메뉴 건너뛰기




Volumn 3, Issue 8, 2009, Pages 966-976

Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA

Author keywords

NapB; Nitrate; Shewanella

Indexed keywords

BACTERIAL PROTEIN; CYTOCHROME C; CYTOCHROME C(3); NITRATE; NITRATE REDUCTASE; QUATERNARY AMMONIUM DERIVATIVE;

EID: 68649102262     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2009.40     Document Type: Article
Times cited : (123)

References (41)
  • 2
    • 26444521691 scopus 로고    scopus 로고
    • Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors
    • Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM et al. (2005). Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. J Bacteriol 187: 7138-7145.
    • (2005) J Bacteriol , vol.187 , pp. 7138-7145
    • Beliaev, A.S.1    Klingeman, D.M.2    Klappenbach, J.A.3    Wu, L.4    Romine, M.F.5    Tiedje, J.M.6
  • 3
    • 0035875398 scopus 로고    scopus 로고
    • Overproduction, purification and novel redox properties of the dihaem cytochrome c, NapB, from Haemophilus influenzae
    • Brigé A, Cole JA, Hagen WR, Guisez Y, Van Beeumen JJ. (2001). Overproduction, purification and novel redox properties of the dihaem cytochrome c, NapB, from Haemophilus influenzae. Biochem J 356: 851-858.
    • (2001) Biochem J , vol.356 , pp. 851-858
    • Brigé, A.1    Cole, J.A.2    Hagen, W.R.3    Guisez, Y.4    Van Beeumen, J.J.5
  • 4
    • 0036229614 scopus 로고    scopus 로고
    • Roles of NapF, NapG and NapH, subunits of the Escherichia coli periplasmic nitrate reductase, in ubiquinol oxidation
    • Brondijk THC, Fiegen D, Richardson DJ, Cole JA. (2002). Roles of NapF, NapG and NapH, subunits of the Escherichia coli periplasmic nitrate reductase, in ubiquinol oxidation. Mol Microbiol 44: 245-255.
    • (2002) Mol Microbiol , vol.44 , pp. 245-255
    • Brondijk, T.H.C.1    Fiegen, D.2    Richardson, D.J.3    Cole, J.A.4
  • 5
    • 1842833398 scopus 로고    scopus 로고
    • NapGH components of the periplas-mic nitrate reductase of Escherichia coli K-12: Location, topology and physiological roles in quinol oxidation and redox balancing
    • Brondijk THC, Nilavongse A, Filenko N, Richardson DJ, Cole JA. (2004). NapGH components of the periplas-mic nitrate reductase of Escherichia coli K-12: location, topology and physiological roles in quinol oxidation and redox balancing. Biochem J 379: 47-55.
    • (2004) Biochem J , vol.379 , pp. 47-55
    • Brondijk, T.H.C.1    Nilavongse, A.2    Filenko, N.3    Richardson, D.J.4    Cole, J.A.5
  • 8
    • 7744230895 scopus 로고    scopus 로고
    • Global transcriptome analysis of the heat shock response of Shewanella oneidensis
    • Gao H, Wang Y, Liu X, Yan T, Wu L, Alm E et al. (2004). Global transcriptome analysis of the heat shock response of Shewanella oneidensis. J Bacteriol 186: 7796-7803.
    • (2004) J Bacteriol , vol.186 , pp. 7796-7803
    • Gao, H.1    Wang, Y.2    Liu, X.3    Yan, T.4    Wu, L.5    Alm, E.6
  • 9
    • 33745005291 scopus 로고    scopus 로고
    • Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins
    • Gao H, Yang ZK, Wu L, Thompson DK, Zhou J. (2006b). Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins. J Bacteriol 188: 4560-4569.
    • (2006) J Bacteriol , vol.188 , pp. 4560-4569
    • Gao, H.1    Yang, Z.K.2    Wu, L.3    Thompson, D.K.4    Zhou, J.5
  • 10
    • 40249116849 scopus 로고    scopus 로고
    • Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses
    • Gao H, Wang X, Yang Z, Palzkill T, Zhou J. (2008). Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses. BMC Genomics 9: 42.
    • (2008) BMC Genomics , vol.9 , pp. 42
    • Gao, H.1    Wang, X.2    Yang, Z.3    Palzkill, T.4    Zhou, J.5
  • 11
    • 33646881270 scopus 로고    scopus 로고
    • Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1
