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Volumn 8, Issue 11, 2012, Pages

Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BOVINE TUBERCULOSIS; CATTLE; CONSENSUS SEQUENCE; DISEASE TRANSMISSION; DNA EXTRACTION; EXPOSURE; GENE DOSAGE; GENE SEQUENCE; GENETIC DISTANCE; HERD; HISTOLOGY; LIFE HISTORY; MATHEMATICAL MODEL; MAXIMUM LIKELIHOOD METHOD; MYCOBACTERIUM BOVIS; NONHUMAN; PHYLOGENY; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; TUBERCULIN TEST; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 84870841492     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003008     Document Type: Article
Times cited : (140)

References (46)
  • 1
    • 75649084906 scopus 로고    scopus 로고
    • Evolution of MRSA During Hospital Transmission and Intercontinental Spread
    • Harris SR, Feil EJ, Holden MTG, Quail MA, Nickerson EK, et al. (2010) Evolution of MRSA During Hospital Transmission and Intercontinental Spread. Science 327: 469-474.
    • (2010) Science , vol.327 , pp. 469-474
    • Harris, S.R.1    Feil, E.J.2    Holden, M.T.G.3    Quail, M.A.4    Nickerson, E.K.5
  • 2
    • 78649470145 scopus 로고    scopus 로고
    • Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
    • Morelli G, Song YJ, Mazzoni CJ, Eppinger M, Roumagnac P, et al. (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet 42: 1140-3.
    • (2010) Nat Genet , vol.42 , pp. 1140-1143
    • Morelli, G.1    Song, Y.J.2    Mazzoni, C.J.3    Eppinger, M.4    Roumagnac, P.5
  • 3
    • 79955460244 scopus 로고    scopus 로고
    • Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
    • Ford CB, Lin PL, Chase MR, Shah RR, Iartchouk O, et al. (2011) Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection. Nat Genet 43: 482-486.
    • (2011) Nat Genet , vol.43 , pp. 482-486
    • Ford, C.B.1    Lin, P.L.2    Chase, M.R.3    Shah, R.R.4    Iartchouk, O.5
  • 4
    • 72449138052 scopus 로고    scopus 로고
    • The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale
    • Schürcha AC, Kremer K, Kiers A, Davienaa O, Boereec MJ, et al. (2010) The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale. Infect Genet Evol 10: 108-114.
    • (2010) Infect Genet Evol , vol.10 , pp. 108-114
    • Schürcha, A.C.1    Kremer, K.2    Kiers, A.3    Davienaa, O.4    Boereec, M.J.5
  • 5
    • 79951995822 scopus 로고    scopus 로고
    • Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
    • Gardy JL, Johnston JC, Sui SJH, Cook VJ, Shah LN, et al. (2011) Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak. N Engl J Med 364: 730-739.
    • (2011) N Engl J Med , vol.364 , pp. 730-739
    • Gardy, J.L.1    Johnston, J.C.2    Sui, S.J.H.3    Cook, V.J.4    Shah, L.N.5
  • 6
    • 40049112232 scopus 로고    scopus 로고
    • Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus
    • Cottam EM, Thebaud G, Wadsworth J, Gloster J, Mansley L, et al. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc R Soc Lond B Biol Sci 275: 887-895.
    • (2008) Proc R Soc Lond B Biol Sci , vol.275 , pp. 887-895
    • Cottam, E.M.1    Thebaud, G.2    Wadsworth, J.3    Gloster, J.4    Mansley, L.5
  • 7
    • 33845879635 scopus 로고    scopus 로고
    • Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans
    • Koelle K, Cobey S, Grenfell B, Pascual M, (2006) Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans. Science 314: 1898-1903.
