pKa of cytosine on the third strand of triplex DNA: Preliminary poisson-boltzmann calculations

International Journal of Quantum Chemistry

Volumn 70, Issue 6, 1998, Pages 1177-1184

  Pack, George R ^a   Wong, Linda ^a,b   Lamm, Gene ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b Utah   (United States)

Author keywords

Acid dissociation constant; Dielectric constant; pka shift; Triple helix

Indexed keywords

EID: 3342901652     PISSN: 00207608     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-461X(1998)70:6<1177::AID-QUA7>3.0.CO;2-X     Document Type: Article

References (27)

1. G. E. Plum, D. S. Pilch, S. F. Singleton, and K. J. Breslauer, Annu. Rev. Biphys. Biomol. Struct. 24, 319 (1995).
2. S. Arnott and E. Selsing, J. Mol. Biol. 88, 500 (1974).
3. P. O. P. T'so, Basic Principles in Nucleic Acid Chemistry (Academic, New York, 1974).
4. L. E. Xodo, G. Manzini, f. Quadrifoglio, G. A. van der Marel, and J. H. van Boom, Nucl. Acids Res. 19, 5625 (1991).
5. P. L. Husler and H. H. Klump, Arch. Biochem. Biophys. 317, 46 (1995).
6. D. E. Callahan, T. L. Trapane, P. S. Miller, P. O. P. T'so, and L.-S. Kan, Biochemistry, 30, 1650 (1991).
7. S. F. Singleton and P. B. Dervan, Biochemistry 31, 10995 (1992).
8. L. Lavelle and J. R. Fesco, Nucl. Acids. Res. 23, 2692 (1995).
9. C. Tanford and J. G. Kirkwood, J. Am. Chem. Soc. 79, 5333 (1957).
10. N. K. Rogers, G. R. Moore, and M. J. E. Sternberg, J. Mol. Biol. 182, 613 (1985).
11. J. Warwicker and H. C. Watson, J. Mol. Biol. 157, 671 (1982).
12. M. J. E. Sternberg, F. R. F. Hayes, A. J. Russell, P. G. Thomas, and A. R. Fersht, Nature 330, 86 (1987).
13. M. K. Gilson and B. H. Honig, Proteins 3, 32 (1988).
14. D. Bashford and M. Karplus, Biochemistry 29, 10219 (1990).
15. H. Oberoi and N. M. Allewell, Biophys. J. 65, 48 (1993).
16. R. V. Sampogna and B. Honig, Biophys. J. 66, 1341 (1994).
17. A. Warshel, Computer Modeling of Chemistry Reactions in Enzymes and Solutions (Wiley-Interscience, New York, 1991).
18. A. Warshel and J. Aqvist, Annu. Rev. Biophys. Biophys. Chem. 20, 267 (1991).
19. E. Demchuk and R. C. Wade, J. Phys. Chem. 100, 17373 (1996).
20. J. Antosiewicz, J. A. McCammon, and M. K. Gilson, J. Mol. Biol. 238, 415 (1994).
21. M. Schaefer, M. Sommer, and M. Karplus, J. Phys. Chem. B 101, 1663 (1997).
22. L. Yang, S. Weerasinghe, P. E. Smith, and B. M. Pettitt, Biophys. J. 69, 1519 (1995).
23. G. Lamm and G. R. Pack, J. Phys. Chem. B. 101, 959 (1997).
24. G. Lamm and G. R. Pack, Proc. Natl. Acad. Sci. USA 87, 9033 (1990).
25. G. R. Pack, G. A. Garrett, L. Wong, and G. Lamm, Biophys. J. 65, 1363 (1993).
26. S. Hanlon, L. Wong, and G. R. Pack, Biophys. J. 72, 291 (1997).
27. S. Arnott, P. J. Bond, E. Selsing, and P. J. Smith, Nucl. Acids Res. 3, 2459 (1976).