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Volumn 6, Issue , 2005, Pages

Limitations of mRNA amplification from small-size cell samples

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; COMPLEMENTARY DNA; PRIMER DNA; RNA;

EID: 27744504822     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-147     Document Type: Article
Times cited : (37)

References (54)
  • 1
    • 0036303543 scopus 로고    scopus 로고
    • The Feasibility of Using Fine Needle Aspiration from Primary Breast Cancers for cDNA Microarray Analyses
    • Assersohn L, Gangi L, Zhao Y, Dowsett M, Simon R, Powles TJ, Liu ET: The Feasibility of Using Fine Needle Aspiration from Primary Breast Cancers for cDNA Microarray Analyses Clin Cancer Res 2002, 8: 794-801.
    • (2002) Clin. Cancer Res. , vol.8 , pp. 794-801
    • Assersohn, L.1    Gangi, L.2    Zhao, Y.3    Dowsett, M.4    Simon, R.5    Powles, T.J.6    Liu, E.T.7
  • 5
    • 0036713497 scopus 로고    scopus 로고
    • Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA
    • Iscove NN, Barbara M, Gu M, Gibson M, Modi C, Winegarden N: Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA Nat Biotechnol 2002.
    • (2002) Nat. Biotechnol.
    • Iscove, N.N.1    Barbara, M.2    Gu, M.3    Gibson, M.4    Modi, C.5    Winegarden, N.6
  • 6
    • 0036281003 scopus 로고    scopus 로고
    • RNA amplification results in reproducible microarray data with slight ratio bias
    • 1338, 1336, 1340
    • Puskas LG, Zvara A, Hackler L, Jr., Van Hummelen P: RNA amplification results in reproducible microarray data with slight ratio bias Biotechniques 2002, 32: 1330-1334, 1336, 1338, 1340.
    • (2002) Biotechniques , vol.32 , pp. 1330-1334
    • Puskas, L.G.1    Zvara, A.2    Hackler Jr., L.3    Van Hummelen, P.4
  • 7
    • 2142822325 scopus 로고    scopus 로고
    • Expression array technology in the diagnosis and treatment of breast cancer
    • Jeffrey SS, Fero MJ, Borresen-Dale AL, Botstein D: Expression array technology in the diagnosis and treatment of breast cancer Mol Interv 2002, 2: 101-109.
    • (2002) Mol. Interv. , vol.2 , pp. 101-109
    • Jeffrey, S.S.1    Fero, M.J.2    Borresen-Dale, A.L.3    Botstein, D.4
  • 8
    • 4644260058 scopus 로고    scopus 로고
    • Optimized RNA amplification using T7-RNA-polymerase based in vitro transcription
    • Moll PR, Duschl J, Richter K: Optimized RNA amplification using T7-RNA-polymerase based in vitro transcription Anal Biochem 2004, 334: 164-174.
    • (2004) Anal. Biochem. , vol.334 , pp. 164-174
    • Moll, P.R.1    Duschl, J.2    Richter, K.3
  • 9
    • 2442712711 scopus 로고    scopus 로고
    • Expression microarray reproducibility is improved by optimising purification steps in RNA amplification and labelling
    • Naderi A, Ahmed AA, Barbosa-Morais NL, Aparicio S, Brenton JD, Caldas C: Expression microarray reproducibility is improved by optimising purification steps in RNA amplification and labelling BMC Genomics 2004, 5: 9.
    • (2004) BMC Genomics , vol.5 , pp. 9
    • Naderi, A.1    Ahmed, A.A.2    Barbosa-Morais, N.L.3    Aparicio, S.4    Brenton, J.D.5    Caldas, C.6
  • 11
    • 85047692008 scopus 로고    scopus 로고
    • Amplification of RNA transcripts using terminal continuation
    • Che S, Ginsberg SD: Amplification of RNA transcripts using terminal continuation Lab invest 2004, 84: 131-137.
    • (2004) Lab. Invest. , vol.84 , pp. 131-137
    • Che, S.1    Ginsberg, S.D.2
  • 13
    • 3042748163 scopus 로고    scopus 로고
    • Microarray analysis in clinical oncology: Pre-clinical Optimization using needle core biopsies from xenograft tumors
    • Goley EM, Anderson SJ, Menard C, Chuang E, Lu X, Tofilon PJ, Camphausen K: Microarray analysis in clinical oncology: pre-clinical optimization using needle core biopsies from xenograft tumors BMC Cancer 2004, 4: 20.
    • (2004) BMC Cancer , vol.4 , pp. 20
    • Goley, E.M.1    Anderson, S.J.2    Menard, C.3    Chuang, E.4    Lu, X.5    Tofilon, P.J.6    Camphausen, K.7
  • 14
    • 0033623153 scopus 로고    scopus 로고
    • Laser capture microdissection-generated target sample for highdensity oligonucleotide array hybridization
    • Ohyama H, Zhang X, Kohno Y, Alevizos I, Posner M, Wong DT, Todd R: Laser capture microdissection-generated target sample for highdensity oligonucleotide array hybridization Biotechniques 2000, 29: 530-536.
