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Volumn 110, Issue 1, 2013, Pages 46-56

Population structure and landscape genetics of two endangered frog species of genus Odorrana: Different scenarios on two islands

Author keywords

cost path analysis; ecological niche modeling; endangered species; gene flow; microsatellite; population genetics

Indexed keywords

MICROSATELLITE DNA;

EID: 84871036138     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2012.59     Document Type: Article
Times cited : (24)

References (60)
  • 1
    • 0000501656 scopus 로고
    • Information theory and an extension of the maximum likelihood principle
    • Petrov BN, Csaki F (eds). Akademiai Kiado: Budapest
    • Akaike H (1973). Information theory and an extension of the maximum likelihood principle. In: Petrov BN, Csaki F (eds) Second International Symposium on Information Theory. Akademiai Kiado: Budapest, pp 267-281.
    • (1973) Second International Symposium on Information Theory , pp. 267-281
    • Akaike, H.1
  • 2
    • 77955558485 scopus 로고    scopus 로고
    • Unified framework to evaluate panmixia and migration direction among multiple sampling locations
    • Beerli P, Palczewski M (2010). Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics 185: 313-326.
    • (2010) Genetics , vol.185 , pp. 313-326
    • Beerli, P.1    Palczewski, M.2
  • 4
    • 0030478757 scopus 로고    scopus 로고
    • Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data
    • Cornuet JM, Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
    • (1996) Genetics , vol.144 , pp. 2001-2014
    • Cornuet, J.M.1    Luikart, G.2
  • 5
    • 4344707906 scopus 로고    scopus 로고
    • Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: An individual-based approach
    • Coulon A, Cosson JF, Angibault JM, Cargnelutti B, Galan M, Morellet N et al. (2004). Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Mol Ecol 13: 2841-2850.
    • (2004) Mol Ecol , vol.13 , pp. 2841-2850
    • Coulon, A.1    Cosson, J.F.2    Angibault, J.M.3    Cargnelutti, B.4    Galan, M.5    Morellet, N.6
  • 6
    • 73949141293 scopus 로고    scopus 로고
    • Species distribution models: Ecological explanation and prediction across space and time
    • Elith J, Leathwick JR (2009). Species distribution models: ecological explanation and prediction across space and time. Annu Rev Ecol Evol Syst 40: 677-697.
    • (2009) Annu Rev Ecol Evol Syst , vol.40 , pp. 677-697
    • Elith, J.1    Leathwick, J.R.2
  • 7
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • Evanno G, Regnaut S, Goudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 8
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567.
    • (2010) Mol Ecol Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 10
    • 13444291748 scopus 로고    scopus 로고
    • Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape
    • Funk WC, Blouin MS, Corn PS, Maxell BA, Pilliod DS, Amish S et al. (2005). Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape. Mol Ecol 14: 483-496.
    • (2005) Mol Ecol , vol.14 , pp. 483-496
    • Funk, W.C.1    Blouin, M.S.2    Corn, P.S.3    Maxell, B.A.4    Pilliod, D.S.5    Amish, S.6
  • 11
    • 0035076168 scopus 로고    scopus 로고
    • Detection of reduction in population size using data from microsatellite loci
    • Garza JC, Williamson EG (2001). Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10: 305-318.
    • (2001) Mol Ecol , vol.10 , pp. 305-318
    • Garza, J.C.1    Williamson, E.G.2
  • 12
    • 34047189797 scopus 로고    scopus 로고
    • The influence of altitude and topography on genetic structure in the long-toed salamander (Ambystoma macrodactulym)
    • Giordano AR, Ridenhour BJ, Storfer A (2007). The influence of altitude and topography on genetic structure in the long-toed salamander (Ambystoma macrodactulym). Mol Ecol 16: 1625-1637.
    • (2007) Mol Ecol , vol.16 , pp. 1625-1637
    • Giordano, A.R.1    Ridenhour, B.J.2    Storfer, A.3
  • 14
    • 4344644543 scopus 로고    scopus 로고
    • Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs
    • Graham CH, Ron SR, Santos JC, Schneider CJ, Moritz C (2004). Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs. Evolution 58: 1781-1793.
