-
1
-
-
33645285325
-
Peaking of World Oil Production and Its Mitigation
-
Hirsch RL, Bezdek R, Wendling R, (2006) Peaking of World Oil Production and Its Mitigation. AIChE Journal 52: 2-8.
-
(2006)
AIChE Journal
, vol.52
, pp. 2-8
-
-
Hirsch, R.L.1
Bezdek, R.2
Wendling, R.3
-
2
-
-
48649108016
-
Towards sustainable production of biofuels from microalgae
-
Patil V, Tran KQ, Giselrod HR, (2008) Towards sustainable production of biofuels from microalgae. Int J Mol Sci 9: 1188-1195.
-
(2008)
Int J Mol Sci
, vol.9
, pp. 1188-1195
-
-
Patil, V.1
Tran, K.Q.2
Giselrod, H.R.3
-
3
-
-
33746173718
-
Can biofuels finally take center stage?
-
Schubert C, (2006) Can biofuels finally take center stage? Nat Biotechnol 24: 777-784.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 777-784
-
-
Schubert, C.1
-
4
-
-
31544452808
-
The path forward for biofuels and biomaterials
-
Ragauskas AJ, Williams CK, Davison BH, Britovsek G, Cairney J, et al. (2006) The path forward for biofuels and biomaterials. Science 311: 484-489.
-
(2006)
Science
, vol.311
, pp. 484-489
-
-
Ragauskas, A.J.1
Williams, C.K.2
Davison, B.H.3
Britovsek, G.4
Cairney, J.5
-
5
-
-
31344466197
-
Conditions for the sustainability of biomass based fuel use
-
Reijnders L, (2006) Conditions for the sustainability of biomass based fuel use. Energy Policy 34: 863-876.
-
(2006)
Energy Policy
, vol.34
, pp. 863-876
-
-
Reijnders, L.1
-
6
-
-
58649092141
-
Food Versus Biofuels: Environmental and Economic Costs
-
Pimentel D, Marklein A, Toth MA, Karpoff MN, Paul GS, et al. (2009) Food Versus Biofuels: Environmental and Economic Costs. Hum Ecol 37: 12.
-
(2009)
Hum Ecol
, vol.37
, pp. 12
-
-
Pimentel, D.1
Marklein, A.2
Toth, M.A.3
Karpoff, M.N.4
Paul, G.S.5
-
7
-
-
67349169778
-
Yarrowia lipolytica: A model and a tool to understand the mechanisms implicated in lipid accumulation
-
Beopoulos A, Chardot T, Nicaud JM, (2009) Yarrowia lipolytica: A model and a tool to understand the mechanisms implicated in lipid accumulation. Biochimie 91: 692-696.
-
(2009)
Biochimie
, vol.91
, pp. 692-696
-
-
Beopoulos, A.1
Chardot, T.2
Nicaud, J.M.3
-
8
-
-
34248570203
-
High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture
-
Li Y, Zhao Z, Bai F, (2007) High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture. Enzyme and Microbial Technology 41: 312-317.
-
(2007)
Enzyme and Microbial Technology
, vol.41
, pp. 312-317
-
-
Li, Y.1
Zhao, Z.2
Bai, F.3
-
9
-
-
67349104744
-
Microbial and algal oils: Do they have a future for biodiesel or as commodity oils?
-
Ratledge C, Cohen Z, (2008) Microbial and algal oils: Do they have a future for biodiesel or as commodity oils? Lipid Technology 20: 155-160.
-
(2008)
Lipid Technology
, vol.20
, pp. 155-160
-
-
Ratledge, C.1
Cohen, Z.2
-
10
-
-
77249149861
-
Biofuel production in Escherichia coli: the role of metabolic engineering and synthetic biology
-
Clomburg JM, Gonzalez R, (2010) Biofuel production in Escherichia coli: the role of metabolic engineering and synthetic biology. Appl Microbiol Biotechnol 86: 419-434.
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 419-434
-
-
Clomburg, J.M.1
Gonzalez, R.2
-
11
-
-
0030925208
-
Physiology and genetics of the dimorphic fungus Yarrowia lipolytica
-
Barth G, Gaillardin C, (1997) Physiology and genetics of the dimorphic fungus Yarrowia lipolytica. FEMS Microbiol Rev 19: 219-237.
