메뉴 건너뛰기




Volumn 3, Issue JUN, 2012, Pages

Genetic diversity and relatedness of sweet cherry (Prunus Avium L.) cultivars based on single nucleotide polymorphic markers

Author keywords

3' UTR sequencing; Genetic parameters; High resolution melting analysis; Molecular markers; Parentage verification; Prunus avium L.

Indexed keywords


EID: 84871070819     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2012.00116     Document Type: Article
Times cited : (46)

References (63)
  • 1
    • 41049102508 scopus 로고    scopus 로고
    • Advances in molecular marker techniques and their applications in plant sciences
    • Agarwal, M., Shrivastava, N., and Padh, H. (2008). Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Rep. 27, 617-631.
    • (2008) Plant Cell Rep. , vol.27 , pp. 617-631
    • Agarwal, M.1    Shrivastava, N.2    Padh, H.3
  • 2
    • 0036192314 scopus 로고    scopus 로고
    • Development and variability analysis of microsatellite markers in peach
    • Aranzana, M. J., Garcia-MAS, J., Carbo, J., and Arus, P. (2002). Development and variability analysis of microsatellite markers in peach. Plant Breeding 121, 87-92.
    • (2002) Plant Breeding , vol.121 , pp. 87-92
    • Aranzana, M.J.1    Garcia-Mas, J.2    Carbo, J.3    Arus, P.4
  • 5
    • 0037986743 scopus 로고    scopus 로고
    • Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data
    • Batley, J., Barker, G., O'Sullivan, H., and Edwards, K. J. (2003). Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol. 132, 84-91.
    • (2003) Plant Physiol. , vol.132 , pp. 84-91
    • Batley, J.1    Barker, G.2    O'Sullivan, H.3    Edwards, K.J.4
  • 6
    • 0036010772 scopus 로고    scopus 로고
    • Insertion-deletion polymorphisms in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers
    • Bhattramakki, D., Dolan, M., Hanafey, M., Wineland, R., Vaske, D., Register, J. C., Tingey, S. V., and Rafalski, A. (2002). Insertion-deletion polymorphisms in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers. Plant Mol. Biol. 48, 539-547.
    • (2002) Plant Mol. Biol. , vol.48 , pp. 539-547
    • Bhattramakki, D.1    Dolan, M.2    Hanafey, M.3    Wineland, R.4    Vaske, D.5    Register, J.C.6    Tingey, S.V.7    Rafalski, A.8
  • 8
    • 79952853587 scopus 로고    scopus 로고
    • Characterization and mapping of non-S gametophytic self-incompatibility in sweet cherry (Prunus avium L.) J
    • Cachi, A. M., and Wünsch, A. (2011). Characterization and mapping of non-S gametophytic self-incompatibility in sweet cherry (Prunus avium L.) J. Exp. Bot. 62, 1847-1865.
    • (2011) Exp. Bot. , vol.62 , pp. 1847-1865
    • Cachi, A.M.1    Wünsch, A.2
  • 11
    • 3042806762 scopus 로고    scopus 로고
    • Inbreeding, coancestry and founding clones of sweet cherries from North America. J
    • Choi, C., and Kappel, F. (2004). Inbreeding, coancestry and founding clones of sweet cherries from North America.J. Am. Soc. Hortic. Sci. 129, 535-543.
    • (2004) Am. Soc. Hortic. Sci. , vol.129 , pp. 535-543
    • Choi, C.1    Kappel, F.2
  • 12
    • 0000113815 scopus 로고    scopus 로고
    • Sweet cherry pollination: Recommendation based on compatibility groups and bloom time
    • Choi, C., Livermore, K., and Andersen, R. L. (2000). Sweet cherry pollination: recommendation based on compatibility groups and bloom time. J. Am. Pomol. Soc. 54, 148-152.