    • (2000) Biotechniques , vol.29 , pp. 530-536
    • Ohyama, H.1    Zhang, X.2    Kohno, Y.3    Alevizos, I.4    Posner, M.5    Wong, D.T.6    Todd, R.7
  • 15
    • 1242338879 scopus 로고    scopus 로고
    • Evaluation of procedures for amplification of small-size samples for hybridization on microarrays
    • Klur S, Toy K, Williams MP, Certa U: Evaluation of procedures for amplification of small-size samples for hybridization on microarrays Genomics 2004, 83: 508-517.
    • (2004) Genomics , vol.83 , pp. 508-517
    • Klur, S.1    Toy, K.2    Williams, M.P.3    Certa, U.4
  • 16
    • 1342286839 scopus 로고    scopus 로고
    • Microdissection, mRNA amplification and microarray: A study of pleural mesothelial and malignant mesothelioma cells
    • Mohr S, Bottin MC, Lannes B, Neuville A, Bellocq JP, Keith G, Rihn BH: Microdissection, mRNA amplification and microarray: a study of pleural mesothelial and malignant mesothelioma cells Biochimie 2004, 86: 13-19.
    • (2004) Biochimie , vol.86 , pp. 13-19
    • Mohr, S.1    Bottin, M.C.2    Lannes, B.3    Neuville, A.4    Bellocq, J.P.5    Keith, G.6    Rihn, B.H.7
  • 17
    • 0034965544 scopus 로고    scopus 로고
    • Expression profiling of ductal carcinoma in situ by laser capture microdissection and high-density oligonucleotide arrays
    • Luzzi V, Holtschlag V, Watson MA: Expression profiling of ductal carcinoma in situ by laser capture microdissection and high-density oligonucleotide arrays Am J Pathol 2001, 158: 2005-2010.
    • (2001) Am. J. Pathol. , vol.158 , pp. 2005-2010
    • Luzzi, V.1    Holtschlag, V.2    Watson, M.A.3
  • 18
    • 0035371760 scopus 로고    scopus 로고
    • Profiling of gene expression in individual hematopoietic cells by global mRNA amplification and slot blot analysis
    • Theilgaard-Monch K, Cowland J, Borregaard N: Profiling of gene expression in individual hematopoietic cells by global mRNA amplification and slot blot analysis J Immunol Methods 2001, 252: 175-189.
    • (2001) J. Immunol. Methods , vol.252 , pp. 175-189
    • Theilgaard-Monch, K.1    Cowland, J.2    Borregaard, N.3
  • 20
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and emperical bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smyth G: Linear models and emperical bayes methods for assessing differential expression in microarray experiments Statistical Applications in Genetics and Molecular Biology 2004, 3: Article 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.1
  • 21
    • 0037337914 scopus 로고    scopus 로고
    • Optimized protocol for linear RNA amplification and application to gene expression profiling of human renal biopsies
    • 552-544, 556
    • Scherer A, Krause A, Walker JR, Sutton SE, Seron D, Raulf F, Cooke MP: Optimized protocol for linear RNA amplification and application to gene expression profiling of human renal biopsies Biotechniques 2003, 34: 546-550, 552-544, 556.
    • (2003) Biotechniques , vol.34 , pp. 546-550
    • Scherer, A.1    Krause, A.2    Walker, J.R.3    Sutton, S.E.4    Seron, D.5    Raulf, F.6    Cooke, M.P.7
  • 22
    • 9444231674 scopus 로고    scopus 로고
    • Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations
    • Spiess AN, Mueller N, Ivell R: Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations BMC Genomics 2003, 4: 44.
    • (2003) BMC Genomics , vol.4 , pp. 44
    • Spiess, A.N.1    Mueller, N.2    Ivell, R.3
  • 23
    • 4043086987 scopus 로고    scopus 로고
    • Reliability of t7-based mRNA linear amplification validated by gene expression analysis of human kidney cells using cDNA microarrays
    • Rudnicki M, Eder S, Schratzberger G, Mayer B, Meyer TW, Tonko M, Mayer G: Reliability of t7-based mRNA linear amplification validated by gene expression analysis of human kidney cells using cDNA microarrays Nephron Exp Nephrol 2004,97: e86-95.
    • (2004) Nephron Exp. Nephrol. , vol.97
    • Rudnicki, M.1    Eder, S.2    Schratzberger, G.3    Mayer, B.4    Meyer, T.W.5    Tonko, M.6    Mayer, G.7
  • 25
    • 0345732570 scopus 로고    scopus 로고
    • Systematic comparison of the fidelity of aRNA, mRNA and T-RNA on gene expression profiling using cDNA microarray
    • Li Y, Li T, Liu S, Qiu M, Han Z, Jiang Z, Li R, Ying K, Xie Y, Mao Y: Systematic comparison of the fidelity of aRNA, mRNA and T-RNA on gene expression profiling using cDNA microarray J Biotechnol 2004, 107: 19-28.
