzing the oxidation of coelenterazine. FEBS Lett 2004, 577:105-110. 10.1016/j.febslet.2004.09.078, 15527769.
    • (2004) FEBS Lett , vol.577 , pp. 105-110
    • Inouye, S.1
  • 51
    • 33645217326 scopus 로고    scopus 로고
    • Blue fluorescent protein from the calcium-sensitive photoprotein aequorin: catalytic properties for the oxidation of coelenterazine as an oxygenase
    • 10.1016/j.febslet.2006.02.065, 16545379
    • Inouye S, Sasaki S. Blue fluorescent protein from the calcium-sensitive photoprotein aequorin: catalytic properties for the oxidation of coelenterazine as an oxygenase. FEBS Lett 2006, 580:1977-1982. 10.1016/j.febslet.2006.02.065, 16545379.
    • (2006) FEBS Lett , vol.580 , pp. 1977-1982
    • Inouye, S.1    Sasaki, S.2
  • 53
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • 10.1146/annurev.genet.39.073003.112240, 1464479, 16285855
    • Nei M, Rooney AP. Concerted and birth-and-death evolution of multigene families. Ann Rev Genet 2005, 39:121-152. 10.1146/annurev.genet.39.073003.112240, 1464479, 16285855.
    • (2005) Ann Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 54
    • 59349108980 scopus 로고    scopus 로고
    • Luciferase a light source for the silica-based optical waveguides (spicules) in the demosponge Suberites domuncula
    • 10.1007/s00018-008-8492-5, 19151920
    • Müller W, Kasueske M, Wang X, Schröder H, Wang Y, Pisignano D, Wiens M. Luciferase a light source for the silica-based optical waveguides (spicules) in the demosponge Suberites domuncula. Cell Mol Life Sci 2009, 66:537-552. 10.1007/s00018-008-8492-5, 19151920.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 537-552
    • Müller, W.1    Kasueske, M.2    Wang, X.3    Schröder, H.4    Wang, Y.5    Pisignano, D.6    Wiens, M.7
  • 55
    • 70349672702 scopus 로고    scopus 로고
    • Evolution of opsins and phototransduction
    • 10.1098/rstb.2009.0051, 2781858, 19720651
    • Shichida Y, Matsuyama T. Evolution of opsins and phototransduction. Phil Trans R Soc B 2009, 364:2881-2895. 10.1098/rstb.2009.0051, 2781858, 19720651.
    • (2009) Phil Trans R Soc B , vol.364 , pp. 2881-2895
    • Shichida, Y.1    Matsuyama, T.2
  • 56
    • 84873731992 scopus 로고    scopus 로고
    • Mnemiopsis Genome Project website
    • Mnemiopsis Genome Project website. , http://research.nhgri.nih.gov/mnemiopsis
  • 57
    • 0012416645 scopus 로고
    • Presumed photoreceptive cilia in a ctenophore
    • Horridge GA. Presumed photoreceptive cilia in a ctenophore. Quart J Micr Sci 1964, 105:311-317.
    • (1964) Quart J Micr Sci , vol.105 , pp. 311-317
    • Horridge, G.A.1
  • 58
    • 77955382760 scopus 로고    scopus 로고
    • The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway
    • 10.1098/rspb.2009.1797, 2880087, 20219739
    • Plachetzki DC, Fong CR, Oakley TH. The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proc Biol Sci 2010, 277:1963-1969. 10.1098/rspb.2009.1797, 2880087, 20219739.
    • (2010) Proc Biol Sci , vol.277 , pp. 1963-1969
    • Plachetzki, D.C.1    Fong, C.R.2    Oakley, T.H.3
  • 59
    • 0000989175 scopus 로고
    • Gene trees and species trees: molecular systematics as one-character taxonomy
    • Doyle JJ. Gene trees and species trees: molecular systematics as one-character taxonomy. Systematic Biology 1992, 17:144-163.
    • (1992) Systematic Biology , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 60
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • 10.1016/j.tree.2009.01.009, 19307040
    • Degnan JH, Rosenberg NA. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol 2009, 24:332-340. 10.1016/j.tree.2009.01.009, 19307040.
    • (2009) Trends Ecol Evol , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 61
    • 0032918355 scopus 로고    scopus 로고
    • Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores
    • Haddock SHD, Case JF. Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores. Marine Biology 1999, 133:571-582.