    • (2004) Evolution , vol.58 , pp. 1781-1793
    • Graham, C.H.1    Ron, S.R.2    Santos, J.C.3    Schneider, C.J.4    Moritz, C.5
  • 15
    • 0026689178 scopus 로고
    • Performing the exact test of Hardy-Weinberg proportion for multiple alleles
    • Guo SW, Thompson EA (1992). Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48: 361-372.
    • (1992) Biometrics , vol.48 , pp. 361-372
    • Guo, S.W.1    Thompson, E.A.2
  • 16
    • 33750006271 scopus 로고    scopus 로고
    • Evaluating the ability of habitat suitability models to predict species presences
    • Hirzel AH, Lelay G, Helfer V, Randin C, Guisan A (2006). Evaluating the ability of habitat suitability models to predict species presences. Ecol Modell 199: 142-152.
    • (2006) Ecol Modell , vol.199 , pp. 142-152
    • Hirzel, A.H.1    Lelay, G.2    Helfer, V.3    Randin, C.4    Guisan, A.5
  • 17
    • 68949103876 scopus 로고    scopus 로고
    • Inferring weak population structure with the assistance of sample group information
    • Hubisz MJ, Falush D, Stephens M, Pritchard JK (2009). Inferring weak population structure with the assistance of sample group information. Mol Ecol Resour 9: 1322-1332.
    • (2009) Mol Ecol Resour , vol.9 , pp. 1322-1332
    • Hubisz, M.J.1    Falush, D.2    Stephens, M.3    Pritchard, J.K.4
  • 18
    • 84859844786 scopus 로고    scopus 로고
    • Isolation and characterization of twelve microsatellite loci of endangered Ishikawa's frog (Odorrana ishikawae)
    • Igawa T, Okuda M, Oumi S, Katsuren S, Kurabayashi A, Umino T et al. (2011). Isolation and characterization of twelve microsatellite loci of endangered Ishikawa's frog (Odorrana ishikawae). Conserv Genet Resour 3: 421-424.
    • (2011) Conserv Genet Resour , vol.3 , pp. 421-424
    • Igawa, T.1    Okuda, M.2    Oumi, S.3    Katsuren, S.4    Kurabayashi, A.5    Umino, T.6
  • 20
    • 79951829311 scopus 로고
    • A brief observation on the breeding site and eggs of a frog, Rana ishikawae (Stejneger) in Okinawa Island
    • Ikehara S (ed). Naha Okinawa, University of Ryukyus: Okinawa
    • Katsuren S, Tanaka S, Ikehara S (1977). A brief observation on the breeding site and eggs of a frog, Rana ishikawae (Stejneger) in Okinawa Island. In: Ikehara S (ed) Ecological Studies of Nature Conservation of the Ryukyu Islands-(III). Naha Okinawa, University of Ryukyus: Okinawa. pp 49-54.
    • (1977) Ecological Studies of Nature Conservation of the Ryukyu Islands-(III) , pp. 49-54
    • Katsuren, S.1    Tanaka, S.2    Ikehara, S.3
  • 21
    • 0010252020 scopus 로고    scopus 로고
    • Palaeogeography of the ryukyu Islands
    • Kimura M (2000). Palaeogeography of the Ryukyu Islands. Tropics 10: 5-24.
    • (2000) Tropics , vol.10 , pp. 5-24
    • Kimura, M.1
  • 22
    • 0344055032 scopus 로고
    • Herpetological fauna of amamioshima, Loo Choo Islands
    • in Japanese
    • Koba K (1955). Herpetological Fauna of Amamioshima, Loo Choo Islands. Mem Fac Edu Kumamoto Univ 3: 145-162, in Japanese.
    • (1955) Mem Fac Edu Kumamoto Univ , vol.3 , pp. 145-162
    • Koba, K.1
  • 23
    • 79951819507 scopus 로고    scopus 로고
    • Inter- and intra- island divergence in Odorrana ishikawae (Anura, Ranidae) of the Ryukyu Archipelago of Japan, with description of a new species
    • Kuramoto M, Satou N, Oumi S, Kurabayashi A, Sumida M (2011). Inter- and intra- island divergence in Odorrana ishikawae (Anura, Ranidae) of the Ryukyu Archipelago of Japan, with description of a new species. Zootaxa 2767: 25-40.
