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Volumn 11, Issue , 2011, Pages

Characterization of the stress associated microRNAs in Glycine max by deep sequencing

Author keywords

[No Author keywords available]

Indexed keywords

GLYCINE MAX;

EID: 81555230500     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-11-170     Document Type: Article
Times cited : (159)

References (45)
  • 1
    • 0020458787 scopus 로고
    • Plant productivity and environment
    • Boyer JS. Plant productivity and environment. Science 1982, 218(4571):443-448.
    • (1982) Science , vol.218 , Issue.4571 , pp. 443-448
    • Boyer, J.S.1
  • 2
    • 33745944196 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses
    • Yamaguchi-Shinozaki K, Shinozaki K. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 2006, 57:781-803.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 781-803
    • Yamaguchi-Shinozaki, K.1    Shinozaki, K.2
  • 3
    • 0037782493 scopus 로고    scopus 로고
    • MicroRNAs: at the root of plant development?
    • Bartel B, Bartel DP. MicroRNAs: at the root of plant development?. Plant Physiol 2003, 132(2):709-717.
    • (2003) Plant Physiol , vol.132 , Issue.2 , pp. 709-717
    • Bartel, B.1    Bartel, D.P.2
  • 4
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 5
    • 0344232733 scopus 로고    scopus 로고
    • MicroRNAs: runts of the genome assert themselves
    • Lai EC. microRNAs: runts of the genome assert themselves. Curr Biol 2003, 13(23):R925-936.
    • (2003) Curr Biol , vol.13 , Issue.23
    • Lai, E.C.1
  • 6
    • 0035839105 scopus 로고    scopus 로고
    • RNA: guiding gene silencing
    • Matzke M, Matzke AJ, Kooter JM. RNA: guiding gene silencing. Science 2001, 293(5532):1080-1083.
    • (2001) Science , vol.293 , Issue.5532 , pp. 1080-1083
    • Matzke, M.1    Matzke, A.J.2    Kooter, J.M.3
  • 7
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004, 14(6):787-799.
    • (2004) Mol Cell , vol.14 , Issue.6 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 8
    • 34447550259 scopus 로고    scopus 로고
    • The role of small RNAs in abiotic stress
    • Phillips JR, Dalmay T, Bartels D. The role of small RNAs in abiotic stress. FEBS Lett 2007, 581(19):3592-3597.
    • (2007) FEBS Lett , vol.581 , Issue.19 , pp. 3592-3597
    • Phillips, J.R.1    Dalmay, T.2    Bartels, D.3
  • 10
    • 76049126414 scopus 로고    scopus 로고
    • MiR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
    • Trindade I, Capitao C, Dalmay T, Fevereiro MP, Santos DM. miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta 2010, 231(3):705-716.
    • (2010) Planta , vol.231 , Issue.3 , pp. 705-716
    • Trindade, I.1    Capitao, C.2    Dalmay, T.3    Fevereiro, M.P.4    Santos, D.M.5
  • 11
    • 50649110065 scopus 로고    scopus 로고
    • A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    • Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C. A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res 2008, 18(9):1456-1465.
    • (2008) Genome Res , vol.18 , Issue.9 , pp. 1456-1465
    • Zhu, Q.H.1    Spriggs, A.2    Matthew, L.3    Fan, L.4    Kennedy, G.5    Gubler, F.6    Helliwell, C.7
  • 12
    • 43449107651 scopus 로고    scopus 로고
    • Identification and verification of microRNA in wheat (Triticum aestivum)
    • Jin W, Li N, Zhang B, Wu F, Li W, Guo A, Deng Z. Identification and verification of microRNA in wheat (Triticum aestivum). J Plant Res 2008, 121(3):351-355.
    • (2008) J Plant Res , vol.121 , Issue.3 , pp. 351-355
    • Jin, W.1    Li, N.2    Zhang, B.3    Wu, F.4    Li, W.5    Guo, A.6    Deng, Z.7
  • 13
    • 57749199958 scopus 로고    scopus 로고