    • (2000) J. Am. Pomol. Soc. , vol.54 , pp. 148-152
    • Choi, C.1    Livermore, K.2    Andersen, R.L.3
  • 13
    • 0032781515 scopus 로고    scopus 로고
    • AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L.) Batsch): Isolation, characterization and cross-species amplification in Prunus
    • Cipriani, G., Lot, G., Huang, H. G., Marrazzo, M. T., Peterlunger, E., and Testolin, R. (1999). AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L.) Batsch): isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Gen. 99, 65-72.
    • (1999) Theor. Appl. Gen. , vol.99 , pp. 65-72
    • Cipriani, G.1    Lot, G.2    Huang, H.G.3    Marrazzo, M.T.4    Peterlunger, E.5    Testolin, R.6
  • 16
    • 0036927474 scopus 로고    scopus 로고
    • Development of microsatellite markers in peach [Prunus persica (L.)Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.)
    • Dirlewanger, E., Cosson, P., Travaud, M., Aranzana, M. J., Poizat, C., Zanetto, A., Arús, P., and Laigret, F. (2002). Development of microsatellite markers in peach [Prunus persica (L.)Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor. Appl. Genet. 105, 127-138.33.
    • (2002) Theor. Appl. Genet. , vol.105
    • Dirlewanger, E.1    Cosson, P.2    Travaud, M.3    Aranzana, M.J.4    Poizat, C.5    Zanetto, A.6    Arús, P.7    Laigret, F.8
  • 17
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle, J. J., and Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
    • (1987) Phytochem. Bull. , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 19
    • 0031448412 scopus 로고    scopus 로고
    • The distribution of clones in managed and unmanaged populations of wild cherry (Prunu savium)
    • Ducci, F., and Santi, F. (1997). The distribution of clones in managed and unmanaged populations of wild cherry (Prunu savium). Can. J. Forest res. 27, 1998-2004
    • (1997) Can. J. Forest res. , vol.27 , pp. 1998-2004
    • Ducci, F.1    Santi, F.2
  • 20
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D., Stephens, M., and Pritchard, J. K. (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164, 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 21
    • 33748997911 scopus 로고    scopus 로고
    • Genetic diversity in fruiting-mei, apricot, plum and peach revealed by AFLP analysis
    • Fang, J., Tao, J., and Chao, C. T. (2006). Genetic diversity in fruiting-mei, apricot, plum and peach revealed by AFLP analysis. J. Hortic. Sci. Biotechnol. 81, 898-920.
    • (2006) J. Hortic. Sci. Biotechnol. , vol.81 , pp. 898-920
    • Fang, J.1    Tao, J.2    Chao, C.T.3
  • 24
    • 84879219908 scopus 로고    scopus 로고
    • Sweet cherry cultivar identification using RAPD derived DNA fingerprints
    • Gerlach, H. K., and Stosser, R. (1998). Sweet cherry cultivar identification using RAPD derived DNA fingerprints. Acta Hortic. 468, 63-69.
    • (1998) Acta Hortic. , vol.468 , pp. 63-69
    • Gerlach, H.K.1    Stosser, R.2
  • 25
    • 23044509486 scopus 로고    scopus 로고
    • Distinguishing different DNA heterozygotes by high-resolution melting
    • Graham, R., Liew, M., Meadows, C., Lyon, E., and Wittwer, C. T. (2005). Distinguishing different DNA heterozygotes by high-resolution melting. Clin. Chem. 51, 1295-1298.
    • (2005) Clin. Chem. , vol.51 , pp. 1295-1298
    • Graham, R.1    Liew, M.2    Meadows, C.3    Lyon, E.4    Wittwer, C.T.5
  • 26
    • 0038060807 scopus 로고    scopus 로고
    • Microsatellites in plants: A new class of molecular markers
    • Gupta, P. K., Balyan, H. S., Sharma, P. C., and Ramesh, B. (1996). Microsatellites in plants: a new class of molecular markers. Curr. Sci. 70, 45-54.
