메뉴 건너뛰기




Volumn 103, Issue 12, 2012, Pages 2492-2501

Kinetics of the triplex-duplex transition in DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA DIRECTED RNA POLYMERASE; TRIPLEX DNA;

EID: 84871348096     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2012.10.029     Document Type: Article
Times cited : (19)

References (30)
  • 1
    • 33947470407 scopus 로고
    • Formation of a three-stranded polynucleotide molecule
    • G. Felsenfeld, D.R. Davies, and A. Rich Formation of a three-stranded polynucleotide molecule J. Am. Chem. Soc. 79 1957 2023 2024
    • (1957) J. Am. Chem. Soc. , vol.79 , pp. 2023-2024
    • Felsenfeld, G.1    Davies, D.R.2    Rich, A.3
  • 4
    • 0000403995 scopus 로고
    • The crystal and molecular structure of a hydrogen-bonded complex between 1-methylthymine and 9-methyladenine
    • K. Hoogsteen The crystal and molecular structure of a hydrogen-bonded complex between 1-methylthymine and 9-methyladenine Acta Crystallogr. 16 1963 907 916
    • (1963) Acta Crystallogr. , vol.16 , pp. 907-916
    • Hoogsteen, K.1
  • 6
    • 0027281792 scopus 로고
    • Thermodynamic and kinetic studies of DNA triplex formation of an oligohomopyrimidine and a matched duplex by filter binding assay
    • H. Shindo, H. Torigoe, and A. Sarai Thermodynamic and kinetic studies of DNA triplex formation of an oligohomopyrimidine and a matched duplex by filter binding assay Biochemistry 32 1993 8963 8969 (Pubitemid 23268822)
    • (1993) Biochemistry , vol.32 , Issue.34 , pp. 8963-8969
    • Shindo, H.1    Torigoe, H.2    Sarai, A.3
  • 7
    • 0025166762 scopus 로고
    • Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA
    • DOI 10.1021/bi00489a045
    • L.J. Maher 3rd, P.B. Dervan, and B.J. Wold Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA Biochemistry 29 1990 8820 8826 (Pubitemid 20302781)
    • (1990) Biochemistry , vol.29 , Issue.37 , pp. 8820-8826
    • Maher III, L.J.1    Dervan, P.B.2    Wold, B.J.3
  • 8
    • 0026795657 scopus 로고
    • Kinetics and thermodynamics of triple-helix formation: Effects of ionic strength and mismatches
    • M. Rougée, and B. Faucon C. Hélène Kinetics and thermodynamics of triple-helix formation: effects of ionic strength and mismatches Biochemistry 31 1992 9269 9278
    • (1992) Biochemistry , vol.31 , pp. 9269-9278
    • Rougée, M.1    Faucon, B.2    Hélène, C.3
  • 9
    • 0028932681 scopus 로고
    • Kinetic analysis of triple-helix formation by pyrimidine oligodeoxynucleotides and duplex DNA
    • L.E. Xodo Kinetic analysis of triple-helix formation by pyrimidine oligodeoxynucleotides and duplex DNA Eur. J. Biochem. 228 1995 918 926
    • (1995) Eur. J. Biochem. , vol.228 , pp. 918-926
    • Xodo, L.E.1
  • 12
    • 84862812216 scopus 로고    scopus 로고
    • Direct observation of the formation of DNA triplexes by single-molecule FRET measurements
    • I.B. Lee, and J.Y. Lee S.-C. Hong Direct observation of the formation of DNA triplexes by single-molecule FRET measurements Curr. Appl. Phys. 12 2012 1027 1032
    • (2012) Curr. Appl. Phys. , vol.12 , pp. 1027-1032
    • Lee, I.B.1    Lee, J.Y.2    Hong, S.-C.3
  • 13
    • 0026317524 scopus 로고
    • Triple helix structures: Sequence dependence, flexibility and mismatch effects
    • J.S. Sun, and J.L. Mergny C. Hélène Triple helix structures: sequence dependence, flexibility and mismatch effects J. Biomol. Struct. Dyn. 9 1991 411 424
    • (1991) J. Biomol. Struct. Dyn. , vol.9 , pp. 411-424
    • Sun, J.S.1    Mergny, J.L.2    Hélène, C.3
  • 14
    • 0039002201 scopus 로고    scopus 로고
    • Influence of sequence-dependent cytosine protonation and methylation on DNA triplex stability
    • DOI 10.1021/bi992630n
    • D. Leitner, W. Schröder, and K. Weisz Influence of sequence-dependent cytosine protonation and methylation on DNA triplex stability Biochemistry 39 2000 5886 5892 (Pubitemid 30307978)
    • (2000) Biochemistry , vol.39 , Issue.19 , pp. 5886-5892
    • Leitner, D.1    Schroder, W.2    Weisz, K.3
  • 15
    • 10044229576 scopus 로고    scopus 로고
    • Direct observation of the formation of DNA triplexes by single-molecule FRET measurements
    • A.S. Petrov, G. Lamm, and G.R. Pack Direct observation of the formation of DNA triplexes by single-molecule FRET measurements Biophys. J. 87 2004 3954 3973
    • (2004) Biophys. J. , vol.87 , pp. 3954-3973
    • Petrov, A.S.1    Lamm, G.2    Pack, G.R.3
  • 16
    • 3342901652 scopus 로고    scopus 로고
    • a of cytosine on the third strand of triplex DNA: Preliminary poisson-boltzmann calculations
