-
1
-
-
47549087897
-
Towards environmental systems biology of Shewanella
-
Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, et al. (2008) Towards environmental systems biology of Shewanella. Nat Rev Micro 6: 592-603.
-
(2008)
Nat Rev Micro
, vol.6
, pp. 592-603
-
-
Fredrickson, J.K.1
Romine, M.F.2
Beliaev, A.S.3
Auchtung, J.M.4
Driscoll, M.E.5
-
2
-
-
0036842611
-
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
-
Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, et al. (2002) Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol 20: 1118-1123.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 1118-1123
-
-
Heidelberg, J.F.1
Paulsen, I.T.2
Nelson, K.E.3
Gaidos, E.J.4
Nelson, W.C.5
-
3
-
-
33846260120
-
Respiratory nitrate ammonification by Shewanella oneidensis MR-1
-
Cruz-Garcia C, Murray AE, Klappenbach JA, Stewart V, Tiedje JM, (2007) Respiratory nitrate ammonification by Shewanella oneidensis MR-1. J Bacteriol 189: 656-662.
-
(2007)
J Bacteriol
, vol.189
, pp. 656-662
-
-
Cruz-Garcia, C.1
Murray, A.E.2
Klappenbach, J.A.3
Stewart, V.4
Tiedje, J.M.5
-
4
-
-
68649102262
-
Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA
-
Gao H, Yang ZK, Barua S, Reed SB, Romine MF, et al. (2009) Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. ISME J 3: 966-976.
-
(2009)
ISME J
, vol.3
, pp. 966-976
-
-
Gao, H.1
Yang, Z.K.2
Barua, S.3
Reed, S.B.4
Romine, M.F.5
-
5
-
-
0036175410
-
Reconstitution of the trimethylamine oxide reductase regulatory elements of Shewanella oneidensis in Escherichia coli
-
Gon S, Patte JC, Dos Santos JP, Méjean V, (2002) Reconstitution of the trimethylamine oxide reductase regulatory elements of Shewanella oneidensis in Escherichia coli. J Bacteriol 184: 1262-1269.
-
(2002)
J Bacteriol
, vol.184
, pp. 1262-1269
-
-
Gon, S.1
Patte, J.C.2
Dos Santos, J.P.3
Méjean, V.4
-
6
-
-
33645224039
-
Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1
-
Gralnick JA, Vali H, Lies DP, Newman DK, (2006) Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1. Proc Natl Acad Sci USA 103: 4669-4674.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4669-4674
-
-
Gralnick, J.A.1
Vali, H.2
Lies, D.P.3
Newman, D.K.4
-
7
-
-
0041927962
-
Identification of the gene encoding the sole physiological fumarate reductase in Shewanella oneidensis MR-1
-
Maier TM, Myers JM, Myers CR, (2003) Identification of the gene encoding the sole physiological fumarate reductase in Shewanella oneidensis MR-1. J Basic Microbiol 43: 312-327.
-
(2003)
J Basic Microbiol
, vol.43
, pp. 312-327
-
-
Maier, T.M.1
Myers, J.M.2
Myers, C.R.3
-
8
-
-
32544451343
-
Evolution of the soluble nitrate reductase: defining the monomeric periplasmic nitrate reductase subgroup
-
Jepson BJN, Marietou A, Mohan S, Cole JA, Butler CS, et al. (2006) Evolution of the soluble nitrate reductase: defining the monomeric periplasmic nitrate reductase subgroup. Biochem Soc Trans 34: 122-126.
-
(2006)
Biochem Soc Trans
, vol.34
, pp. 122-126
-
-
Jepson, B.J.N.1
Marietou, A.2
Mohan, S.3
Cole, J.A.4
Butler, C.S.5
-
9
-
-
76449102157
-
The periplasmic nitrate reductase in Shewanella: the resolution, distribution and functional implications of two NAP isoforms, NapEDABC and NapDAGHB
-
Simpson PJL, Richardson DJ, Codd R, (2010) The periplasmic nitrate reductase in Shewanella: the resolution, distribution and functional implications of two NAP isoforms, NapEDABC and NapDAGHB. Microbiology 156: 302-312.