    • Gao W, Liu Y, Giometti C, Tollaksen S, Khare T, Wu L et al. (2006a). Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1. BMC Genomics 7: 76.
    • (2006) BMC Genomics , vol.7 , pp. 76
    • Gao, W.1    Liu, Y.2    Giometti, C.3    Tollaksen, S.4    Khare, T.5    Wu, L.6
  • 13
    • 19944373776 scopus 로고    scopus 로고
    • Anaerobic regulation by an atypical Arc system in Shewanella oneidensis
    • Gralnick JA, Brown CT, Newman DK. (2005). Anaerobic regulation by an atypical Arc system in Shewanella oneidensis. Mol Microbiol 56: 1347-1357.
    • (2005) Mol Microbiol , vol.56 , pp. 1347-1357
    • Gralnick, J.A.1    Brown, C.T.2    Newman, D.K.3
  • 14
    • 33645224039 scopus 로고    scopus 로고
    • Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1
    • Gralnick JA, Vali H, Lies DP, Newman DK. (2006). Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1. Proc Natl Acad Sci USA 103: 4669-4674.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 4669-4674
    • Gralnick, J.A.1    Vali, H.2    Lies, D.P.3    Newman, D.K.4
  • 16
    • 32544451343 scopus 로고    scopus 로고
    • Evolution of the soluble nitrate reductase: Defining the monomeric periplasmic nitrate reductase subgroup
    • Jepson BJN, Marietou A, Mohan S, Cole JA, Butler CS, Richardson DJ et al. (2006). Evolution of the soluble nitrate reductase: defining the monomeric periplasmic nitrate reductase subgroup. Biochem Soc Trans 34(Part 1): 122-126.
    • (2006) Biochem Soc Trans , vol.34 , Issue.PART 1 , pp. 122-126
    • Jepson, B.J.N.1    Marietou, A.2    Mohan, S.3    Cole, J.A.4    Butler, C.S.5    Richardson, D.J.6
  • 17
    • 34249949241 scopus 로고    scopus 로고
    • Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli
    • Jepson BJN, Mohan S, Clarke TA, Gates AJ, Cole JA, Butler CS et al. (2007). Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli. J Biol Chem 282: 6425-6437.
    • (2007) J Biol Chem , vol.282 , pp. 6425-6437
    • Jepson, B.J.N.1    Mohan, S.2    Clarke, T.A.3    Gates, A.J.4    Cole, J.A.5    Butler, C.S.6
  • 18
    • 49249105797 scopus 로고    scopus 로고
    • Characterization of the NapGH quinol dehydrogenase complex involved in Wolinella succinogenes nitrate respiration
    • Kern M, Simon J. (2008). Characterization of the NapGH quinol dehydrogenase complex involved in Wolinella succinogenes nitrate respiration. Mol Microbiol 69: 1137-1152.
    • (2008) Mol Microbiol , vol.69 , pp. 1137-1152
    • Kern, M.1    Simon, J.2
  • 19
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2000 generations
    • Lenski RE, Rose MR, Simpson SC, Tadler SC. (1991). Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2000 generations. Am Nat 138: 1315-1341.
    • (1991) Am Nat , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 21
    • 21744458235 scopus 로고    scopus 로고
    • Nitrate reduction by Desulfovibrio desulfuricans: A periplasmic nitrate reductase system that lacks NapB, but includes a unique tetraheme c-type cytochrome, NapM
    • Marietou A, Richardson D, Cole J, Mohan S. (2005). Nitrate reduction by Desulfovibrio desulfuricans: a periplasmic nitrate reductase system that lacks NapB, but includes a unique tetraheme c-type cytochrome, NapM. FEMS Microbiol Lett 248: 217-225.
    • (2005) FEMS Microbiol Lett , vol.248 , pp. 217-225
    • Marietou, A.1    Richardson, D.2    Cole, J.3    Mohan, S.4
  • 22
    • 1842631445 scopus 로고    scopus 로고
    • Identification of 42 possible cytochrome c genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes
    • Meyer TE, Tsapin AI, Vandenberghe I, De Smet L, Frishman D, Nealson KH et al. (2004). Identification of 42 possible cytochrome c genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes. OMICS 8: 57-77.
