Galenea microaerophila gen. nov., sp. nov., a mesophilic, microaerophilic, chemosynthetic, thiosulfate-oxidizing bacterium isolated from a shallow-water hydrothermal vent

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 12, 2012, Pages 3060-3066

  Giovannelli, Donato ^a,b   Grosche, Ashley ^a   Starovoytov, Valentin ^a   Yakimov, Michail ^c   Manini, Elena ^b   Vetriani, Costantino ^a  

^a RUTGERS UNIVERSITY   (United States)

^b CNR   (Italy)

^c CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; CARBON; GENOMIC DNA; GLUCOSE; OXYGEN; RNA 16S; SODIUM CHLORIDE; SUCROSE;

ARTICLE; BACTERIAL GROWTH; CARBON SOURCE; CHEMOLITHOAUTOTROPH; CONTROLLED STUDY; DNA BASE COMPOSITION; ENERGY RESOURCE; GALENEA MICROAEROPHILA; GAMMAPROTEOBACTERIA; GENETIC SIMILARITY; GRAM NEGATIVE BACTERIUM; HYDROTHERMAL VENT; MESOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; THIOMICROSPIRA; THIOMICROSPIRA PSYCHROPHILA; WATER TEMPERATURE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHEMOAUTOTROPHIC GROWTH; DNA, BACTERIAL; HYDROTHERMAL VENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PISCIRICKETTSIACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; THIOSULFATES;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; PISCIRICKETTSIACEAE; THIOMICROSPIRA PSYCHROPHILA;

EID: 84870897230     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.040808-0     Document Type: Article

References (34)

