Incorporating movement patterns to improve survival estimates for juvenile bull trout

North American Journal of Fisheries Management

Volumn 32, Issue 6, 2012, Pages 1123-1136

  Bowerman, Tracy ^a   Budy, Phaedra ^a  

^a UTAH STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BASELINE CONDITIONS; DEVELOPMENTAL STAGE; ENDANGERED SPECIES; GROWTH RATE; JUVENILE; MARK-RECAPTURE METHOD; MIGRATION; MOVEMENT; PERFORMANCE ASSESSMENT; POPULATION MODELING; REARING; RETURN MIGRATION; SALMONID; SITE FIDELITY; SURVIVAL;

PACIFIC NORTHWEST;

SALMONIDAE; SALVELINUS CONFLUENTUS;

EID: 84871259212     PISSN: 02755947     EISSN: 15488675     Source Type: Journal    
DOI: 10.1080/02755947.2012.720644     Document Type: Article

References (63)

1. Al-Chokhachy, R. 2006. An assessment of the dynamics and limiting factors of a fluvial bull trout population. Doctoral dissertation. Utah State University, Logan.
2. Al-Chokhachy, R., and P. Budy. 2008. Demographic characteristics, population structure, and vital rates of a fluvial population of bull trout in Oregon. Transactions of the American Fisheries Society 137:1709-1722.
3. Al-Chokhachy, R., P. Budy, and M. Conner. 2009. Detecting declines in the abundance of a bull trout (Salvelinus confluentus) population: understanding the accuracy, precision, and costs of our efforts. Canadian Journal of Fisheries and Aquatic Sciences 66:649-658.
4. Anglin, D. R., D. Gallion, M. Barrows, R. Koch, and C. Newlon. 2009. Monitoring the use of the mainstem Columbia River by bull trout from the Walla Walla basin. U.S. Fish and Wildlife Service, Columbia River Fisheries Program Office, Final Report to the U.S. Army Corps of Engineers, Vancouver, Washington.
5. Bahr, M. A., and J. M. Shrimpton. 2004. Spatial and quantitative patterns of movement in large bull trout (Salvelinus confluentus) from a watershed in north-western British Columbia, Canada, are due to habitat selection and not differences in life history. Ecology of Freshwater Fish 13:294-304.
6. Barker, R. J. 1997. Joint modeling of live-recapture, tag-resight, and tag-recovery data. Biometrics 53:666-677.
7. Barker, R. J., K. P. Burnham, and G. C. White. 2004. Encounter history modeling of joint mark-recapture, tag-resighting and tag-recovery data under temporary emigration. Statistica Sinica 14:1037-1055.
8. Barker, R. J., and L. Kavalieris. 2001. Efficiency gain from auxiliary data requiring additional nuisance parameters. Biometrics 57:563-566.
9. Barker, R. J., and G. C. White. 2001. Joint analysis of live and dead encounters of marked animals. Pages 361-367 in R. Field, R. J.Warren, H. Okarma, and P. R. Sievert, editors. Wildlife, land, and people: priorities for the 21st century: proceedings of the second international wildlife management congress. The Wildlife Society, Bethesda, Maryland.
10. Bradford, M. J. 1995. Comparative review of Pacific salmon survival rates. Canadian Journal of Fisheries and Aquatic Sciences 52:1327-1338.
11. Budy, P., L. B. Tennant, T. Bowerman, and G. P. Thiede. 2011. Bull trout population assessment in northeastern Oregon: a template for recovery planning: 2010 annual progress report to U.S. Fish and Wildlife Service. Utah Cooperative Fish and Wildlife Research Unit, UTCFWRU 2011:1-90, Logan.
12. Burnham, K. P., and D. R. Anderson. 2002. Model selection and multimodel inference: a practical information-theoretic approach, 2nd edition. Springer, New York.
13. Buzby, K. M., and L. A. Deegan. 2004. Long-term survival of adult Arctic grayling (Thymallus arcticus) in the Kuparuk River, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 61:1954-1964.
14. Caswell, H. 2001. Matrix population models: construction, analysis, and interpretation, 2nd edition. Sinauer Associates, Sunderland, Massachusetts.
15. Cilimburg, A. B., M. S. Lindberg, J. J. Tewksbury, and S. J. Hejl. 2002. Effects of dispersal on survival probability of adult yellow warblers (Dendroica petechia). Auk 119:778-789.
16. Collins, C. T., and P. F. Doherty Jr. 2006. Survival estimates for royal terns in southern California. Journal of Field Ornithology 77:310-314.
17. Cormack, R.M. 1964. Estimates of survival from the sighting ofmarked animals. Biometrika 51:429-438.
18. Cucherousset, J., J. M. Roussel, R. Keeler, R. A. Cunjak, and R. Stump. 2005. The use of two new portable 12-mm PIT tag detectors to track small fish in shallow streams. North American Journal of Fisheries Management 25:270-274.
19. Fraley, J. J., and B. B. Shepard. 1989. Life-history, ecology and population status of migratory bull trout (Salvelinus confluentus) in the Flathead Lake and River system, Montana. Northwest Science 63:133-143.
