Direct observation of the formation of DNA triplexes by single-molecule FRET measurements

Current Applied Physics

Volumn 12, Issue 4, 2012, Pages 1027-1032

  Lee, Il Buem ^a   Lee, Ja Yil ^a   Lee, Nam Kyung ^b   Hong, Seok Cheol ^a,c  

^a Korea University   (South Korea)

^b Sejong University   (South Korea)

^c Korea Institute for Advanced Study   (South Korea)

Author keywords

DNA triplex; H DNA; pH; Single molecule FRET; Strand alignment

Indexed keywords

ANALYTICAL TOOL; CHEMICAL FACTORS; DNA DUPLEXES; DNA STRUCTURE; DNA TRIPLEXES; H-DNA; NEUTRAL PH; PARALLEL ARRANGEMENT; PHYSICAL MECHANISM; SINGLE-MOLECULE; STRUCTURAL ASPECTS;

MOLECULES; PH; PH EFFECTS;

DNA;

EID: 84862812216     PISSN: 15671739     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cap.2011.12.026     Document Type: Article

References (24)

1. J.D. Watson, and F.H.C. Crick Nature 171 1953 737
2. L. Pauling, and R.B. Corey Proc. Natl. Acad. Sci. USA 39 1953 84
3. G. Felsenfeld, D.R. Davies, and A. Rich J. Am. Chem. Soc. 79 1957 2023
4. M.D. Frank-Kamenetskii, and S.M. Mirkin Annu. Rev. Biochem. 64 1995 65
5. K. Hoogsteen Acta Crystallogr. 16 1963 907
6. S. Doronina, and J. Behr Chem. Soc. Rev. 26 1997 63
7. K.M. Vasquez, and P.M. Glazer Q. Rev. Biophys. 35 2002 89
8. T. Ohmichi, Y. Kawamoto, P. Wu, D. Miyoshi, H. Karimata, and N. Sugimoto Biochemistry 44 2005 7125
9. R. Wells FASEB J. 22 2008 1625
10. A. Shchyolkina, O. Borisova, E. Minyat, E. Timofeev, I. Il'icheva, E. Khomyakova, and V. Florentiev FEBS Lett. 367 1995 81
11. J. Hanvey, M. Shimizu, and R. Wells Proc. Natl. Acad. Sci. USA 85 1988 6292
12. L. Xodo, G. Manzini, and F. Quadrifoglio Nucleic Acids Res. 18 1990 3557
13. A. Shchyolkina, E. Timofeev, Y. Lysov, V. Florentiev, T. Jovin, and D.J. Arndt-Jovin Nucleic Acids Res. 29 2001 986
14. C. Joo, and T. Ha Single-molecule FRET with total internal reflection microscopy T. Ha, P. Selvin, Single-molecule Technique 2008 Cold Spring Harbor Laboratory Press New York 3 36
15. T. Förster Delocalized excitation and excitation transfer O. Sinanoglu, Modern Quantum Chemistry 1965 Academic Press New York 93 137
16. T. Ha, T. Enderle, D. Ogletree, D. Chemla, P. Selvin, and S. Weiss Proc. Natl. Acad. Sci. USA 93 1996 6264
17. C. Joo, H. Balci, Y. Ishitsuka, C. Buranachai, and T. Ha Annu. Rev. Biochem. 77 2008 51
18. R. Roy, S. Hohng, and T. Ha Nat. Methods 5 2008 507
19. M. Lee, S.H. Kim, and S.-C. Hong Proc. Natl. Acad. Sci. USA 107 2010 4985
20. S. E. Kim, I. B. Lee, S.-C. Hong, Bull. Korean Chem. Soc., in press.
21. P.O.P. T'so Basic Principles in Nucleic Acid Chemistry 1974 Academic Press New York
22. P. Beal, and P. Dervan Science 251 1991 1360
23. P. Wu, Y. Kawamoto, H. Hara, and N. Sugimoto J. Inorg. Biochem. 91 2002 277
24. A.S. Petrov, G. Lamm, and G.R. Pack Biophys. J. 87 2004 3954