-
(2010)
Microbiology
, vol.156
, pp. 302-312
-
-
Simpson, P.J.L.1
Richardson, D.J.2
Codd, R.3
-
10
-
-
79955064482
-
Physiological and evolutionary studies of NAP systems in Shewanella piezotolerans WP3
-
Chen Y, Wang F, Xu J, Mehmood MA, Xiao X, (2011) Physiological and evolutionary studies of NAP systems in Shewanella piezotolerans WP3. ISME J 5: 843-855.
-
(2011)
ISME J
, vol.5
, pp. 843-855
-
-
Chen, Y.1
Wang, F.2
Xu, J.3
Mehmood, M.A.4
Xiao, X.5
-
11
-
-
0035166766
-
The tetraheme cytochrome c NrfH is required to anchor the cytochrome c nitrite reductase (NrfA) in the membrane of Wolinella succinogenes
-
Simon J, Pisa R, Stein T, Eichler R, Klimmek O, et al. (2001) The tetraheme cytochrome c NrfH is required to anchor the cytochrome c nitrite reductase (NrfA) in the membrane of Wolinella succinogenes. Eur J Biochem 268: 5776-5782.
-
(2001)
Eur J Biochem
, vol.268
, pp. 5776-5782
-
-
Simon, J.1
Pisa, R.2
Stein, T.3
Eichler, R.4
Klimmek, O.5
-
12
-
-
0026705854
-
Either of two functionally redundant sensor proteins, NarX and NarQ, is sufficient for nitrate regulation in Escherichia coli K-12
-
Rabin RS, Stewart V, (1992) Either of two functionally redundant sensor proteins, NarX and NarQ, is sufficient for nitrate regulation in Escherichia coli K-12. Proc Natl Acad Sci USA 89: 8419-8423.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 8419-8423
-
-
Rabin, R.S.1
Stewart, V.2
-
13
-
-
0029030757
-
Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: regulation of the regulators
-
Darwin AJ, Stewart V, (1995) Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: regulation of the regulators. J Bacteriol 177: 3865-3869.
-
(1995)
J Bacteriol
, vol.177
, pp. 3865-3869
-
-
Darwin, A.J.1
Stewart, V.2
-
14
-
-
0036274156
-
Independent regulation of the divergent Escherichia coli nrfA and acsP1 promoters by a nucleoprotein assembly at a shared regulatory region
-
Browning DF, Beatty CM, Wolfe AJ, Cole JA, Busby SJW, (2002) Independent regulation of the divergent Escherichia coli nrfA and acsP1 promoters by a nucleoprotein assembly at a shared regulatory region. Mol Microbiol 43: 687-701.
-
(2002)
Mol Microbiol
, vol.43
, pp. 687-701
-
-
Browning, D.F.1
Beatty, C.M.2
Wolfe, A.J.3
Cole, J.A.4
Busby, S.J.W.5
-
15
-
-
0037326468
-
Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria
-
Stewart V, (2003) Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria. Biochem Soc Trans 2003 31: 1-10.
-
(2003)
Biochem Soc Trans 2003
, vol.31
, pp. 1-10
-
-
Stewart, V.1
-
16
-
-
0141727575
-
Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12
-
Stewart V, Bledsoe P, Williams S, (2003) Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. J Bacteriol 185: 5862-5870.
-
(2003)
J Bacteriol
, vol.185
, pp. 5862-5870
-
-
Stewart, V.1
Bledsoe, P.2
Williams, S.3
-
17
-
-
33646184857
-
A Reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth
-
Constantinidou C, Hobman JL, Griffiths L, Patel MD, Penn CW, et al. (2006) A Reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth. J Biol Chem 281: 4802-4815.