    • (2006) Science , vol.314 , pp. 1898-1903
    • Koelle, K.1    Cobey, S.2    Grenfell, B.3    Pascual, M.4
  • 9
    • 70350476886 scopus 로고    scopus 로고
    • Discovering the phylodynamics of RNA viruses
    • Holmes EC, Grenfell BT, (2009) Discovering the phylodynamics of RNA viruses. PLoS Comput Biol 5: e1000505.
    • (2009) PLoS Comput Biol , vol.5
    • Holmes, E.C.1    Grenfell, B.T.2
  • 11
    • 34047244736 scopus 로고    scopus 로고
    • Cluster of human tuberculosis caused by Mycobacterium bovis: evidence for person-to-person transmission in the UK
    • Evans JT, Smith EG, Banerjee A, Smith RM, Dale J, et al. (2007) Cluster of human tuberculosis caused by Mycobacterium bovis: evidence for person-to-person transmission in the UK. Lancet 369: 1270-1276.
    • (2007) Lancet , vol.369 , pp. 1270-1276
    • Evans, J.T.1    Smith, E.G.2    Banerjee, A.3    Smith, R.M.4    Dale, J.5
  • 13
    • 84871850890 scopus 로고    scopus 로고
    • The killing fields
    • Anon
    • Anon (2010) The killing fields. Nature 467: 368-368.
    • (2010) Nature , vol.467 , pp. 368
  • 14
    • 79955638046 scopus 로고    scopus 로고
    • One body of evidence, three different policies: bovine tuberculosis policy in Britain
    • Spencer A, (2011) One body of evidence, three different policies: bovine tuberculosis policy in Britain. Politics 31: 91-99.
    • (2011) Politics , vol.31 , pp. 91-99
    • Spencer, A.1
  • 16
    • 79952276079 scopus 로고    scopus 로고
    • Mycobacterium bovis genotypes in Northern Ireland: herd-level surveillance (2003 to 2008
    • Skuce RA, Mallon TR, McCormick CM, McBride SH, Clarke G, et al. (2010) Mycobacterium bovis genotypes in Northern Ireland: herd-level surveillance (2003 to 2008). Vet Rec 167: 684-689.
    • (2010) Vet Rec , vol.167 , pp. 684-689
    • Skuce, R.A.1    Mallon, T.R.2    McCormick, C.M.3    McBride, S.H.4    Clarke, G.5
  • 17
    • 65249101581 scopus 로고    scopus 로고
    • Bovine Tuberculosis in Cattle and Badgers in Localized Culling Areas
    • Woodroffe R, Donnelly CA, Cox DR, Gilks P, Jenkins HE, et al. (2009) Bovine Tuberculosis in Cattle and Badgers in Localized Culling Areas. J Wildl Dis 45: 128-143.
    • (2009) J Wildl Dis , vol.45 , pp. 128-143
    • Woodroffe, R.1    Donnelly, C.A.2    Cox, D.R.3    Gilks, P.4    Jenkins, H.E.5
  • 18
    • 0030789138 scopus 로고    scopus 로고
    • A model of bovine tuberculosis control in domesticated cattle herds
    • Kao RR, Roberts MG, Ryan TJ, (1997) A model of bovine tuberculosis control in domesticated cattle herds. Proc R Soc Lond B Biol Sci 264: 1069-1076.
    • (1997) Proc R Soc Lond B Biol Sci , vol.264 , pp. 1069-1076
    • Kao, R.R.1    Roberts, M.G.2    Ryan, T.J.3
  • 20
    • 77956890234 scopus 로고
    • Monte Carlo Sampling Methods Using Markov Chains and Their Applications
    • Hastings WK, (1970) Monte Carlo Sampling Methods Using Markov Chains and Their Applications. Biometrika 57: 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 23
    • 40549114598 scopus 로고    scopus 로고
    • Estimates for local and movement-based transmission of bovine tuberculosis in British cattle
    • Green DM, Kiss IZ, Mitchell AP, Kao RR, (2008) Estimates for local and movement-based transmission of bovine tuberculosis in British cattle. Proc R Soc Lond B Biol Sci 275: 1001-1005.