    • (1999) Marine Biology , vol.133 , pp. 571-582
    • Haddock, S.H.D.1    Case, J.F.2
  • 62
    • 42449094152 scopus 로고    scopus 로고
    • The origins of novel protein interactions during animal opsin evolution
    • 10.1371/journal.pone.0001054, 2013938, 17940617
    • Plachetzki DC, Degnan BM, Oakley TH. The origins of novel protein interactions during animal opsin evolution. PLOS One 2007, 2:e1054. 10.1371/journal.pone.0001054, 2013938, 17940617.
    • (2007) PLOS One , vol.2
    • Plachetzki, D.C.1    Degnan, B.M.2    Oakley, T.H.3
  • 63
    • 45649083683 scopus 로고    scopus 로고
    • Evolution and functional diversity of jellyfish opsins
    • 10.1016/j.cub.2007.11.059, 18160295
    • Suga H, Schmid V, Gehring WJ. Evolution and functional diversity of jellyfish opsins. Curr Biol 2008, 18:51-55. 10.1016/j.cub.2007.11.059, 18160295.
    • (2008) Curr Biol , vol.18 , pp. 51-55
    • Suga, H.1    Schmid, V.2    Gehring, W.J.3
  • 67
    • 80052538358 scopus 로고    scopus 로고
    • Comb jellies (Ctenophora): a model for basal metazoan evolution and development
    • Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, Crotty DA, Gann A
    • Pang K, Martindale MQ. Comb jellies (Ctenophora): a model for basal metazoan evolution and development. Emerging Model Organisms, vol 1. Volume 1 2009, 167-195. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, Crotty DA, Gann A.
    • (2009) Emerging Model Organisms, vol 1. Volume 1 , pp. 167-195
    • Pang, K.1    Martindale, M.Q.2
  • 68
    • 0022960301 scopus 로고
    • The ontogeny and maintenance of adult symmetry properties in the ctenophore, Mnemiopsis mccradyi
    • 10.1016/0012-1606(86)90026-6, 2878844
    • Martindale MQ. The ontogeny and maintenance of adult symmetry properties in the ctenophore, Mnemiopsis mccradyi. Dev Biol 1986, 118:556-576. 10.1016/0012-1606(86)90026-6, 2878844.
    • (1986) Dev Biol , vol.118 , pp. 556-576
    • Martindale, M.Q.1
  • 69
    • 0013335968 scopus 로고
    • Larval reproduction in the ctenophore Mnemiopsis mccradyi (order Lobata)
    • Martindale MQ. Larval reproduction in the ctenophore Mnemiopsis mccradyi (order Lobata). Marine Biology 1987, 94:409-414.
    • (1987) Marine Biology , vol.94 , pp. 409-414
    • Martindale, M.Q.1
  • 70
    • 77954291942 scopus 로고    scopus 로고
    • Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader, Mnemiopsis leidyi (Ctenophora)
    • 10.1111/j.1365-294X.2010.04701.x, 20561193
    • Reusch TBH, Bolte S, Sparwel M, Moss AG, Javidpour J. Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader, Mnemiopsis leidyi (Ctenophora). Mol Ecol 2010, 19:2690-2699. 10.1111/j.1365-294X.2010.04701.x, 20561193.
    • (2010) Mol Ecol , vol.19 , pp. 2690-2699
    • Reusch, T.B.H.1    Bolte, S.2    Sparwel, M.3    Moss, A.G.4    Javidpour, J.5
  • 72
    • 0001351846 scopus 로고
    • Patterns of stimulated bioluminescence in two pyrosomes (Tunicata: Pyrosomatidae)
    • Bowlby MR, Widder EA, Case JF. Patterns of stimulated bioluminescence in two pyrosomes (Tunicata: Pyrosomatidae). Biol Bull 1990, 179:340-350.
    • (1990) Biol Bull , vol.179 , pp. 340-350
    • Bowlby, M.R.1    Widder, E.A.2    Case, J.F.3
  • 73
    • 0011265166 scopus 로고
    • Studies on the bioluminescence of the marine ostracod
    • Tsuji FI, Lynch RW, Haneda Y. Studies on the bioluminescence of the marine ostracod. Biol Bull 1970, 139:386-401.
    • (1970) Biol Bull , vol.139 , pp. 386-401
    • Tsuji, F.I.1    Lynch, R.W.2    Haneda, Y.3
  • 74
    • 84988144277 scopus 로고
    • Bioluminescence displays induced by pulsed light
    • Lapota D, Losee JR, Geiger ML. Bioluminescence displays induced by pulsed light. Limnol Oceanogr 1986, 31:887-889.