-
(2006)
J Biol Chem
, vol.281
, pp. 4802-4815
-
-
Constantinidou, C.1
Hobman, J.L.2
Griffiths, L.3
Patel, M.D.4
Penn, C.W.5
-
18
-
-
78650506427
-
Conserved mechanism for sensor phosphatase control of two-component signaling revealed in the nitrate sensor NarX
-
Huynh TN, Noriega CE, Stewart V, (2010) Conserved mechanism for sensor phosphatase control of two-component signaling revealed in the nitrate sensor NarX. Proc Natl Acad Sci USA 107: 21140-21145.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 21140-21145
-
-
Huynh, T.N.1
Noriega, C.E.2
Stewart, V.3
-
19
-
-
74349106185
-
Asymmetric cross-regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12
-
Noriega CE, Lin HY, Chen LL, Williams SB, Stewart V, (2010) Asymmetric cross-regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12. Mol Microbiol 75: 394-412.
-
(2010)
Mol Microbiol
, vol.75
, pp. 394-412
-
-
Noriega, C.E.1
Lin, H.Y.2
Chen, L.L.3
Williams, S.B.4
Stewart, V.5
-
20
-
-
0030052038
-
Isolation of an oxygen-sensitive FNR protein of Escherichia coli: interaction at activator and repressor sites of FNR-controlled genes
-
Melville SB, Gunsalus RP, (1996) Isolation of an oxygen-sensitive FNR protein of Escherichia coli: interaction at activator and repressor sites of FNR-controlled genes. Proc Natl Acad Sci USA 93: 1226-1231.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1226-1231
-
-
Melville, S.B.1
Gunsalus, R.P.2
-
21
-
-
0033639260
-
FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3
-
Lamberg KE, Kiley PJ, (2000) FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3. Mol Microbiol 38: 817-827.
-
(2000)
Mol Microbiol
, vol.38
, pp. 817-827
-
-
Lamberg, K.E.1
Kiley, P.J.2
-
22
-
-
1842557558
-
Transcription activation by remodelling of a nucleoprotein assembly: the role of NarL at the FNR-dependent Escherichia coli nir promoter
-
Browning DF, Cole JA, Busby SJW, (2004) Transcription activation by remodelling of a nucleoprotein assembly: the role of NarL at the FNR-dependent Escherichia coli nir promoter. Mol Microbiol 53: 203-215.
-
(2004)
Mol Microbiol
, vol.53
, pp. 203-215
-
-
Browning, D.F.1
Cole, J.A.2
Busby, S.J.W.3
-
23
-
-
1542364538
-
Mechanism of oxygen sensing by the bacterial transcription factor fumarate-nitrate reduction (FNR)
-
Crack J, Green J, Thomson A, (2004) Mechanism of oxygen sensing by the bacterial transcription factor fumarate-nitrate reduction (FNR). J Biol Chem 279: 9278-9286.
-
(2004)
J Biol Chem
, vol.279
, pp. 9278-9286
-
-
Crack, J.1
Green, J.2
Thomson, A.3
-
25
-
-
0031856846
-
Fnr, NarP, and NarL regulation of E. coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro
-
Darwin A, Ziegelhoffer E, Kiley P, Stewart V, (1998) Fnr, NarP, and NarL regulation of E. coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro. J Bacteriol 180: 4192-4198.
-
(1998)
J Bacteriol
, vol.180
, pp. 4192-4198
-
-
Darwin, A.1
Ziegelhoffer, E.2
Kiley, P.3
Stewart, V.4
-
26
-
-
0033814304
-
The nrfA and nirB nitrite reductase operons in Escherichia coli are expressed differently in response to nitrate than to nitrite
-
Wang H, Gunsalus RP, (2000) The nrfA and nirB nitrite reductase operons in Escherichia coli are expressed differently in response to nitrate than to nitrite. J Bacteriol 182: 5813-5822.
-
(2000)
J Bacteriol
, vol.182
, pp. 5813-5822
-
-
Wang, H.1
Gunsalus, R.P.2
-
27
-
-
44449112421
-
Specificity in two-component signal transduction pathways
-
Laub MT, Goulian M, (2007) Specificity in two-component signal transduction pathways. Annu Rev Genetics 41: 121-145.