    • (2004) J. Biotechnol. , vol.107 , pp. 19-28
    • Li, Y.1    Li, T.2    Liu, S.3    Qiu, M.4    Han, Z.5    Jiang, Z.6    Li, R.7    Ying, K.8    Xie, Y.9    Mao, Y.10
  • 26
    • 23644439004 scopus 로고    scopus 로고
    • A robust method for the amplification of RNA in the sense orientation
    • Marko NF, Frank B, Quackenbush J, Lee NH: A robust method for the amplification of RNA in the sense orientation BMC Genomics 2005, 6: 27.
    • (2005) BMC Genomics , vol.6 , pp. 27
    • Marko, N.F.1    Frank, B.2    Quackenbush, J.3    Lee, N.H.4
  • 28
    • 2442694094 scopus 로고    scopus 로고
    • A comparative analysis of data generated using two different target preparation methods for hybridization to high-density oligonucleotide microarrays
    • Gold D, Coombes K, Medhane D, Ramaswamy A, Ju Z, Strong L, Koo JS, Kapoor M: A comparative analysis of data generated using two different target preparation methods for hybridization to high-density oligonucleotide microarrays BMC Genomics 2004, 5: 2.
    • (2004) BMC Genomics , vol.5 , pp. 2
    • Gold, D.1    Coombes, K.2    Medhane, D.3    Ramaswamy, A.4    Ju, Z.5    Strong, L.6    Koo, J.S.7    Kapoor, M.8
  • 30
    • 14644386823 scopus 로고    scopus 로고
    • Reproducibility, fidelity, and discriminant validity of mRNA amplification for microarray analysis from primary hematopoietic cells
    • Li L, Roden J, Shapiro BE, Wold BJ, Bhatia S, Forman SJ, Bhatia R: Reproducibility, fidelity, and discriminant validity of mRNA amplification for microarray analysis from primary hematopoietic cells J Mol Diagn 2005, 7: 48-56.
    • (2005) J. Mol. Diagn. , vol.7 , pp. 48-56
    • Li, L.1    Roden, J.2    Shapiro, B.E.3    Wold, B.J.4    Bhatia, S.5    Forman, S.J.6    Bhatia, R.7
  • 35
    • 0034758994 scopus 로고    scopus 로고
    • Accuracy in amplification
    • 35 Stenman J, Orpana A: Accuracy in amplification Nat Biotechnol 2001, 19: 1011-1012.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 1011-1012
    • Stenman, J.1    Orpana, A.2
  • 38
    • 12344315892 scopus 로고    scopus 로고
    • A rapid method for computationally inferring transcriptome coverage and microarray sensitivity
    • Reverter A, McWilliam SM, Barris W, Dalrymple BP: A rapid method for computationally inferring transcriptome coverage and microarray sensitivity Bioinformatics 2005, 21: 80-89.
    • (2005) Bioinformatics , vol.21 , pp. 80-89
    • Reverter, A.1    McWilliam, S.M.2    Barris, W.3    Dalrymple, B.P.4
  • 46
    • 27744533850 scopus 로고    scopus 로고
    • The Norwegian Radium Hospital Microarray Core Facility
    • The Norwegian Radium Hospital Microarray Core Facility http:// www.med.uio.no/dnr/microarray/index.html.
  • 47
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation Nucleic Acids Res 2002, 30: e15.
    • (2002) Nucleic Acids Res. , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 48
    • 25144456446 scopus 로고    scopus 로고
    • Estimating the portion of true null hypotheses, with application to DNA microarray data
    • Langaas M, Lindqvist BH, Ferkingstad E: Estimating the portion of true null hypotheses, with application to DNA microarray data J Royal Statistical Soc Series B 2005, 67: 555-572.
    • (2005) J. Royal Statistical Soc. Series B , vol.67 , pp. 555-572
    • Langaas, M.1    Lindqvist, B.H.2    Ferkingstad, E.3
  • 49
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. JRSS 1995, 57: 289-300.
    • (1995) JRSS , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 51
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr MK, Martin M, Churchill GA: Analysis of variance for gene expression microarray data J Comput Biol 2000, 7: 819-837.
    • (2000) J. Comput. Biol. , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 53
    • 0035733752 scopus 로고    scopus 로고
    • The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
    • Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G: The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster Nat Genet 2001, 29: 389-395.
    • (2001) Nat. Genet. , vol.29 , pp. 389-395
    • Jin, W.1    Riley, R.M.2    Wolfinger, R.D.3    White, K.P.4    Passador-Gurgel, G.5    Gibson, G.6
  • 54
    • 27744465713 scopus 로고    scopus 로고
    • Glme: A C-program for parameter estimation using Gibbs-sampling in large linear mixdeffects models, with applications to DNA microarray data
    • Research Report NO.2/2004 Norwegian Computing Center
    • Follestad T, Langaas M, Rue H, Holden M, Losland A: glme: a C-program for parameter estimation using Gibbs-sampling in large linear mixdeffects models, with applications to DNA microarray data. Research Report NO.2/2004 Norwegian Computing Center 2004, 1-20.
    • (2004) , pp. 1-20
    • Follestad, T.1    Langaas, M.2    Rue, H.3    Holden, M.4    Losland, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.