-
(1997)
FEMS Microbiol Rev
, vol.19
, pp. 219-237
-
-
Barth, G.1
Gaillardin, C.2
-
12
-
-
0034805867
-
Isolation and characterization of acetoacetyl-CoA thiolase gene essential for n-decane assimilation in yeast Yarrowia lipolytica
-
Yamagami S, Iida T, Nagata Y, Ohta A, Takagi M, (2001) Isolation and characterization of acetoacetyl-CoA thiolase gene essential for n-decane assimilation in yeast Yarrowia lipolytica. Biochem Biophys Res Commun 282: 832-838.
-
(2001)
Biochem Biophys Res Commun
, vol.282
, pp. 832-838
-
-
Yamagami, S.1
Iida, T.2
Nagata, Y.3
Ohta, A.4
Takagi, M.5
-
13
-
-
70350205608
-
Yarrowia lipolytica as a model for bio-oil production
-
Beopoulos A, Cescut J, Haddouche R, Uribelarrea J-L, Molina-Jouve C, et al. (2009) Yarrowia lipolytica as a model for bio-oil production. Progress in Lipid Research 48: 375-387.
-
(2009)
Progress in Lipid Research
, vol.48
, pp. 375-387
-
-
Beopoulos, A.1
Cescut, J.2
Haddouche, R.3
Uribelarrea, J.-L.4
Molina-Jouve, C.5
-
14
-
-
3042720475
-
Genome evolution in yeasts
-
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, et al. (2004) Genome evolution in yeasts. Nature 430: 35-44.
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregola, S.5
-
15
-
-
71949116012
-
First complex omic study of alkane-binding protein complexes in the yeast Yarrowia lipolytica
-
Lasserre JP, Nicaud JM, Pagot Y, Joubert-Caron R, Caron M, et al. (2010) First complex omic study of alkane-binding protein complexes in the yeast Yarrowia lipolytica. Talanta 80: 1576-1585.
-
(2010)
Talanta
, vol.80
, pp. 1576-1585
-
-
Lasserre, J.P.1
Nicaud, J.M.2
Pagot, Y.3
Joubert-Caron, R.4
Caron, M.5
-
16
-
-
79959946634
-
Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism
-
Saha R, Suthers PF, Maranas CD, (2011) Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism. PLoS ONE 6: e21784.
-
(2011)
PLoS ONE
, vol.6
-
-
Saha, R.1
Suthers, P.F.2
Maranas, C.D.3
-
17
-
-
78651467275
-
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
-
Thiele I, Hyduke DR, Steeb B, Fankam G, Allen DK, et al. (2011) A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst Biol 5: 8.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 8
-
-
Thiele, I.1
Hyduke, D.R.2
Steeb, B.3
Fankam, G.4
Allen, D.K.5
-
18
-
-
77954736119
-
Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production
-
Roberts SB, Gowen CM, Brooks JP, Fong SS, (2010) Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production. BMC Syst Biol 4: 31.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 31
-
-
Roberts, S.B.1
Gowen, C.M.2
Brooks, J.P.3
Fong, S.S.4
-
20
-
-
65649105134
-
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
-
Raghunathan A, Reed J, Shin S, Palsson B, Daefler S (2009) Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction. BMC Systems Biology 3: 16.
-
(2009)
BMC Systems Biology
, vol.3
, pp. 16
-
-
Raghunathan, A.1
Reed, J.2
Shin, S.3
Palsson, B.4
Daefler, S.5
-
21
-
-
52649105455
-
The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism
-
Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, et al. (2008) The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC Systems Biology 2: 15.
-
(2008)
BMC Systems Biology
, vol.2
, pp. 15
-
-
Nookaew, I.1
Jewett, M.C.2
Meechai, A.3
Thammarongtham, C.4
Laoteng, K.5
-
22
-
-
78349292275
-
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium
-
Montagud A, Navarro E, Fernandez de Cordoba P, Urchueguia JF, Patil KR, (2010) Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium. BMC Syst Biol 4: 156.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 156
-
-
Montagud, A.1
Navarro, E.2
Fernandez de Cordoba, P.3
Urchueguia, J.F.4
Patil, K.R.5
-
23
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
Edwards JS, Palsson BO, (2000) The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities. Proc Natl Acad Sci 97: 6.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 6
-
-
Edwards, J.S.1
Palsson, B.O.2
-
24
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele I, Palsson BO, (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat Protoc 5: 93-121.