    • (2011) Zootaxa , vol.2767 , pp. 25-40
    • Kuramoto, M.1    Satou, N.2    Oumi, S.3    Kurabayashi, A.4    Sumida, M.5
  • 24
    • 33644842335 scopus 로고    scopus 로고
    • Linking direct and indirect data on dispersal: Isolation by slope in a headwater stream salamander
    • Lowe WH, Likens GE, McPeek MA, Buso DC (2006). Linking direct and indirect data on dispersal: isolation by slope in a headwater stream salamander. Ecology 87: 334-339.
    • (2006) Ecology , vol.87 , pp. 334-339
    • Lowe, W.H.1    Likens, G.E.2    McPeek, M.A.3    Buso, D.C.4
  • 26
    • 0037376204 scopus 로고    scopus 로고
    • Landscape genetics: Combining landscape ecology and population genetics
    • Manel S, Schwartz MK, Luikart G, Taberlet P (2003). Landscape genetics: combining landscape ecology and population genetics. Trends Ecol Evol 18: 189-197.
    • (2003) Trends Ecol Evol , vol.18 , pp. 189-197
    • Manel, S.1    Schwartz, M.K.2    Luikart, G.3    Taberlet, P.4
  • 27
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • Mantel, N.1
  • 28
    • 84871061794 scopus 로고
    • Different nature of the hills across north and south
    • Matsui K, Takeuchi K, Tamura T (eds). Kokon shoin: Tokyo, , in Japanese
    • Matsui K, Isotani T (1990). Different nature of the hills across north and south In: Matsui K, Takeuchi K, Tamura T (eds) Natural Environment in Hills. Kokon shoin: Tokyo, pp 5-10, in Japanese.
    • (1990) Natural Environment in Hills , pp. 5-10
    • Matsui, K.1    Isotani, T.2
  • 29
    • 27744506959 scopus 로고    scopus 로고
    • Multiple invasions of the Ryukyu Archipelago by Oriental frogs of the subgenus Odorrana with phylogenetic reassessment of the related subgenera of the genus
    • Matsui M, Shimada T, Ota H (2005). Multiple invasions of the Ryukyu Archipelago by Oriental frogs of the subgenus Odorrana with phylogenetic reassessment of the related subgenera of the genus. Rana Mol Phylogenet Evol 37: 733-742.
    • (2005) Rana Mol Phylogenet Evol , vol.37 , pp. 733-742
    • Matsui, M.1    Shimada, T.2    Ota, H.3
  • 30
    • 84871084688 scopus 로고
    • Gebietsmonographie und raumliche Ordnung der Vegetation
    • Miyawaki A (ed). Shibundo: Tokyo, , in Japanese
    • Miyawaki A (1989). Gebietsmonographie und raumliche Ordnung der Vegetation. In: Miyawaki A (ed) Vegetation of Japan Okinawa & Ogasawara. Shibundo: Tokyo, pp 465-539, in Japanese.
    • (1989) Vegetation of Japan Okinawa & Ogasawara , pp. 465-539
    • Miyawaki, A.1
  • 31
    • 0016629918 scopus 로고
    • The bottleneck effect and genetic variability in populations
    • Nei M, Maruyama T, Chakraborty R (1975). The bottleneck effect and genetic variability in populations. Evolution 29: 1-10.
    • (1975) Evolution , vol.29 , pp. 1-10
    • Nei, M.1    Maruyama, T.2    Chakraborty, R.3
  • 32
    • 0020965531 scopus 로고
    • Accuracy of estimated phylogenetic trees from molecular data II Gene frequency data
    • Nei M, Tajima F, Tateno Y (1983). Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol 19: 153-170.
    • (1983) J Mol Evol , vol.19 , pp. 153-170
    • Nei, M.1    Tajima, F.2    Tateno, Y.3
  • 34
    • 80155158486 scopus 로고    scopus 로고
    • Reproduction of Ishikawa's frog on Amami Oshima Island
    • in Japanese
    • Oumi S (2006). Reproduction of Ishikawa's frog on Amami Oshima Island. Bulletin of The Herpetological Society of Japan 2006: 104-108, in Japanese
    • (2006) Bulletin of the Herpetological Society of Japan , vol.2006 , pp. 104-108
    • Oumi, S.1
  • 36
    • 1642410112 scopus 로고    scopus 로고
    • Beyond FST: Analysis of population genetic data for conservation
    • Pearse DE, Crandall KA (2004). Beyond FST: analysis of population genetic data for conservation. Conserv Genet 5: 585-602.