    • (2008) Proc R Soc Lond B Biol Sci , vol.275 , pp. 1001-1005
    • Green, D.M.1    Kiss, I.Z.2    Mitchell, A.P.3    Kao, R.R.4
  • 24
    • 79952789801 scopus 로고    scopus 로고
    • London: Harper Collins
    • Roper TJ (2010) Badger. London: Harper Collins.
    • (2010) Badger
    • Roper, T.J.1
  • 25
    • 33748633844 scopus 로고    scopus 로고
    • Is Mycobacterium bovis in the environment important for the persistence of bovine tuberculosis?
    • Courtenay O, Reilly LA, Sweeney FP, Hibberd V, Bryan S, et al. (2006) Is Mycobacterium bovis in the environment important for the persistence of bovine tuberculosis? Biol Lett 2: 460-462.
    • (2006) Biol Lett , vol.2 , pp. 460-462
    • Courtenay, O.1    Reilly, L.A.2    Sweeney, F.P.3    Hibberd, V.4    Bryan, S.5
  • 29
  • 30
    • 34247152126 scopus 로고    scopus 로고
    • Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development
    • Gagneux S, Small PM, (2007) Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect Dis 7: 328-337.
    • (2007) Lancet Infect Dis , vol.7 , pp. 328-337
    • Gagneux, S.1    Small, P.M.2
  • 31
    • 58149174244 scopus 로고    scopus 로고
    • High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography
    • Hershberg R, Lipatov M, Small PM, Sheffer H, Niemann S, et al. (2008) High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol 6: 2658-2671.
    • (2008) PLoS Biol , vol.6 , pp. 2658-2671
    • Hershberg, R.1    Lipatov, M.2    Small, P.M.3    Sheffer, H.4    Niemann, S.5
  • 32
    • 27844588457 scopus 로고    scopus 로고
    • Discrimination of isolates of Mycobacterium bovis in Northern Ireland on the basis of variable numbers of tandem repeats (VNTRS)
    • Skuce RA, McDowell SW, Mallon TR, Luke B, Breadon EL, et al. (2005) Discrimination of isolates of Mycobacterium bovis in Northern Ireland on the basis of variable numbers of tandem repeats (VNTRS). Vet Rec 157: 501-504.
    • (2005) Vet Rec , vol.157 , pp. 501-504
    • Skuce, R.A.1    McDowell, S.W.2    Mallon, T.R.3    Luke, B.4    Breadon, E.L.5
  • 33
    • 0035648479 scopus 로고    scopus 로고
    • A computerised database system for bovine traceability
    • Houston R, (2001) A computerised database system for bovine traceability. Rev Sci Tech 20: 652-661.
    • (2001) Rev Sci Tech , vol.20 , pp. 652-661
    • Houston, R.1
  • 37
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: multiple alignment of conserved genomic sequence with rearrangements
    • Darling AC, Mau B, Blattner FR, Perna NT, (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14: 1394-1403.
    • (2004) Genome Res , vol.14 , pp. 1394-1403
    • Darling, A.C.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 38
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol pp. 52696-52704.
    • (2003) Syst Biol , pp. 52696-52704
    • Guindon, S.1    Gascuel, O.2
  • 39
    • 0031227009 scopus 로고    scopus 로고
    • A simulation model for the spread of bovine tuberculosis within New Zealand cattle herds
    • doi:10.1016/S0167-5877(97)00002-0
    • Barlow ND, Kean JM, Hickling G, Livingstone PG, Robson AB, (1997) A simulation model for the spread of bovine tuberculosis within New Zealand cattle herds. Prev Vet Med 32: 57-75 doi: 10.1016/S0167-5877(97)00002-0.