-
(2007)
Annu Rev Genetics
, vol.41
, pp. 121-145
-
-
Laub, M.T.1
Goulian, M.2
-
28
-
-
0034900650
-
Isolation and Characterization of a Shewanella putrefaciens MR-1 Electron Transport Regulator etrA Mutant: Reassessment of the Role of EtrA
-
Maier TM, Myers CR, (2001) Isolation and Characterization of a Shewanella putrefaciens MR-1 Electron Transport Regulator etrA Mutant: Reassessment of the Role of EtrA. J Bacteriol 183: 4918-4926.
-
(2001)
J Bacteriol
, vol.183
, pp. 4918-4926
-
-
Maier, T.M.1
Myers, C.R.2
-
29
-
-
79953115195
-
Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1
-
Cruz-Garcia C, Murray A, Rodrigues J, Gralnick J, McCue L, et al. (2011) Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1. BMC Microbiology 11: 64.
-
(2011)
BMC Microbiology
, vol.11
, pp. 64
-
-
Cruz-Garcia, C.1
Murray, A.2
Rodrigues, J.3
Gralnick, J.4
McCue, L.5
-
30
-
-
0037608789
-
Involvement of cyclic AMP (cAMP) and cAMP receptor protein in anaerobic respiration of Shewanella oneidensis
-
Saffarini D, Schultz R, Beliaev A, (2003) Involvement of cyclic AMP (cAMP) and cAMP receptor protein in anaerobic respiration of Shewanella oneidensis. J Bacteriol 185: 3668-3671.
-
(2003)
J Bacteriol
, vol.185
, pp. 3668-3671
-
-
Saffarini, D.1
Schultz, R.2
Beliaev, A.3
-
31
-
-
67649392523
-
Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1
-
Charania M, Brockman K, Zhang Y, Banerjee A, Pinchuk G, et al. (2009) Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1. J Bacteriol 191: 4298-4306.
-
(2009)
J Bacteriol
, vol.191
, pp. 4298-4306
-
-
Charania, M.1
Brockman, K.2
Zhang, Y.3
Banerjee, A.4
Pinchuk, G.5
-
32
-
-
43349098727
-
The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression
-
Elias D, Tollaksen S, Kennedy D, Mottaz H, Giometti C, et al. (2008) The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression. Arch Microbiol 189: 313-324.
-
(2008)
Arch Microbiol
, vol.189
, pp. 313-324
-
-
Elias, D.1
Tollaksen, S.2
Kennedy, D.3
Mottaz, H.4
Giometti, C.5
-
33
-
-
40249116849
-
Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses
-
Gao H, Wang X, Yang Z, Palzkill T, Zhou J, (2008) Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses. BMC Genomics 9: 42.
-
(2008)
BMC Genomics
, vol.9
, pp. 42
-
-
Gao, H.1
Wang, X.2
Yang, Z.3
Palzkill, T.4
Zhou, J.5
-
34
-
-
78650801252
-
Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis
-
Gao H, Wang X, Yang ZK, Chen J, Liang Y, et al. (2010) Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis. PLoS ONE 5: e15295.
-
(2010)
PLoS ONE
, vol.5
-
-
Gao, H.1
Wang, X.2
Yang, Z.K.3
Chen, J.4
Liang, Y.5
-
35
-
-
79959388113
-
Genetic and molecular characterization of flagellar assembly in Shewanella oneidensis
-
Wu L, Wang J, Tang P, Chen H, Gao H, (2011) Genetic and molecular characterization of flagellar assembly in Shewanella oneidensis. PLoS ONE 6: e21479.
-
(2011)
PLoS ONE
, vol.6
-
-
Wu, L.1
Wang, J.2
Tang, P.3
Chen, H.4
Gao, H.5
-
36
-
-
80052621553
-
Analysis of the BarA/UvrY Two-Component System in Shewanella oneidensis MR-1
-
Binnenkade L, Lassak J, Thormann KM, (2011) Analysis of the BarA/UvrY Two-Component System in Shewanella oneidensis MR-1. PLoS ONE 6: e23440.
-
(2011)
PLoS ONE
, vol.6
-
-
Binnenkade, L.1
Lassak, J.2
Thormann, K.M.3
-
37
-
-
52149105409
-
Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display
-
Gao H, Pattison D, Yan T, Klingeman DM, Wang X, et al. (2008) Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display. PLoS ONE 3: e2983.