    • (2004) OMICS , vol.8 , pp. 57-77
    • Meyer, T.E.1    Tsapin, A.I.2    Vandenberghe, I.3    De Smet, L.4    Frishman, D.5    Nealson, K.H.6
  • 23
    • 0031850575 scopus 로고    scopus 로고
    • Definition and distinction between assimilatory, dissimilatory and respiratory pathways
    • Moreno-Vivian C, Ferguson SJ. (1998). Definition and distinction between assimilatory, dissimilatory and respiratory pathways. Mol Microbiol 29: 664-666.
    • (1998) Mol Microbiol , vol.29 , pp. 664-666
    • Moreno-Vivian, C.1    Ferguson, S.J.2
  • 24
    • 0032704710 scopus 로고    scopus 로고
    • Prokaryotic nitrate reduction: Molecular properties and functional distinction among bacterial nitrate reductases
    • Moreno-Vivian C, Cabello P, Martinez-Luque M, Blasco R, Castillo F. (1999). Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J Bacteriol 181: 6573-6584.
    • (1999) J Bacteriol , vol.181 , pp. 6573-6584
    • Moreno-Vivian, C.1    Cabello, P.2    Martinez-Luque, M.3    Blasco, R.4    Castillo, F.5
  • 25
    • 33947183722 scopus 로고    scopus 로고
    • The cymA gene, encoding a tetraheme c-type cytochrome, is required for arsenate respiration in Shewanella species
    • Murphy JN, Saltikov CW. (2007). The cymA gene, encoding a tetraheme c-type cytochrome, is required for arsenate respiration in Shewanella species. J Bacteriol 189: 2283-2290.
    • (2007) J Bacteriol , vol.189 , pp. 2283-2290
    • Murphy, J.N.1    Saltikov, C.W.2
  • 26
    • 0030903069 scopus 로고    scopus 로고
    • Outer membrane cyto-chromes of Shewanella putrefaciens MR-1: Spectral analysis, and purification of the 83-kDa c-type cytochrome
    • Myers CR, Myers JM. (1997). Outer membrane cyto-chromes of Shewanella putrefaciens MR-1: spectral analysis, and purification of the 83-kDa c-type cytochrome. Biochim Biophys Acta 1326: 307-318.
    • (1997) Biochim Biophys Acta , vol.1326 , pp. 307-318
    • Myers, C.R.1    Myers, J.M.2
  • 27
    • 0033989646 scopus 로고    scopus 로고
    • Role of the tetraheme cytochrome CymA in anaerobic electron transport in cells of Shewanella putrefaciens MR-1 with normal levels of menaquinone
    • Myers JM, Myers CR. (2000). Role of the tetraheme cytochrome CymA in anaerobic electron transport in cells of Shewanella putrefaciens MR-1 with normal levels of menaquinone. J Bacteriol 182: 67-75.
    • (2000) J Bacteriol , vol.182 , pp. 67-75
    • Myers, J.M.1    Myers, C.R.2
  • 28
    • 0034604081 scopus 로고    scopus 로고
    • A role for excreted quinones in extracellular electron transfer
    • Newman DK, Kolter R. (2000). A role for excreted quinones in extracellular electron transfer. Nature 405: 94-97.
    • (2000) Nature , vol.405 , pp. 94-97
    • Newman, D.K.1    Kolter, R.2
  • 29
    • 0033571287 scopus 로고    scopus 로고
    • Essential roles for the products of the napABCD genes, but not napFGH, in periplasmic nitrate reduction by Escherichia coli K-12
    • Potter LC, Cole JA. (1999). Essential roles for the products of the napABCD genes, but not napFGH, in periplasmic nitrate reduction by Escherichia coli K-12. Biochem J 344: 69-76.
    • (1999) Biochem J , vol.344 , pp. 69-76
    • Potter, L.C.1    Cole, J.A.2
  • 31
    • 0034015380 scopus 로고    scopus 로고
    • Bacterial respiration: A flexible process for a changing environment
    • Richardson DJ. (2000). Bacterial respiration: a flexible process for a changing environment. Microbiology 146: 551-571.
    • (2000) Microbiology , vol.146 , pp. 551-571
    • Richardson, D.J.1
  • 33
    • 44249087419 scopus 로고    scopus 로고
    • Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome
    • Romine MF, Carlson TS, Norbeck AD, McCue LA, Lipton MS. (2008). Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome. Appl Environ Microbiol 74: 3257-3265.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3257-3265