    • a of cytosine on the third strand of triplex DNA: preliminary Poisson-Boltzmann calculations Int. J. Quantum Chem. 70 1998 1177 1184 (Pubitemid 128555511)
    • (1998) International Journal of Quantum Chemistry , vol.70 , Issue.6 , pp. 1177-1184
    • Pack, G.R.1    Wong, L.2    Lamm, G.3
  • 17
    • 0030070444 scopus 로고    scopus 로고
    • Triple helix-forming oligonucleotide corresponding to the polypyrimidine sequence in the rat α1(I) collagen promoter specifically inhibits factor binding and transcription
    • DOI 10.1074/jbc.271.3.1805
    • A. Kovacs, and J.C. Kandala R.V. Guntaka Triple helix-forming oligonucleotide corresponding to the polypyrimidine sequence in the rat α 1(I) collagen promoter specifically inhibits factor binding and transcription J. Biol. Chem. 271 1996 1805 1812 (Pubitemid 26029610)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.3 , pp. 1805-1812
    • Kovacs, A.1    Kandala, J.C.2    Weber, K.T.3    Guntaka, R.V.4
  • 18
    • 0034660695 scopus 로고    scopus 로고
    • The GAA·TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner
    • E. Grabczyk, and K. Usdin The GAA TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner Nucleic Acids Res. 28 2000 2815 2822 (Pubitemid 30488540)
    • (2000) Nucleic Acids Research , vol.28 , Issue.14 , pp. 2815-2822
    • Grabczyk, E.1    Usdin, K.2
  • 20
    • 44449166776 scopus 로고    scopus 로고
    • Single-molecule FRET with total internal reflection microscopy
    • P. Selvin, T. Ha, Cold Spring Harbor Laboratory Cold Spring Harbor, NY
    • C. Joo, and T. Ha Single-molecule FRET with total internal reflection microscopy P. Selvin, T. Ha, Single-Molecule Techniques 2008 Cold Spring Harbor Laboratory Cold Spring Harbor, NY
    • (2008) Single-Molecule Techniques
    • Joo, C.1    Ha, T.2
  • 21
    • 84861892611 scopus 로고    scopus 로고
    • A rule of seven in Watson-Crick base-pairing of mismatched sequences
    • I.I. Cisse, H. Kim, and T. Ha A rule of seven in Watson-Crick base-pairing of mismatched sequences Nat. Struct. Mol. Biol. 19 2012 623 627
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 623-627
    • Cisse, I.I.1    Kim, H.2    Ha, T.3
  • 22
    • 18744407040 scopus 로고    scopus 로고
    • Stretching single stranded DNA, a model polyelectrolyte
    • M.-N. Dessinges, and B. Maier V. Croquette Stretching single stranded DNA, a model polyelectrolyte Phys. Rev. Lett. 89 2002 248102
    • (2002) Phys. Rev. Lett. , vol.89 , pp. 248102
    • Dessinges, M.-N.1    Maier, B.2    Croquette, V.3
  • 23
    • 0017468271 scopus 로고    scopus 로고
    • Polyelectrolytes near the rod limit
    • T. Odijk Polyelectrolytes near the rod limit J. Polymer Sci. 15 1997 477 483
    • (1997) J. Polymer Sci. , vol.15 , pp. 477-483
    • Odijk, T.1
  • 24
    • 33751156715 scopus 로고
    • Stiff chains and filaments under tension
    • T. Odijk Stiff chains and filaments under tension Macromolecules 28 1995 7016 7018
    • (1995) Macromolecules , vol.28 , pp. 7016-7018
    • Odijk, T.1
  • 25
    • 37449034896 scopus 로고    scopus 로고
    • Compressing a rigid filament: Buckling and cyclization
    • DOI 10.1140/epje/i2007-10230-4
    • N.-K. Lee, A. Johner, and S.C. Hong Compressing a rigid filament: buckling and cyclization Eur Phys. J. E Soft Matter 24 2007 229 241 (Pubitemid 50001968)
    • (2007) European Physical Journal E , vol.24 , Issue.3 , pp. 229-241
    • Lee, N.-K.1    Johner, A.2    Hong, S.-C.3
  • 26
    • 0041439722 scopus 로고    scopus 로고
    • Irreversible adsorption from dilute polymer solutions
    • B. O'Shaughnessy, and D. Vavylonis Irreversible adsorption from dilute polymer solutions Eur Phys J E Soft Matter 11 2003 213 230
    • (2003) Eur Phys J e Soft Matter , vol.11 , pp. 213-230
    • O'Shaughnessy, B.1    Vavylonis, D.2
  • 27
    • 21244491635 scopus 로고    scopus 로고
    • Nonequilibrium statistical mechanics of the zero-range process and related models
    • M. Evans, and T. Hanney Nonequilibrium statistical mechanics of the zero-range process and related models J. Phys. Math. Gen. 38 2005 R195 R240
    • (2005) J. Phys. Math. Gen. , vol.38
    • Evans, M.1    Hanney, T.2
  • 30
    • 12944324227 scopus 로고    scopus 로고
    • A ratchet mechanism of transcription elongation and its control
    • DOI 10.1016/j.cell.2004.11.045, PII S0092867404011493
    • G. Bar-Nahum, and V. Epshtein E. Nudler A ratchet mechanism of transcription elongation and its control Cell 120 2005 183 193 (Pubitemid 40174762)
    • (2005) Cell , vol.120 , Issue.2 , pp. 183-193
    • Bar-Nahum, G.1    Epshtein, V.2    Ruckenstein, A.E.3    Rafikov, R.4    Mustaev, A.5    Nudler, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.