    • (1986) Limnol Oceanogr , vol.31 , pp. 887-889
    • Lapota, D.1    Losee, J.R.2    Geiger, M.L.3
  • 75
    • 0011354586 scopus 로고
    • Light-stimulated and light-inhibited bioluminescence of the euphausiid Meganyctiphanes norvegica (G.O. Sars)
    • Kay RH. Light-stimulated and light-inhibited bioluminescence of the euphausiid Meganyctiphanes norvegica (G.O. Sars). Proc R Soc Lond B Biol Sci 1965, 162:385-386.
    • (1965) Proc R Soc Lond B Biol Sci , vol.162 , pp. 385-386
    • Kay, R.H.1
  • 76
    • 77956638647 scopus 로고
    • Light-stimulated bioluminescence of Thalassocaris crinita (Dana) (Decapoda, Caridea)
    • Herring PJ, Barnes AT. Light-stimulated bioluminescence of Thalassocaris crinita (Dana) (Decapoda, Caridea). Crustaceana 1976, 31:107-110.
    • (1976) Crustaceana , vol.31 , pp. 107-110
    • Herring, P.J.1    Barnes, A.T.2
  • 77
    • 0037263854 scopus 로고    scopus 로고
    • The Phusion assembler
    • 10.1101/gr.731003, 430959, 12529309
    • Mullikin JC, Ning Z. The Phusion assembler. Genome Res 2003, 13:81-90. 10.1101/gr.731003, 430959, 12529309.
    • (2003) Genome Res , vol.13 , pp. 81-90
    • Mullikin, J.C.1    Ning, Z.2
  • 78
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • 10.1101/gr.10.4.516, 310882, 10779491
    • Salamov AA, Solovyev VV. Ab initio gene finding in Drosophila genomic DNA. Genome Res 2000, 10:516-522. 10.1101/gr.10.4.516, 310882, 10779491.
    • (2000) Genome Res , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 80
    • 42949086676 scopus 로고    scopus 로고
    • Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
    • Haas B, Salzberg S, Zhu W, Pertea M, Allen J, Orvis J, White O, Buell C, Wortman J. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol 2008, 9:1-22.
    • (2008) Genome Biol , vol.9 , pp. 1-22
    • Haas, B.1    Salzberg, S.2    Zhu, W.3    Pertea, M.4    Allen, J.5    Orvis, J.6    White, O.7    Buell, C.8    Wortman, J.9
  • 81
    • 69749083447 scopus 로고    scopus 로고
    • JBrowse: a next-generation genome browser
    • 10.1101/gr.094607.109, 2752129, 19570905
    • Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH. JBrowse: a next-generation genome browser. Genome Res 2009, 19:1630-1638. 10.1101/gr.094607.109, 2752129, 19570905.
    • (2009) Genome Res , vol.19 , pp. 1630-1638
    • Skinner, M.E.1    Uzilov, A.V.2    Stein, L.D.3    Mungall, C.J.4    Holmes, I.H.5
  • 84
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998, 8:195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 85
    • 77951077856 scopus 로고    scopus 로고
    • Phred, Phrap, Consed
    • Phred, Phrap, Consed. , http://www.phrap.org/phredphrapconsed.html
  • 86
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar R. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.1
  • 87
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acid Symposium Series 1999, 41:95-98.
    • (1999) Nucl Acid Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 88
    • 27844519588 scopus 로고    scopus 로고
    • ExPASy Proteomics Server
    • ExPASy Proteomics Server. , http://www.expasy.ch/tools/pi_tool.html
  • 89
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 1997, 13:555-556.
    • (1997) CABIOS , vol.13 , pp. 555-556
    • Yang, Z.1
  • 91
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer SA. Statistical tests for detecting gene conversion. Mol Biol Evol 1989, 6:526-538.
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.A.1
  • 97
    • 84873737579 scopus 로고    scopus 로고
    • Origins of Multicellularity Sequencing Project at the Broad Institute
    • Origins of Multicellularity Sequencing Project at the Broad Institute. , http://www.broadinstitute.org/annotation/genome/multicellularity_project/MultiDownloads.html
  • 98
    • 79955397162 scopus 로고    scopus 로고
    • Ciliary photoreceptors in the cerebral eyes of a protostome larva
    • 10.1186/2041-9139-2-6, 3062599, 21362157
    • Passamaneck YJ, Furchheim N, Hejnol A, Martindale MQ, Luter C. Ciliary photoreceptors in the cerebral eyes of a protostome larva. Evodevo 2011, 2:6. 10.1186/2041-9139-2-6, 3062599, 21362157.