    • (1996) Curr. Sci. , vol.70 , pp. 45-54
    • Gupta, P.K.1    Balyan, H.S.2    Sharma, P.C.3    Ramesh, B.4
  • 28
    • 55949112903 scopus 로고    scopus 로고
    • High resolution melting curve analysis on the LightCycler (R) 480 PCR system
    • Hoffmann, M., Hurlebaus, J., and Weilke, C. (2007). High resolution melting curve analysis on the LightCycler (R) 480 PCR system. Nat. Methods (Suppl. S), AN17-AN18.
    • (2007) Nat. Methods , Issue.SUPPL. S
    • Hoffmann, M.1    Hurlebaus, J.2    Weilke, C.3
  • 29
    • 0033081036 scopus 로고    scopus 로고
    • Early selection in cherry combining RAPDs with embryo culture
    • Hormaza, J. I. (1999). Early selection in cherry combining RAPDs with embryo culture. Sci. Hortic. 79, 121-126.
    • (1999) Sci. Hortic. , vol.79 , pp. 121-126
    • Hormaza, J.I.1
  • 32
    • 33845622065 scopus 로고    scopus 로고
    • Bothintronsandlong3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • Kertesz, S., Kerenyi, Z., Merai, Z., Bartos, I., Palfy, T., Barta, E., and Silhavy, D. (2006). Bothintronsandlong3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res. 34, 6147-6157.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 6147-6157
    • Kertesz, S.1    Kerenyi, Z.2    Merai, Z.3    Bartos, I.4    Palfy, T.5    Barta, E.6    Silhavy, D.7
  • 33
    • 84855566971 scopus 로고    scopus 로고
    • Rapid SNP and haplotype development in non-model crops using 3′UTR sequencing
    • doi:10.1186/1471-2164-13-18
    • Koepke, T., Schaeffer, S., Krishnan, V., Jiwan, D., Whiting, M., Oraguzie, N., and Dhingra, A. (2012). Rapid SNP and haplotype development in non-model crops using 3′UTR sequencing. BMC Genomics 12, 13-18. doi:10.1186/1471-2164-13-18
    • (2012) BMC Genomics , vol.12 , pp. 13-18
    • Koepke, T.1    Schaeffer, S.2    Krishnan, V.3    Jiwan, D.4    Whiting, M.5    Oraguzie, N.6    Dhingra, A.7
  • 35
    • 78649970941 scopus 로고    scopus 로고
    • Development and mapping of peach candidate genes involved in fruit quality and their transferability and potential use in other Rosaceae species
    • Le Dantec, L., Cardinet, G., Bonet, J., Fouche, M., Boudehri, K., Monfort, A., Poessel, J. L., Moing, A., and Dirlewanger, E. (2010). Development and mapping of peach candidate genes involved in fruit quality and their transferability and potential use in other Rosaceae species. Tree Genet. Genome 6, 995-1012.
    • (2010) Tree Genet. Genome , vol.6 , pp. 995-1012
    • Le Dantec, L.1    Cardinet, G.2    Bonet, J.3    Fouche, M.4    Boudehri, K.5    Monfort, A.6    Poessel, J.L.7    Moing, A.8    Dirlewanger, E.9
  • 36
    • 50249161491 scopus 로고    scopus 로고
    • The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley
    • Lehmensiek, A., Mark, W., Sutherland, R., and McNamara, B. (2008). The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley. Theor. Appl. Genet. 117, 721-728.
    • (2008) Theor. Appl. Genet. , vol.117 , pp. 721-728
    • Lehmensiek, A.1    Mark, W.2    Sutherland, R.3    McNamara, B.4
  • 37
    • 80054955187 scopus 로고    scopus 로고
    • Identification and genetic diversity assessment of cherry cultivars and rootstocks using the ISSR-PCR technique
    • Lisek, A., and Rozpara, E. (2009). Identification and genetic diversity assessment of cherry cultivars and rootstocks using the ISSR-PCR technique. J. Fruit Ornamental Plant Res. 17, 95-106.