    • Romine, M.F.1    Carlson, T.S.2    Norbeck, A.D.3    McCue, L.A.4    Lipton, M.S.5
  • 35
    • 0036670757 scopus 로고    scopus 로고
    • The membrane-bound tetrahaem c-type cytochrome CymA interacts directly with the soluble fumarate reductase in Shewanella
    • Schwalb C, Chapman SK, Reid GA. (2002). The membrane-bound tetrahaem c-type cytochrome CymA interacts directly with the soluble fumarate reductase in Shewanella. Biochem Soc Trans 30: 658-662.
    • (2002) Biochem Soc Trans , vol.30 , pp. 658-662
    • Schwalb, C.1    Chapman, S.K.2    Reid, G.A.3
  • 36
    • 0042572520 scopus 로고    scopus 로고
    • The tetraheme cytochrome CymA is required for anaerobic respiration with dimethyl sulfoxide and nitrite in Shewanella oneidensis
    • Schwalb C, Chapman SK, Reid GA. (2003). The tetraheme cytochrome CymA is required for anaerobic respiration with dimethyl sulfoxide and nitrite in Shewanella oneidensis. Biochemistry 42: 9491-9497.
    • (2003) Biochemistry , vol.42 , pp. 9491-9497
    • Schwalb, C.1    Chapman, S.K.2    Reid, G.A.3
  • 37
    • 0033951291 scopus 로고    scopus 로고
    • A NapC/NirT-type cytochrome c (NrfH) is the mediator between the quinone pool and the cytochrome c nitrite reductase of Wolinella succinogenes
    • Simon J, Gross R, Einsle O, Kroneck PMH, Kroger A, Klimmek O et al. (2000). A NapC/NirT-type cytochrome c (NrfH) is the mediator between the quinone pool and the cytochrome c nitrite reductase of Wolinella succinogenes. Mol Microbiol 35: 686-696.
    • (2000) Mol Microbiol , vol.35 , pp. 686-696
    • Simon, J.1    Gross, R.2    Einsle, O.3    Kroneck, P.M.H.4    Kroger, A.5    Klimmek, O.6
  • 38
    • 0035166766 scopus 로고    scopus 로고
    • The tetraheme cytochrome c NrfH is required to anchor the cytochrome c nitrite reductase (NrfA) in the membrane of Wolinella succinogenes
    • Simon J, Pisa R, Stein T, Eichler R, Klimmek O, Gross R. (2001). The tetraheme cytochrome c NrfH is required to anchor the cytochrome c nitrite reductase (NrfA) in the membrane of Wolinella succinogenes. Eur J Biochem 268: 5776-5782.
    • (2001) Eur J Biochem , vol.268 , pp. 5776-5782
    • Simon, J.1    Pisa, R.2    Stein, T.3    Eichler, R.4    Klimmek, O.5    Gross, R.6
  • 39
    • 0036024581 scopus 로고    scopus 로고
    • Enzymology and bioenergetics of respiratory nitrite ammonification
    • Simon J. (2002). Enzymology and bioenergetics of respiratory nitrite ammonification. FEMS Microbiol Rev 26: 285-309.
    • (2002) FEMS Microbiol Rev , vol.26 , pp. 285-309
    • Simon, J.1
  • 40
    • 27144537725 scopus 로고    scopus 로고
    • Differential regulation of periplasmic nitrate reductase gene (napKEFDABC) expression between aerobiosis and anaerobiosis with nitrate in a denitrifying phototroph Rhodobacter sphaeroides f. sp. denitrificans
    • Tabata A, Yamamoto I, Matsuzaki M, Satoh T. (2005). Differential regulation of periplasmic nitrate reductase gene (napKEFDABC) expression between aerobiosis and anaerobiosis with nitrate in a denitrifying phototroph Rhodobacter sphaeroides f. sp. denitrificans. Arch Microbiol 184: 108-116.
    • (2005) Arch Microbiol , vol.184 , pp. 108-116
    • Tabata, A.1    Yamamoto, I.2    Matsuzaki, M.3    Satoh, T.4
  • 41
    • 0033529707 scopus 로고    scopus 로고
    • Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
    • Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B et al. (1999). Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
    • (1999) Science , vol.285 , pp. 901-906
    • Winzeler, E.A.1    Shoemaker, D.D.2    Astromoff, A.3    Liang, H.4    Anderson, K.5    Andre, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.