    • (2004) Conserv Genet , vol.5 , pp. 585-602
    • Pearse, D.E.1    Crandall, K.A.2
  • 37
    • 27944446350 scopus 로고    scopus 로고
    • Maximum entropy modeling of species geographic distributions
    • Phillips S, Anderson R, Schapire R (2006). Maximum entropy modeling of species geographic distributions. Ecol Modell 190: 231-259.
    • (2006) Ecol Modell , vol.190 , pp. 231-259
    • Phillips, S.1    Anderson, R.2    Schapire, R.3
  • 38
    • 0032880393 scopus 로고    scopus 로고
    • BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data
    • Piry S, Luikart G, Cornuet JM (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J Hered 90: 502-503.
    • (1999) J Hered , vol.90 , pp. 502-503
    • Piry, S.1    Luikart, G.2    Cornuet, J.M.3
  • 39
    • 0024224682 scopus 로고
    • Sources, sinks and population regulation
    • Pulliam HR (1988). Sources, sinks and population regulation. Am Nat 132: 652-661.
    • (1988) Am Nat , vol.132 , pp. 652-661
    • Pulliam, H.R.1
  • 40
    • 69249123719 scopus 로고    scopus 로고
    • Effects of slope and riparian habitat connectivity on gene flow in an endangered Panamanian frog, Atelopus varius
    • Richards-Zawacki CL (2009). Effects of slope and riparian habitat connectivity on gene flow in an endangered Panamanian frog, Atelopus varius. Divers Distrib 15: 796-806.
    • (2009) Divers Distrib , vol.15 , pp. 796-806
    • Richards-Zawacki, C.L.1
  • 41
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
    • Rousset F (1997). Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219.
    • (1997) Genetics , vol.145 , pp. 1219
    • Rousset, F.1
  • 42
    • 36849080837 scopus 로고    scopus 로고
    • Genepop'007: A complete reimplementation of the Genepop software for Windows and Linux
    • Rousset F (2008). Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour 8: 103-106.
    • (2008) Mol Ecol Resour , vol.8 , pp. 103-106
    • Rousset, F.1
  • 43
    • 21244477543 scopus 로고    scopus 로고
    • Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum)
    • Spear SF, Peterson CR, Matocq MD, Storfer A (2005). Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Mol Ecol 14: 2553-2564.
    • (2005) Mol Ecol , vol.14 , pp. 2553-2564
    • Spear, S.F.1    Peterson, C.R.2    Matocq, M.D.3    Storfer, A.4
  • 44
    • 54849407176 scopus 로고    scopus 로고
    • Landscape genetic structure of coastal tailed frogs (Ascaphus truei) in protected vs
    • Spear SF, Storfer A (2008). Landscape genetic structure of coastal tailed frogs (Ascaphus truei) in protected vs. managed forests. Mol Ecol 17: 4642-4656.
    • (2008) Managed Forests. Mol Ecol , vol.17 , pp. 4642-4656
    • Spear, S.F.1    Storfer, A.2
  • 47
    • 77952307333 scopus 로고    scopus 로고
    • POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with windows interface
    • Takezaki N, Nei M, Tamura K (2010). POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with windows interface. Mol Biol Evol 27: 747-752.
    • (2010) Mol Biol Evol , vol.27 , pp. 747-752
    • Takezaki, N.1    Nei, M.2    Tamura, K.3
  • 48
    • 84871072531 scopus 로고
    • Rana ishikawae
    • Ministry of Agriculture, Forestry and Fisheries (ed) Japan Fisheries Resource Conservation Association: Tokyo, , in Japanese.
    • Utsunomiya T (1995). Rana ishikawae. In: Ministry of Agriculture, Forestry and Fisheries (ed) Basic Data for Rare Wild Aquatic Organisms (II). Japan Fisheries Resource Conservation Association: Tokyo, pp 429-475, in Japanese.
    • (1995) Basic Data for Rare Wild Aquatic Organisms (II). , pp. 429-475
    • Utsunomiya, T.1
  • 49
    • 80155177024 scopus 로고
    • Some ecological observations of Rana ishikawae, a rare frog endemic to Ryukyu Islands
    • Utsunomiya Y, Utsunomiya T, Katsuren S (1979). some ecological observations of Rana ishikawae, a rare frog endemic to Ryukyu Islands. Proc Jpn Acad Ser B Phys Biol Sci 55: 233-237.