    • (2011) Evodevo , vol.2 , pp. 6
    • Passamaneck, Y.J.1    Furchheim, N.2    Hejnol, A.3    Martindale, M.Q.4    Luter, C.5
  • 99
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • 10.1093/bioinformatics/bti263, 15647292
    • Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105. 10.1093/bioinformatics/bti263, 15647292.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 100
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • Akaike H. A new look at the statistical model identification. IEEE Trans Autom Contr 1974, 19:716-723.
    • (1974) IEEE Trans Autom Contr , vol.19 , pp. 716-723
    • Akaike, H.1
  • 101
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • 10.1093/molbev/msn067, 18367465
    • Le SQ, Gascuel O. An improved general amino acid replacement matrix. Mol Biol Evol 2008, 25:1307-1320. 10.1093/molbev/msn067, 18367465.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 102
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • 10.1093/bioinformatics/btl446, 16928733
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690. 10.1093/bioinformatics/btl446, 16928733.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 103
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • 10.1093/bioinformatics/btg180, 12912839
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574. 10.1093/bioinformatics/btg180, 12912839.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 104
    • 33645010410 scopus 로고    scopus 로고
    • AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference
    • Wilgenbusch J, Warren D, Swofford DL. AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. , http://ceb.csit.fsu.edu/awty/
    • Wilgenbusch, J.1    Warren, D.2    Swofford, D.L.3
  • 105
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520, 14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704. 10.1080/10635150390235520, 14530136.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 107
    • 40049112246 scopus 로고    scopus 로고
    • Phyutility: a phyloinformatics tool for trees, alignments and molecular data
    • 10.1093/bioinformatics/btm619, 18227120
    • Smith SA, Dunn CW. Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics 2008, 24:715-716. 10.1093/bioinformatics/btm619, 18227120.
    • (2008) Bioinformatics , vol.24 , pp. 715-716
    • Smith, S.A.1    Dunn, C.W.2
  • 108
    • 0034089338 scopus 로고    scopus 로고
    • Phylogenetic analysis and experimental approaches to study colour vision in vertebrates
    • Yokoyama S. Phylogenetic analysis and experimental approaches to study colour vision in vertebrates. Methods Enzymol 2000, 315:312-325.
    • (2000) Methods Enzymol , vol.315 , pp. 312-325
    • Yokoyama, S.1
  • 109
    • 84873704207 scopus 로고    scopus 로고
    • Xenbase FISH Protocols
    • Xenbase FISH Protocols. , http://www.xenbase.org/xenwiki/index.php/Wholemount_embryo_FISH_/_Double_FISH
  • 110
    • 34247115210 scopus 로고    scopus 로고
    • Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy
    • 10.2144/000112462, 17612299
    • Jekely G, Arendt D. Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy. BioTechniques 2007, 42:751-755. 10.2144/000112462, 17612299.
    • (2007) BioTechniques , vol.42 , pp. 751-755
    • Jekely, G.1    Arendt, D.2
  • 111
    • 3042705822 scopus 로고    scopus 로고
    • Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa)
    • 10.1242/dev.01119, 15128674
    • Martindale MQ, Pang K, Finnerty JR. Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa). Development 2004, 131:2463-2474. 10.1242/dev.01119, 15128674.
    • (2004) Development , vol.131 , pp. 2463-2474
    • Martindale, M.Q.1    Pang, K.2    Finnerty, J.R.3
  • 112
    • 2542546770 scopus 로고    scopus 로고
    • Origins of bilateral symmetry: Hox and dpp expression in a sea anemone
    • 10.1126/science.1091946, 15131263
    • Finnerty J, Pang K, Burton P, Paulson D, Martindale M. Origins of bilateral symmetry: Hox and dpp expression in a sea anemone. Science 2004, 304:1335-1337. 10.1126/science.1091946, 15131263.
    • (2004) Science , vol.304 , pp. 1335-1337
    • Finnerty, J.1    Pang, K.2    Burton, P.3    Paulson, D.4    Martindale, M.5


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