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Volumn 37, Issue 1, 2013, Pages 48-59

Extracting Actionable Information From Genome Scans

Author keywords

James Stein; Model selection; Sequencing; Soft threshold; Univariate means estimation

Indexed keywords

ACCURACY; ANALYTICAL ERROR; ARTICLE; GENETIC VARIABILITY; GENOME ANALYSIS; HAPLOTYPE; PHENOTYPE; SEQUENCE ANALYSIS; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; UNIVARIATE ANALYSIS;

EID: 84871101115     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.21682     Document Type: Article
Times cited : (5)

References (45)
  • 1
    • 70149111937 scopus 로고    scopus 로고
    • Unbiased estimation of odds ratios: combining genomewide association scans with replication studies
    • Bowden J, Dudbridge F. 2009. Unbiased estimation of odds ratios: combining genomewide association scans with replication studies. Genet Epidemiol 33:406-418.
    • (2009) Genet Epidemiol , vol.33 , pp. 406-418
    • Bowden, J.1    Dudbridge, F.2
  • 2
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L. 2001. Random forests. Mach Learn 45:5-32.
    • (2001) Mach Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 3
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K. 1999. Genomic control for association studies. Biometrics 55:997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 5
    • 84949161141 scopus 로고
    • Data analysis using Stein's estimator and its generalizations
    • Efron B, Morris C. 1975. Data analysis using Stein's estimator and its generalizations. JASA 70:311-319.
    • (1975) JASA , vol.70 , pp. 311-319
    • Efron, B.1    Morris, C.2
  • 6
    • 69449102525 scopus 로고    scopus 로고
    • Harnessing the information contained within genome-wide association studies to improve individual prediction of complex disease risk
    • Evans DM, Visscher PM, Wray NR. 2009. Harnessing the information contained within genome-wide association studies to improve individual prediction of complex disease risk. Hum Mol Genet 18:3525-3531.
    • (2009) Hum Mol Genet , vol.18 , pp. 3525-3531
    • Evans, D.M.1    Visscher, P.M.2    Wray, N.R.3
  • 7
    • 79958773472 scopus 로고    scopus 로고
    • A flexible genome-wide bootstrap method that accounts for ranking and threshold-selection bias in GWAS interpretation and replication study design
    • Faye LL, Sun L, Dimitromanolakis A, Bull SB. 2011. A flexible genome-wide bootstrap method that accounts for ranking and threshold-selection bias in GWAS interpretation and replication study design. Stat Med 30:1898-1912.
    • (2011) Stat Med , vol.30 , pp. 1898-1912
    • Faye, L.L.1    Sun, L.2    Dimitromanolakis, A.3    Bull, S.B.4
  • 8
    • 42749087766 scopus 로고    scopus 로고
    • Estimating odds ratios in genome scans: an approximate conditional likelihood approach
    • Ghosh A, Zou F, Wright FA. 2008. Estimating odds ratios in genome scans: an approximate conditional likelihood approach. Am J Hum Genet 82:1064-1074.
    • (2008) Am J Hum Genet , vol.82 , pp. 1064-1074
    • Ghosh, A.1    Zou, F.2    Wright, F.A.3
  • 9
    • 65949107547 scopus 로고    scopus 로고
    • Common genetic variation and human traits
    • Goldstein DB. 2009. Common genetic variation and human traits. N Engl J Med 360:1696-1698.
    • (2009) N Engl J Med , vol.360 , pp. 1696-1698
    • Goldstein, D.B.1
  • 13
    • 84904261422 scopus 로고
    • The frequency distribution of the annual maximum (or minimum) of meteorological elements
    • Jenkinson AF. 1955. The frequency distribution of the annual maximum (or minimum) of meteorological elements. Q J Roy Meteorogical Soc 81:158-161.
    • (1955) Q J Roy Meteorogical Soc , vol.81 , pp. 158-161
    • Jenkinson, A.F.1
  • 14
    • 77956385510 scopus 로고    scopus 로고
    • Risk prediction using genome-wide association studies
    • Kooperberg C, LeBlanc M, Obenchain V. 2010. Risk prediction using genome-wide association studies. Genet Epidemiol 34:643-652.
    • (2010) Genet Epidemiol , vol.34 , pp. 643-652
    • Kooperberg, C.1    LeBlanc, M.2    Obenchain, V.3
  • 15
    • 79958131369 scopus 로고    scopus 로고
    • Novel method to estimate the phenotypic variation explained by genome-wide association studies reveals large fraction of the missing heritability
    • Kutalik Z, Whittaker J, Waterworth D, Beckmann JS, Bergmann S. 2011. Novel method to estimate the phenotypic variation explained by genome-wide association studies reveals large fraction of the missing heritability. Genet Epidemiol 35:341-349.
    • (2011) Genet Epidemiol , vol.35 , pp. 341-349
    • Kutalik, Z.1    Whittaker, J.2    Waterworth, D.3    Beckmann, J.S.4    Bergmann, S.5
  • 19
    • 78649508578 scopus 로고    scopus 로고
    • MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR. 2010. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 34:816-834.
    • (2010) Genet Epidemiol , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 20
    • 79957951017 scopus 로고    scopus 로고
    • Low-coverage sequencing: implications for design of complex trait association studies
    • Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR. 2011. Low-coverage sequencing: implications for design of complex trait association studies. Genome Res 21:940-951.
    • (2011) Genome Res , vol.21 , pp. 940-951
    • Li, Y.1    Sidore, C.2    Kang, H.M.3    Boehnke, M.4    Abecasis, G.R.5
  • 29
    • 31544449191 scopus 로고    scopus 로고
    • Using linkage genome scans to improve power of association in genome scans
    • Roeder K, Bacanu SA, Wasserman L, Devlin B. 2006. Using linkage genome scans to improve power of association in genome scans. Am J Hum Genet 78:243-252.
    • (2006) Am J Hum Genet , vol.78 , pp. 243-252
    • Roeder, K.1    Bacanu, S.A.2    Wasserman, L.3    Devlin, B.4
  • 30
    • 79851502150 scopus 로고    scopus 로고
    • Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology
    • Rossin EJ, Lage K, Raychaudhuri S, Xavier RJ, Tatar D, Benita Y, Cotsapas C, Daly MJ. 2011. Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology. PLoS Genet 7:e1001273
    • (2011) PLoS Genet , vol.7
    • Rossin, E.J.1    Lage, K.2    Raychaudhuri, S.3    Xavier, R.J.4    Tatar, D.5    Benita, Y.6    Cotsapas, C.7    Daly, M.J.8
  • 31
    • 78751507648 scopus 로고    scopus 로고
    • Mining gold dust under the genome wide significance level: a two-stage approach to analysis of GWAS
    • Shi G, Boerwinkle E, Morrison AC, Gu CC, Chakravarti A, Rao DC. 2011. Mining gold dust under the genome wide significance level: a two-stage approach to analysis of GWAS. Genet Epidemiol 35:111-118.
    • (2011) Genet Epidemiol , vol.35 , pp. 111-118
    • Shi, G.1    Boerwinkle, E.2    Morrison, A.C.3    Gu, C.C.4    Chakravarti, A.5    Rao, D.C.6
  • 33
    • 70349326221 scopus 로고    scopus 로고
    • Epigenetic inheritance and the missing heritability problem
    • Slatkin M. 2009. Epigenetic inheritance and the missing heritability problem. Genetics 182:845-850.
    • (2009) Genetics , vol.182 , pp. 845-850
    • Slatkin, M.1
  • 35
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani R. 1996. Regression shrinkage and selection via the lasso. J Roy Stat Soc B 58:267-288.
    • (1996) J Roy Stat Soc B , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 36
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of multiple cancer types by shrunken centroids of gene expression
    • Tibshirani R, Hastie T, Narasimhan B, Chu G. 2002. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci USA 99:6567-6572.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6567-6572
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 38
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Wellcome Trust Case Control Consortium.
    • Wellcome Trust Case Control Consortium. 2007. Genome-wide association study of 14, 000 cases of seven common diseases and 3, 000 shared controls. Nature 447:661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 39
    • 77949865384 scopus 로고    scopus 로고
    • Screen and clean: a tool for identifying interactions in genome-wide association studies
    • Wu J, Devlin B, Ringquist S, Trucco M, Roeder K. 2010. Screen and clean: a tool for identifying interactions in genome-wide association studies. Genet Epidemiol 34:275-285.
    • (2010) Genet Epidemiol , vol.34 , pp. 275-285
    • Wu, J.1    Devlin, B.2    Ringquist, S.3    Trucco, M.4    Roeder, K.5
  • 40
    • 67651022598 scopus 로고    scopus 로고
    • Quantifying and correcting for the winner's curse in genetic association studies
    • Xiao R, Boehnke M. 2009. Quantifying and correcting for the winner's curse in genetic association studies. Genet Epidemiol 33:453-462.
    • (2009) Genet Epidemiol , vol.33 , pp. 453-462
    • Xiao, R.1    Boehnke, M.2
  • 41
    • 79952528992 scopus 로고    scopus 로고
    • Quantifying and correcting for the winner's curse in quantitative-trait association studies
    • Xiao R, Boehnke M. 2011. Quantifying and correcting for the winner's curse in quantitative-trait association studies. Genet Epidemiol 35:133-138.
    • (2011) Genet Epidemiol , vol.35 , pp. 133-138
    • Xiao, R.1    Boehnke, M.2
  • 43
    • 52449107055 scopus 로고    scopus 로고
    • Bias-reduced estimators and confidence intervals for odds ratios in genome-wide association studies
    • Zhong H, Prentice RL. 2008. Bias-reduced estimators and confidence intervals for odds ratios in genome-wide association studies. Biostatistics 9:621-634.
    • (2008) Biostatistics , vol.9 , pp. 621-634
    • Zhong, H.1    Prentice, R.L.2
  • 44
    • 34147119077 scopus 로고    scopus 로고
    • Overcoming the winner's curse: estimating penetrance parameters from case-control data
    • Zollner S, Pritchard JK. 2007. Overcoming the winner's curse: estimating penetrance parameters from case-control data. Am J Hum Genet 80:605-615.
    • (2007) Am J Hum Genet , vol.80 , pp. 605-615
    • Zollner, S.1    Pritchard, J.K.2
  • 45
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and variable selection via the elastic net
    • Zou H, Hastie T. 2005. Regularization and variable selection via the elastic net. J Roy Stat Soc B 67:301-320.
    • (2005) J Roy Stat Soc B , vol.67 , pp. 301-320
    • Zou, H.1    Hastie, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.