-
(2010)
Nat Protoc
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
25
-
-
20644467467
-
Systems biotechnology for strain improvement
-
Lee SY, Lee DY, Kim TY, (2005) Systems biotechnology for strain improvement. Trends Biotechnol 23: 349-358.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 349-358
-
-
Lee, S.Y.1
Lee, D.Y.2
Kim, T.Y.3
-
26
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: 480-484.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 480-484
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
-
27
-
-
77951612556
-
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
-
Schellenberger J, Park JO, Conrad TM, Palsson BO, (2010) BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics 11: 213.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 213
-
-
Schellenberger, J.1
Park, J.O.2
Conrad, T.M.3
Palsson, B.O.4
-
28
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, et al. (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Molecular Systems Biology 3: 18.
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 18
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
-
29
-
-
65649126379
-
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
-
Mo ML, Palsson BO, Herrgard MJ, (2009) Connecting extracellular metabolomic measurements to intracellular flux states in yeast. BMC Syst Biol 3: 37.
-
(2009)
BMC Syst Biol
, vol.3
, pp. 37
-
-
Mo, M.L.1
Palsson, B.O.2
Herrgard, M.J.3
-
30
-
-
0027495624
-
Cloning of the isocitrate lyase gene (ICL1) from Yarrowia lipolytica and characterization of the deduced protein
-
Barth G, Scheuber T, (1993) Cloning of the isocitrate lyase gene (ICL1) from Yarrowia lipolytica and characterization of the deduced protein. Mol Gen Genet 241: 422-430.
-
(1993)
Mol Gen Genet
, vol.241
, pp. 422-430
-
-
Barth, G.1
Scheuber, T.2
-
31
-
-
0036185304
-
Genetic control of extracellular protease synthesis in the yeast Yarrowia lipolytica
-
Gonzalez-Lopez CI, Szabo R, Blanchin-Roland S, Gaillardin C, (2002) Genetic control of extracellular protease synthesis in the yeast Yarrowia lipolytica. Genetics 160: 417-427.
-
(2002)
Genetics
, vol.160
, pp. 417-427
-
-
Gonzalez-Lopez, C.I.1
Szabo, R.2
Blanchin-Roland, S.3
Gaillardin, C.4
-
32
-
-
32944467959
-
Influence of glucose and saturated free-fatty acid mixtures on citric acid and lipid production by Yarrowia lipolytica
-
Papanikolaou S, Galiotou-Panayotou M, Chevalot I, Komaitis M, Marc I, et al. (2006) Influence of glucose and saturated free-fatty acid mixtures on citric acid and lipid production by Yarrowia lipolytica. Curr Microbiol 52: 134-142.
-
(2006)
Curr Microbiol
, vol.52
, pp. 134-142
-
-
Papanikolaou, S.1
Galiotou-Panayotou, M.2
Chevalot, I.3
Komaitis, M.4
Marc, I.5
-
34
-
-
0036138566
-
Lipid production by Yarrowia lipolytica growing on industrial glycerol in a single-stage continuous culture
-
Papanikolaou S, Aggelis G, (2002) Lipid production by Yarrowia lipolytica growing on industrial glycerol in a single-stage continuous culture. Bioresource Technology 82: 43-49.
-
(2002)
Bioresource Technology
, vol.82
, pp. 43-49
-
-
Papanikolaou, S.1
Aggelis, G.2
-
35
-
-
0036001069
-
Metabolic modelling of microbes: the flux-balance approach
-
Edwards JS, Covert M, Palsson B, (2002) Metabolic modelling of microbes: the flux-balance approach. Environ Microbiol 4: 133-140.
-
(2002)
Environ Microbiol
, vol.4
, pp. 133-140
-
-
Edwards, J.S.1
Covert, M.2
Palsson, B.3
-
36
-
-
84863075976
-
In Silico Insights into the Symbiotic Nitrogen Fixation in Sinorhizobium meliloti via Metabolic Reconstruction
-
Zhao H, Li M, Fang K, Chen W, Wang J, (2012) In Silico Insights into the Symbiotic Nitrogen Fixation in Sinorhizobium meliloti via Metabolic Reconstruction. PLoS ONE 7: e31287.