    • (1997) Prev Vet Med , vol.32 , pp. 57-75
    • Barlow, N.D.1    Kean, J.M.2    Hickling, G.3    Livingstone, P.G.4    Robson, A.B.5
  • 40
    • 80053560629 scopus 로고    scopus 로고
    • Mathematical analysis of a model for the transmission dynamics of bovine tuberculosis
    • Agusto FB, Lenhart S, Gumel AB, Odoi A, (2011) Mathematical analysis of a model for the transmission dynamics of bovine tuberculosis. Math Meth Appl Sci 34: 1873-1887 DOI: 10.1002/mma.1486.
    • (2011) Math Meth Appl Sci , vol.34 , pp. 1873-1887
    • Agusto, F.B.1    Lenhart, S.2    Gumel, A.B.3    Odoi, A.4
  • 41
    • 0034991783 scopus 로고    scopus 로고
    • Cattle-to-cattle transmission of Mycobacterium bovis
    • Goodchild AV, Clifton-Hadley RS, (2001) Cattle-to-cattle transmission of Mycobacterium bovis. Tuberculosis 81: 23-41 DOI: 10.1054/tube.2000.025641.
    • (2001) Tuberculosis , vol.81 , pp. 23-41
    • Goodchild, A.V.1    Clifton-Hadley, R.S.2
  • 42
    • 42649138862 scopus 로고    scopus 로고
    • Generation interval contraction and epidemic data analysis
    • Kenah E, Lipsitch M, Robins JM, (2008) Generation interval contraction and epidemic data analysis. Math Biosci 213 (1): 71-9.
    • (2008) Math Biosci , vol.213 , Issue.1 , pp. 71-79
    • Kenah, E.1    Lipsitch, M.2    Robins, J.M.3
  • 43
    • 33745184046 scopus 로고    scopus 로고
    • Ante mortem diagnosis of tuberculosis in cattle: a review of the tuberculin tests, gamma-interferon assay and other ancillary diagnostic techniques
    • de la Rua-Domenech R, Goodchild AT, Vordermeier HM, Hewinson RG, Christiansen KH, et al. (2006) Ante mortem diagnosis of tuberculosis in cattle: a review of the tuberculin tests, gamma-interferon assay and other ancillary diagnostic techniques. Research in Veterinary Science 81: 190-210.
    • (2006) Research in Veterinary Science , vol.81 , pp. 190-210
    • de la Rua-Domenech, R.1    Goodchild, A.T.2    Vordermeier, H.M.3    Hewinson, R.G.4    Christiansen, K.H.5
  • 44
    • 33748939626 scopus 로고    scopus 로고
    • The effect of tuberculin testing on the development of cell-mediated immune responses during Mycobacterium bovis infection
    • Thom ML, Hope JC, McAulay M, Villarreal-Ramos B, Coffey TJ, et al. (2006) The effect of tuberculin testing on the development of cell-mediated immune responses during Mycobacterium bovis infection. Vet Immunol Immunopathol 114: 25-36.
    • (2006) Vet Immunol Immunopathol , vol.114 , pp. 25-36
    • Thom, M.L.1    Hope, J.C.2    McAulay, M.3    Villarreal-Ramos, B.4    Coffey, T.J.5
  • 45
    • 0027122805 scopus 로고
    • Isolation of Mycobacterium bovis from the respiratory tracts of skin test-negative cattle
    • Neill S, Hanna J, Mackie D, Bryson T, (1992) Isolation of Mycobacterium bovis from the respiratory tracts of skin test-negative cattle. Vet Rec 131: 45-47.
    • (1992) Vet Rec , vol.131 , pp. 45-47
    • Neill, S.1    Hanna, J.2    Mackie, D.3    Bryson, T.4
  • 46
    • 0004286902 scopus 로고    scopus 로고
    • Indianapolis, Indiana: Addison Wesley
    • Sedgewick R (2001) Algorithms in C++. Indianapolis, Indiana: Addison Wesley.
    • (2001) Algorithms in C++
    • Sedgewick, R.1


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