    • (2009) J. Fruit Ornamental Plant Res. , vol.17 , pp. 95-106
    • Lisek, A.1    Rozpara, E.2
  • 38
    • 53249143880 scopus 로고    scopus 로고
    • 0.3′ UTRs are the primary regulators of gene expression in the C. elegans germline
    • Merritt, C., Rasoloson, D., Ko, D., and Seydoux, G. (2008) 0.3′ UTRs are the primary regulators of gene expression in the C. elegans germline. Curr. Biol. 18, 1476-1482.
    • (2008) Curr. Biol. , vol.18 , pp. 1476-1482
    • Merritt, C.1    Rasoloson, D.2    Ko, D.3    Seydoux, G.4
  • 39
    • 2542466106 scopus 로고    scopus 로고
    • Simple sequence repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond
    • Mnejja, M., Garcia-Mas, M., Howad, W., Badenes, M. L., and Arús, P. (2004). Simple sequence repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond. Mol. Ecol. Notes 4, 163-166.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 163-166
    • Mnejja, M.1    Garcia-Mas, M.2    Howad, W.3    Badenes, M.L.4    Arús, P.5
  • 40
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei, M., and Li, W. H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 76, 5269-5273.
    • (1979) Proc. Natl. Acad. Sci. U.S.A. , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 41
    • 29144441117 scopus 로고    scopus 로고
    • Genetic variation in flowering cherries (Prunus subgenus Cerasus) characterized by SSR markers
    • Ohta, S., Katsuki, T., Tanaka, T., Hayashi, T., Sato, Y. I., and Yamamoto, T. (2005). Genetic variation in flowering cherries (Prunus subgenus Cerasus) characterized by SSR markers. Breed. Sci. 55, 415-424.
    • (2005) Breed. Sci. , vol.55 , pp. 415-424
    • Ohta, S.1    Katsuki, T.2    Tanaka, T.3    Hayashi, T.4    Sato, Y.I.5    Yamamoto, T.6
  • 44
    • 0036947871 scopus 로고    scopus 로고
    • pmr1, a gene for resistance to powdery mildew in sweet cherry
    • Olmstead, J. W., and Lang, G. A. (2002). pmr1, a gene for resistance to powdery mildew in sweet cherry. HortScience 37, 1098-1099.
    • (2002) HortScience , vol.37 , pp. 1098-1099
    • Olmstead, J.W.1    Lang, G.A.2
  • 47
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • Rafalski, A. (2002). Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 5, 94-100.
    • (2002) Curr. Opin. Plant Biol. , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 49
    • 14744271780 scopus 로고    scopus 로고
    • Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphisms
    • Salmaso, M., Faes, G., Segala, C., and Stefanini, M. (2004). Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphisms. Mol. Breed. 14, 385-395.
    • (2004) Mol. Breed. , vol.14 , pp. 385-395
    • Salmaso, M.1    Faes, G.2    Segala, C.3    Stefanini, M.4
  • 50
    • 0037311175 scopus 로고    scopus 로고
    • Characterization of microsatellites in wild and sweet cherry (Prunu savium L.) markers for individual identification and reproductive processes
    • Schueler, S., Tusch, A., Schuster, M., and Ziegenhagen, B. (2003). Characterization of microsatellites in wild and sweet cherry (Prunu savium L.) markers for individual identification and reproductive processes. Genome 46, 95-102.
    • (2003) Genome , vol.46 , pp. 95-102
    • Schueler, S.1    Tusch, A.2    Schuster, M.3    Ziegenhagen, B.4
  • 51
    • 0005811921 scopus 로고
    • Breeding self incompatible almonds
    • Socias i Company
    • Socias i Company. (1990). Breeding self incompatible almonds. Plant Breed. Rev. 8, 313-338.