20. Gries, G., and B. H. Letcher. 2002. Tag retention and survival of age-0 Atlantic salmon following surgical implantation with passive integrated transponder tags. North American Journal of Fisheries Management 22:219-222.
21. Gross, K., W. F. Morris, M. S. Wolosin, and D. F. Doak. 2006. Modeling vital rates improves estimation of population projection matrices. Population Ecology 48:79-89.
22. Hilborn, R., T. P. Quinn, D. E. Schindler, and D. E. Rogers. 2003. Biocomplexity and fisheries sustainability. Proceedings of the National Academy of Sciences of the USA 100:6564-6568.
23. Hogen, D. M., and D. L. Scarnecchia. 2006. Distinct fluvial and adfluvial migration patterns of a relict charr, Salvelinus confluentus, stock in a mountainous watershed, Idaho, USA. Ecology of Freshwater Fish 15:376-387.
24. Homel, K., and P. Budy. 2008. Temporal and spatial variability in the migration patterns of juvenile and subadult bull trout in northeastern Oregon. Transactions of the American Fisheries Society 137:869-880.
25. Homel, K., P. Budy, M. E. Pfrender, T. A. Whitesel, and K. Mock. 2008. Evaluating genetic structure among resident and migratory forms of bull trout (Salvelinus confluentus) in northeast Oregon. Ecology of Freshwater Fish 17:465-474.
26. Horton, G. E., and B. H. Letcher. 2008. Movement patterns and study area boundaries: influences on survival estimation in capture-mark-recapture studies. Oikos 117:1131-1142.
27. Horton, G. E., B. H. Letcher, and W. L. Kendall. 2011. A multistate capture-recapture modeling strategy to separate true survival from permanent emigration for a passive integrated transponder tagged population of stream fish. Transactions of the American Fisheries Society 140:320-333.
28. Houde, E. D. 1994. Differences between marine and freshwater fish larvae: implications for recruitment. ICES Journal of Marine Science 51:91-97.
29. Isely, J. J., and T. B. Grabowski. 2007. Age and growth. Pages 187-228 in C. S. Guy and M. L. Brown, editors. Analysis and interpretation of freshwater fisheries data. American Fisheries Society, Bethesda, Maryland.
30. Johnston, F. D., and J. R. Post. 2009. Density-dependent life-history compensation of an iteroparous salmonid. Ecological Applications 19:449-467.
31. Johnston, F. D., J. R. Post, C. J. Mushens, J. D. Stelfox, A. J. Paul, and B. Lajeunesse. 2007. The demography of recovery of an overexploited bull trout, Salvelinus confluentus, population. Canadian Journal of Fisheries and Aquatic Sciences 64:113-126.
32. Jolly, G. M. 1965. Explicit estimates from capture-recapture data with both death and immigration-stochastic model. Biometrika 52:225-247.
33. Keeler, R. A., A. R. Breton, D. P. Peterson, and R. A. Cunjak. 2007. Apparent survival and detection estimates for PIT-tagged slimy sculpin in five small New Brunswick streams. Transactions of the American Fisheries Society 136:281-292.
34. Knudsen, C. M., M. V. Johnston, S. L. Schroder, W. J. Bosch, D. E. Fast, and C. R. Strom. 2009. Effects of passive integrated transponder tags on smoltto-adult recruit survival, growth, and behavior of hatchery spring Chinook salmon. North American Journal of Fisheries Management 29:658-669.
35. Lebreton, J. D., K. P. Burnham, J. Clobert, and D. R. Anderson. 1992. Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies. Ecological Monographs 62:67-118.
36. Letcher, B. H., G. Gries, and F. Juanes. 2002. Survival of stream-dwelling Atlantic salmon: effects of life history variation, season, and age. Transactions of the American Fisheries Society 131:838-854.
37. Lorenzen, K. 2006. Population management in fisheries enhancement: gaining key information from release experiments through use of a size-dependent mortality model. Fisheries Research 80:19-27.
38. Martin, T. E., J. Clobert, and D. R. Anderson. 1995. Return rates in studies of life history evolution: are biases large? Journal of Applied Statistics 22:863-876.
39. McPhail, J. D., and J. S. Baxter. 1996. A review of bull trout (Salvelinus confluentus) life-history and habitat use in relation to compensation and improvement opportunities. British Columbia Ministry of Environment, Lands and Parks, Fisheries Branch, Fisheries Management Report 104, Victoria.
40. Meka, J. M., E. E. Knudsen, D. C. Douglas, and R. B. Benter. 2003. Variable migratory patterns of different adult rainbow trout life history types in a southwest Alaska watershed. Transactions of the American Fisheries Society 132:717-732.
41. Monnot, L., J. B. Dunham, T. Hoem, and P. Koetsier. 2008. Influences of body size and environmental factors on autumn downstream migration of bull trout in the Boise River, Idaho. North American Journal of Fisheries Management 28:231-240.