-
(2012)
PLoS ONE
, vol.7
-
-
Zhao, H.1
Li, M.2
Fang, K.3
Chen, W.4
Wang, J.5
-
38
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
-
Becker SA, Feist AM, Mo ML, Hannum G, Palsson BO, et al. (2007) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protoc 2: 727-738.
-
(2007)
Nat Protoc
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.O.5
-
39
-
-
5044232363
-
Use of Yarrowia lipolytica strains for the treatment of olive mill wastewater
-
Lanciotti R, Gianotti A, Baldi D, Angrisani R, Suzzi G, et al. (2005) Use of Yarrowia lipolytica strains for the treatment of olive mill wastewater. Bioresource Technology 96: 317-322.
-
(2005)
Bioresource Technology
, vol.96
, pp. 317-322
-
-
Lanciotti, R.1
Gianotti, A.2
Baldi, D.3
Angrisani, R.4
Suzzi, G.5
-
40
-
-
84859605479
-
Yarrowia van der Walt & von Arx (1980)
-
In: Kurtzman CP, Fell JW, Boekhout T, editors, 5 ed. New York: Elsevier
-
Kurtzman CP (2011) Yarrowia van der Walt & von Arx (1980). In: Kurtzman CP, Fell JW, Boekhout T, editors. The Yeasts, A Taxonomic Study. 5 ed. New York: Elsevier. 927-929.
-
(2011)
The Yeasts, A Taxonomic Study
, pp. 927-929
-
-
Kurtzman, C.P.1
-
41
-
-
77957117220
-
Computationally efficient flux variability analysis
-
Gudmundsson S, Thiele I, (2010) Computationally efficient flux variability analysis. BMC Bioinformatics 11: 489.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 489
-
-
Gudmundsson, S.1
Thiele, I.2
-
42
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan R, Schilling CH, (2003) The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng 5: 264-276.
-
(2003)
Metab Eng
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
43
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist AM, Herrgard MJ, Thiele I, Reed JL, Palsson BO, (2009) Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol 7: 129-143.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.O.5
-
44
-
-
0038699639
-
Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis
-
Voit EO, (2003) Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis. J Theor Biol 223: 55-78.
-
(2003)
J Theor Biol
, vol.223
, pp. 55-78
-
-
Voit, E.O.1
-
46
-
-
0029973561
-
A yeast acetyl coenzyme A carboxylase mutant links very-long-chain fatty acid synthesis to the structure and function of the nuclear membrane-pore complex
-
Schneiter R, Hitomi M, Ivessa AS, Fasch EV, Kohlwein SD, et al. (1996) A yeast acetyl coenzyme A carboxylase mutant links very-long-chain fatty acid synthesis to the structure and function of the nuclear membrane-pore complex. Mol Cell Biol 16: 7161-7172.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 7161-7172
-
-
Schneiter, R.1
Hitomi, M.2
Ivessa, A.S.3
Fasch, E.V.4
Kohlwein, S.D.5
-
47
-
-
0018292894
-
Involvement of long-chain acyl coenzyme A for lipid synthesis in repression of acetyl-coenzyme A carboxylase in Candida lipolytica
-
Kamiryo T, Nishikawa Y, Mishina M, Terao M, Numa S, (1979) Involvement of long-chain acyl coenzyme A for lipid synthesis in repression of acetyl-coenzyme A carboxylase in Candida lipolytica. Proc Natl Acad Sci U S A 76: 4390-4394.
-
(1979)
Proc Natl Acad Sci U S A
, vol.76
, pp. 4390-4394
-
-
Kamiryo, T.1
Nishikawa, Y.2
Mishina, M.3
Terao, M.4
Numa, S.5
-
48
-
-
53749085229
-
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
-
Herrgard MJ, Swainston N, Dobson P, Dunn WB, Arga KY, et al. (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat Biotechnol 26: 1155-1160.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1155-1160
-
-
Herrgard, M.J.1
Swainston, N.2
Dobson, P.3
Dunn, W.B.4
Arga, K.Y.5
-
49
-
-
84860505042
-
A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica
-
Loira N, Dulermo T, Nicaud JM, Sherman DJ, (2012) A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica. BMC Syst Biol 6: 35.
-
(2012)
BMC Syst Biol
, vol.6
, pp. 35
-
-
Loira, N.1
Dulermo, T.2
Nicaud, J.M.3
Sherman, D.J.4
|