    • (1979) Proc Jpn Acad ser B Phys Biol Sci , vol.55 , pp. 233-237
    • Utsunomiya, Y.1    Utsunomiya, T.2    Katsuren, S.3
  • 50
    • 4344606590 scopus 로고    scopus 로고
    • Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data
    • Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004). Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
    • (2004) Mol Ecol Notes , vol.4 , pp. 535-538
    • Van Oosterhout, C.1    Hutchinson, W.F.2    Wills, D.P.M.3    Shipley, P.4
  • 52
    • 70349089195 scopus 로고    scopus 로고
    • Fine-scale population structure in a desert amphibian: Landscape genetics of the black toad (Bufo exsul)
    • Wang IJ (2009). Fine-scale population structure in a desert amphibian: landscape genetics of the black toad (Bufo exsul). Mol Ecol 18: 3847-3856.
    • (2009) Mol Ecol , vol.18 , pp. 3847-3856
    • Wang, I.J.1
  • 53
    • 62849097750 scopus 로고    scopus 로고
    • Landscape genetics and least-cost path analysis reveal unexpected dispersal routes in the California tiger salamander (Ambystoma californiense)
    • Wang IJ, Savage WK, Shaffer HB (2009). Landscape genetics and least-cost path analysis reveal unexpected dispersal routes in the California tiger salamander (Ambystoma californiense). Mol Ecol 18: 1365-1374.
    • (2009) Mol Ecol , vol.18 , pp. 1365-1374
    • Wang, I.J.1    Savage, W.K.2    Shaffer, H.B.3
  • 54
    • 74549145030 scopus 로고    scopus 로고
    • Genetic structure is correlated with phenotypic divergence rather than geographic isolation in the highly polymorphic strawberry poison-dart frog
    • Wang IJ, Summers K (2010). Genetic structure is correlated with phenotypic divergence rather than geographic isolation in the highly polymorphic strawberry poison-dart frog. Mol Ecol 19: 447-458.
    • (2010) Mol Ecol , vol.19 , pp. 447-458
    • Wang, I.J.1    Summers, K.2
  • 55
    • 52549096432 scopus 로고    scopus 로고
    • Habitat suitability modelling to correlate gene flow with landscape connectivity
    • Wang Y-H, Yang K-C, Bridgman CL, Lin L-K (2008). Habitat suitability modelling to correlate gene flow with landscape connectivity. Landsc Ecol 23: 989-1000.
    • (2008) Landsc Ecol , vol.23 , pp. 989-1000
    • Wang, Y.-H.1    Yang, K.-C.2    Bridgman, C.L.3    Lin, L.-K.4
  • 56
    • 38349191019 scopus 로고    scopus 로고
    • Effects of exotic mongoose (Herpestes javanicus) on the native fauna of Amami-Oshima Island, southern Japan, estimated by distribution patterns along the historical gradient of mongoose invasion
    • Watari Y, Takatsuki S, Miyashita T (2008). Effects of exotic mongoose (Herpestes javanicus) on the native fauna of Amami-Oshima Island, southern Japan, estimated by distribution patterns along the historical gradient of mongoose invasion. Biol Invasions 10: 7-17.
    • (2008) Biol Invasions , vol.10 , pp. 7-17
    • Watari, Y.1    Takatsuki, S.2    Miyashita, T.3
  • 57
    • 30144439114 scopus 로고    scopus 로고
    • Comparison of methods for detecting bottlenecks from microsatellite loci
    • Williamson-Natesan EG (2005). Comparison of methods for detecting bottlenecks from microsatellite loci. Conserv Genet 6: 551-562.
    • (2005) Conserv Genet , vol.6 , pp. 551-562
    • Williamson-Natesan, E.G.1
  • 58
    • 0037355101 scopus 로고    scopus 로고
    • Bayesian inference of recent migration rates using multilocus genotypes
    • Wilson GA, Rannala B (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191.
    • (2003) Genetics , vol.163 , pp. 1177-1191
    • Wilson, G.A.1    Rannala, B.2
  • 60
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright S (1943). Isolation by distance. Genetics 28: 114-318.
    • (1943) Genetics , vol.28 , pp. 114-318
    • Wright, S.1


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