-
(2008)
PLoS ONE
, vol.3
-
-
Gao, H.1
Pattison, D.2
Yan, T.3
Klingeman, D.M.4
Wang, X.5
-
38
-
-
19944373776
-
Anaerobic regulation by an atypical Arc system in Shewanella oneidensis
-
Gralnick JA, Brown CT, Newman DK, (2005) Anaerobic regulation by an atypical Arc system in Shewanella oneidensis. Mol Microbiol 56: 1347-1357.
-
(2005)
Mol Microbiol
, vol.56
, pp. 1347-1357
-
-
Gralnick, J.A.1
Brown, C.T.2
Newman, D.K.3
-
39
-
-
63449141265
-
Catabolite Repression Control of napF (Periplasmic Nitrate Reductase) Operon Expression in Escherichia coli K-12
-
Stewart V, Bledsoe PJ, Chen LL, Cai A, (2009) Catabolite Repression Control of napF (Periplasmic Nitrate Reductase) Operon Expression in Escherichia coli K-12. J Bacteriol 191: 996-1005.
-
(2009)
J Bacteriol
, vol.191
, pp. 996-1005
-
-
Stewart, V.1
Bledsoe, P.J.2
Chen, L.L.3
Cai, A.4
-
40
-
-
0025101633
-
Isolation of intact FNR protein (Mr 30 000) of Escherichia coli
-
Trageser M, Spiro S, Duchêne A, Kojro E, Fahrenholz F, et al. (1990) Isolation of intact FNR protein (Mr 30 000) of Escherichia coli. Mol Microbiol 4: 21-27.
-
(1990)
Mol Microbiol
, vol.4
, pp. 21-27
-
-
Trageser, M.1
Spiro, S.2
Duchêne, A.3
Kojro, E.4
Fahrenholz, F.5
-
41
-
-
67650465602
-
Unexpected chemoreceptors mediate energy taxis towards electron acceptors in Shewanella oneidensis
-
Baraquet C, Théraulaz L, Iobbi-Nivol C, Méjean V, Jourlin-Castelli C, (2009) Unexpected chemoreceptors mediate energy taxis towards electron acceptors in Shewanella oneidensis. Mol Microbiol 73: 278-290.
-
(2009)
Mol Microbiol
, vol.73
, pp. 278-290
-
-
Baraquet, C.1
Théraulaz, L.2
Iobbi-Nivol, C.3
Méjean, V.4
Jourlin-Castelli, C.5
-
42
-
-
9444239308
-
Bacterial redox sensors
-
Green J, Paget MS, (2004) Bacterial redox sensors. Nat Rev Micro 2: 954-966.
-
(2004)
Nat Rev Micro
, vol.2
, pp. 954-966
-
-
Green, J.1
Paget, M.S.2
-
43
-
-
0141591471
-
Genetic identification of a respiratory arsenate reductase
-
Saltikov CW, Newman DK, (2003) Genetic identification of a respiratory arsenate reductase. Proc Natl Acad Sci USA 100: 10983-10988.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 10983-10988
-
-
Saltikov, C.W.1
Newman, D.K.2
-
44
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1972)
Experiments in molecular genetics
-
-
Miller, J.H.1
-
45
-
-
80051984859
-
Functional Assessment of EnvZ/OmpR Two-Component System in Shewanella oneidensis PLoS ONE
-
Yuan J, Wei B, Shi M, Gao H, (2011) Functional Assessment of EnvZ/OmpR Two-Component System in Shewanella oneidensis PLoS ONE. 6: e23701.
-
(2011)
, vol.6
-
-
Yuan, J.1
Wei, B.2
Shi, M.3
Gao, H.4
-
46
-
-
0035709008
-
A Rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite
-
Miranda KM, Espey MG, Wink DA, (2001) A Rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite. Oxide 5: 62-71.
-
(2001)
Oxide
, vol.5
, pp. 62-71
-
-
Miranda, K.M.1
Espey, M.G.2
Wink, D.A.3
|