1. Brinkhoff, T. & Muyzer, G. (1997). Increased species diversity and extended habitat range of sulfur-oxidizing Thiomicrospira spp. Appl Environ Microbiol 63, 3789-3796.
2. Brinkhoff, T., Muyzer, G., Wirsen, C. O. & Kuever, J. (1999a). Thiomicrospira chilensis sp. nov., a mesophilic obligately chemo-lithoautotrophic sulphur-oxidizing bacterium isolated from a Thioploca mat. Int J Syst Bacteriol 49, 875-879.
3. Brinkhoff, T., Sievert, S. M., Kuever, J. & Muyzer, G. (1999b). Distribution and diversity of sulfur-oxidizing Thiomicrospira spp. at a shallow-water hydrothermal vent in the Aegean Sea (Milos, Greece). Appl Environ Microbiol 65, 3843-3849.
4. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Crespo-Medina, M., Chatziefthimiou, A., Cruz-Matos, R., Pérez-Rodríguez, I., Barkay, T., Lutz, R. A., Starovoytov, V. & Vetriani, C. (2009). Salinisphaera hydrothermalis sp. nov., a mesophilic, haloto-lerant, facultatively autotrophic, thiosulfate-oxidizing gammaproteo-bacterium from deep-sea hydrothermal vents, and emended description of the genus Salinisphaera. Int J Syst Evol Microbiol 59, 1497-1503.
6. Dando, P. R., Thomm, M., Arab, H. & other authors (1998). Microbiology of shallow hydrothermal sites off Palaeochori Bay, Milos (Hellenic Volcanic Arc). Cah Biol Mar 39, 369-372.
7. Dando, P. R., Aliani, S., Arab, H., Bianchi, C. N., Brehmer, M., Cocito, S., Fowlers, S. W., Gundersen, J., Hooper, L. E. & other authors (2000). Hydrothermal studies in the Aegean Sea. Phys Chem Earth Part B 25, 1-8.
8. De Soete, G. (1983). A least squares algorithm for fitting additive trees to proximity data. Psychometrica 48, 621-626.
9. Galtier, N., Gouy, M. & Gautier, C. (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548.
10. Guindon, S., Dufayard, J. -F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3. 0. Syst Biol 59, 307-321.
11. Inagaki, F., Takai, K., Nealson, K. H. & Horikoshi, K. (2004). Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the e-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. Int J Syst Evol Microbiol 54, 1477-1482.
12. Jannasch, H. W., Wirsen, C. O., Nelson, D. C. & Robertson, L. A. (1985). Thiomicrospira crunogena sp. nov., a colorless, sulfur-oxidizing bacterium from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 35, 422-424.
13. Kuenen, J. G. & Veldkamp, H. (1972). Thiomicrospira pelophila, gen. n., sp. n., a new obligately chemolithotrophic colourless sulfur bacterium. Antonie van Leeuwenhoek 38, 241-256.
14. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
15. Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Muyzer, G., Teske, A., Wirsen, C. O. & Jannasch, H. W. (1995). Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164, 165-172.
17. Nakagawa, S. & Takai, K. (2008). Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65, 1-14.
18. Perrière, G. & Gouy, M. (1996). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364-369.
19. Ruby, E. G. & Jannasch, H. W. (1982). Physiological characteristics of Thiomicrospira sp. strain L-12 isolated from deep-sea hydrothermal vents. J Bacteriol 149, 161-165.
20. Schulz, H. N., Brinkhoff, T., Ferdelman, T. G., Mariné, M. H., Teske, A. & Jørgensen, B. B. (1999). Dense populations of a giant sulfur bacterium in Namibian shelf sediments. Science 284, 493-495.
21. Sievert, S. M., Brinkhoff, T., Muyzer, G., Ziebis, W. & Kuever, J. (1999). Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl Environ Microbiol 65, 3834-3842.
22. Sievert, S. M., Kuever, J. & Muyzer, G. (2000). Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl Environ Microbiol 66, 3102-3109.
23. Sorokin, D. Y., Lysenko, A. M., Mityushina, L. L., Tourova, T. P., Jones, B. E., Rainey, F. A., Robertson, L. A. & Kuenen, G. J. (2001). Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp. nov., novel and Thioalkalivibrio denitrificancs sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic sulfur-oxidizing bacteria from soda lakes. Int J Syst Evol Microbiol 51, 565-580.
24. Stockdale, A., Davison, W. & Zhang, H. (2009). Micro-scale biogeochemical heterogeneity in sediments: a review of available technology and observed evidence. Earth Sci Rev 92, 81-97.
25. Takai, K., Hirayama, H., Nakagawa, T., Suzuki, Y., Nealson, K. H. & Horikoshi, K. (2004). Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana Arc, Western Pacific. Int J Syst Evol Microbiol 54, 2325-2333.
26. Teske, A., Brinkhoff, T., Muyzer, G., Moser, D. P., Rethmeier, J. & Jannasch, H. W. (2000). Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents. Appl Environ Microbiol 66, 3125-3133.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
28. Tindall, B. J. (1990a). A comparative-study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
29. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacu-sprofundi. FEMS Microbiol Lett 66, 199-202.
30. Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
31. Vetriani, C., Speck, M. D., Ellor, S. V., Lutz, R. A. & Starovoytov, V. (2004). Thermovibrio ammonificans sp. nov., a thermophilic, chemolithotrophic, nitrate-ammonifying bacterium from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 54, 175-181.
32. Voordeckers, J. W., Starovoytov, V. & Vetriani, C. (2005). Caminibacter mediatlanticus sp. nov., a thermophilic, chemolitho-autotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 55, 773-779.
33. Wenzhöfer, F., Holby, O., Glud, R. N. A., Nielsen, H. K. & Gundersen, J. K. (2000). In situ microsensor studies of a shallow water hydrothermal vent at Milos, Greece. Mar Chem 69, 43-54.
34. Wirsen, C. O., Brinkhoff, T., Kuever, J., Muyzer, G., Molyneaux, S. & Jannasch, H. W. (1998). Comparison of a new Thiomicrospira strain from the mid-Atlantic ridge with known hydrothermal vent isolates. Appl Environ Microbiol 64, 4057-4059.