42. Morris, W. F., and D. F. Doak. 2003. Quantitative conservation biology: theory and practice of population viability analysis. Sinauer Associates, Sunderland, Massachusetts.
43. Muir, W. D., S. G. Smith, J. G. Williams, E. E. Hockersmith, and J. R. Skalski. 2001. Survival estimates for migrant yearling Chinook salmon and steelhead tagged with passive integrated transponders in the lower Snake and lower Columbia rivers, 1993-1998. North American Journal of Fisheries Management 21:269-282.
44. Oliver, G. G. 1979. A final report on the present fisheries use of the Wigwam River with an emphasis on the migration, life-history and spawning behaviour of DollyVarden char, Salvelinus malma(Walbaum). BritishColumbia Ministry of Environment, Lands and Parks, Fish and Wildlife Branch, Cranbrook.
45. Olofsson, H., J. Ripa, and N. Jonzen. 2009. Bet-hedging as an evolutionary game: the trade-off between egg size and number. Proceedings of the Royal Society London B 276:2963-2969.
46. Ombredane, D., J. L. Bagliniere, and F. Marchand. 1998. The effects of passive integrated transponder tags on survival and growth of juvenile brown trout (Salmo trutta L.) and their use for studying movement in a small river. Hydrobiologia 371/372:99-106.
47. Paul, A. J., J. R. Post, G. L. Sterling, and C Hunt. 2000. Density-dependent intercohort interactions and recruitment dynamics:models and a bull trout (Salvelinus confluentus) time series. Canadian Journal of Fisheries and Aquatic Sciences 57:1220-1231.
48. Petty, J. T., P. J. Lamothe, and P. M. Mazik. 2005. Spatial and seasonal dynamics of brook trout populations inhabiting a central Appalachian watershed. Transactions of the American Fisheries Society 134:572-587.
49. Prentice, E. F., T. A. Flagg, and C. S. McCutcheon. 1990. Feasibility of using implantable passive integrated transponder (PIT) tags in salmonids. Pages 317-322 in N. C. Parker, A. E. Giorgi, R. C. Heidinger, D. B. Jester Jr., E. D. Prince, and G. A. Winans, editors. Fish-marking techniques. American Fisheries Society, Symposium 7, Bethesda, Maryland.
50. Ratliff, D. E. 1992. Bull trout investigations in the Metolius River-Lake Billy Chinook system. Pages 37-44 in P. J. Howell and D. V. Buchanan, editors. Proceedings of the Gearhart Mountain bull trout workshop. American Fisheries Society, Oregon Chapter, Corvallis.
51. Rieman, B. E., and J. D. McIntyre. 1993. Demographic and habitat requirements for conservation of bull trout. U.S. Forest Service General Technical Report INT-302.
52. Rodriguez, M. A. 2002. Restricted movement in stream fish: the paradigm is incomplete, not lost. Ecology 83:1-13.
53. Roussel, J. M., A. Haro, and R. A. Cunjak. 2000. Field test of a new method for tracking small fishes in shallow rivers using passive integrated transponder (PIT) technology. Canadian Journal of Fisheries and Aquatic Sciences 57:1326-1329.
54. Sandercock, B. K. 2006. Estimation of demographic parameters from liveencounter data: a summary review. Journal ofWildlife Management 70:1504-1520.
55. Seber, G. A. F. 1965. A note on the multiple-recapture census. Biometrika 52:249-259.
56. Selong, J. H., T. E. McMahon, A. V. Zale, and F. T. Barrows. 2001. Effect of temperature on growth and survival of bull trout, with application of an improved method for determining thermal tolerance in fishes. Transactions of the American Fisheries Society 130:1026-1037.
57. Slattery, S. M., and R. T. Alisauskas. 2002. Use of the Barker model in an experiment examining covariate effects on first-year survival in Ross's geese (Chen rossii): a case study. Journal of pplied Statistics 29:497-508.
58. Swanberg, T. R. 1997. Movements of and habitat use by fluvial bull trout in the Blackfoot River, Montana. Transactions of the American Fisheries Society 126:735-746.
59. Trotter, P. C. 1989. Coastal cutthroat trout: a life history compendium. Transactions of the American Fisheries Society 118:463-473.
60. Watry, C. B., and D. L. Scarnecchia. 2008. Adfluvial and fluvial life history variations and migratory patterns of a relict charr, Salvelinus confluentus, stock in west-central Idaho, USA. Ecology of Freshwater Fish 17:231-243.
61. White, G. C., and K. P. Burnham. 1999. Program MARK: survival estimation from populations of marked animals. Bird Study 46:120-139.
62. Williams, B. K., J. D. Nichols, and M. J. Conroy. 2002. Analysis and management of animal populations. Academic Press, San Diego, California.
63. Zydlewski, G. B., G. Horton, T. Dubreuil, B. Letcher, S. Casey, and J. Zydlewski. 2006. Remote monitoring of fish in small streams: a unified approach using PIT tags. Fisheries 31:492-502.