    • (1990) Plant Breed. Rev. , vol.8 , pp. 313-338
  • 53
    • 0033859764 scopus 로고    scopus 로고
    • Microsatellite DNA in peach (Prunu spersica (L.)Batsch) and its use in fingerprinting and testing the genetic origin of cultivars
    • Testolin, R., Marrazzo, T., Cipriani, G., Quarta, R., Verde, I., Dettori, T., Pancaldi, M., and Sansavini, S. (2000). Microsatellite DNA in peach (Prunu spersica (L.)Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43, 512-520.
    • (2000) Genome , vol.43 , pp. 512-520
    • Testolin, R.1    Marrazzo, T.2    Cipriani, G.3    Quarta, R.4    Verde, I.5    Dettori, T.6    Pancaldi, M.7    Sansavini, S.8
  • 55
    • 4344600664 scopus 로고    scopus 로고
    • Characterization of novel microsatellites and development of multiplex PCR for large-scale population studies in wild cherry, Prunu savium
    • Vaughan, S. P., and Russell, K. (2004). Characterization of novel microsatellites and development of multiplex PCR for large-scale population studies in wild cherry, Prunu savium. Mol. Ecol. Notes 4, 429-431.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 429-431
    • Vaughan, S.P.1    Russell, K.2
  • 56
    • 0002115346 scopus 로고
    • Cherry, plum, peach, apricot, and almond
    • in ed. N. W. Simmonds (New York: Longman)
    • Watkins, R. (1976). "Cherry, plum, peach, apricot, and almond, "in Evolution of Crop Plants, ed. N. W. Simmonds (New York: Longman), 242-247.
    • (1976) Evolution of Crop Plants , pp. 242-247
    • Watkins, R.1
  • 57
    • 0005902203 scopus 로고    scopus 로고
    • The taxonomic classification of sweet and sour cherries and a brief history of their cultivation
    • in Production and Uses, eds A. D. Webster, and N. E. Looney (Wallingford, Oxon: CAB International)
    • Webster, A. D. (1996). "The taxonomic classification of sweet and sour cherries and a brief history of their cultivation, " in Cherries: Crop Physiology, Production and Uses, eds A. D. Webster, and N. E. Looney (Wallingford, Oxon: CAB International), 3-24.
    • (1996) Cherries: Crop Physiology , pp. 3-24
    • Webster, A.D.1
  • 58
  • 59
    • 60949096974 scopus 로고    scopus 로고
    • Cross-transferable polymorphic SSR loci in Prunus species
    • Wünsch, A. (2009). Cross-transferable polymorphic SSR loci in Prunus species. Sci. Hortic. 120, 348-352.
    • (2009) Sci. Hortic. , vol.120 , pp. 348-352
    • Wünsch, A.1
  • 60
    • 0035997589 scopus 로고    scopus 로고
    • Molecular characterisation of sweet cherry (Prunus avium L.) genotypes using peach [Prunus persica (L.) Batsch] SSR sequences
    • Wünsch, A., and Hormaza, J. I. (2002). Molecular characterisation of sweet cherry (Prunus avium L.) genotypes using peach [Prunus persica (L.) Batsch] SSR sequences. Heredity 89, 56-63.
    • (2002) Heredity , vol.89 , pp. 56-63
    • Wünsch, A.1    Hormaza, J.I.2
  • 61
    • 29144439232 scopus 로고    scopus 로고
    • SSR allelic variation in almond (Prunus dulcis Miller)
    • Xie, H., Sui, Y., Chang, F. Q., Xu, Y., and Ma, R. C. (2006). SSR allelic variation in almond (Prunus dulcis Miller). Theor. Appl. Genet. 112, 366-372.
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 366-372
    • Xie, H.1    Sui, Y.2    Chang, F.Q.3    Xu, Y.4    Ma, R.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.