    • Differential expression of miRNAs in response to salt stress in maize roots
    • Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y. Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 2009, 103(1):29-38.
    • (2009) Ann Bot , vol.103 , Issue.1 , pp. 29-38
    • Ding, D.1    Zhang, L.2    Wang, H.3    Liu, Z.4    Zhang, Z.5    Zheng, Y.6
  • 14
    • 79957578583 scopus 로고    scopus 로고
    • Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments
    • McCormick KP, Willmann MR, Meyers BC. Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments. Silence 2011, 2(1):2.
    • (2011) Silence , vol.2 , Issue.1 , pp. 2
    • McCormick, K.P.1    Willmann, M.R.2    Meyers, B.C.3
  • 15
    • 78650971549 scopus 로고    scopus 로고
    • Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    • Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 2011, 11:5.
    • (2011) BMC Plant Biol , vol.11 , pp. 5
    • Song, Q.X.1    Liu, Y.F.2    Hu, X.Y.3    Zhang, W.K.4    Ma, B.5    Chen, S.Y.6    Zhang, J.S.7
  • 18
    • 82455187980 scopus 로고    scopus 로고
    • Small RNA transcriptome investigation based on next-generation sequencing technology
    • Zhou LL, Li XM, Liu Q, Zhao FQ, Wu JY. Small RNA transcriptome investigation based on next-generation sequencing technology. J Genet Genomics
    • J Genet Genomics
    • Zhou, L.L.1    Li, X.M.2    Liu, Q.3    Zhao, F.Q.4    Wu, J.Y.5
  • 19
    • 42449092941 scopus 로고    scopus 로고
    • Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata
    • Pandey SP, Shahi P, Gase K, Baldwin IT. Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata. Proc Natl Acad Sci USA 2008, 105(12):4559-4564.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.12 , pp. 4559-4564
    • Pandey, S.P.1    Shahi, P.2    Gase, K.3    Baldwin, I.T.4
  • 20
    • 77749264610 scopus 로고    scopus 로고
    • Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
    • Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutierrez RA. Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci USA 2010, 107(9):4477-4482.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.9 , pp. 4477-4482
    • Vidal, E.A.1    Araus, V.2    Lu, C.3    Parry, G.4    Green, P.J.5    Coruzzi, G.M.6    Gutierrez, R.A.7
  • 24
    • 77249116710 scopus 로고    scopus 로고
    • Identification of microRNAs in wild soybean (Glycine soja)
    • Chen R, Hu Z, Zhang H. Identification of microRNAs in wild soybean (Glycine soja). J Integr Plant Biol 2009, 51(12):1071-1079.
    • (2009) J Integr Plant Biol , vol.51 , Issue.12 , pp. 1071-1079
    • Chen, R.1    Hu, Z.2    Zhang, H.3
  • 25
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 2001, 294(5543):853-858.
    • (2001) Science , vol.294 , Issue.5543 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 26
    • 1842484780 scopus 로고    scopus 로고
    • Gene regulation: ancient microRNA target sequences in plants
    • Floyd SK, Bowman JL. Gene regulation: ancient microRNA target sequences in plants. Nature 2004, 428(6982):485-486.
    • (2004) Nature , vol.428 , Issue.6982 , pp. 485-486
    • Floyd, S.K.1    Bowman, J.L.2
  • 27
    • 79959694145 scopus 로고    scopus 로고
    • Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data
    • Yang X, Zhang H, Li L. Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data. Genomics 2011, 98(1):40-46.
    • (2011) Genomics , vol.98 , Issue.1 , pp. 40-46
    • Yang, X.1    Zhang, H.2    Li, L.3
  • 28
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J. Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 2010, 62(6):960-976.
    • (2010) Plant J , vol.62 , Issue.6 , pp. 960-976
    • Pantaleo, V.1    Szittya, G.2    Moxon, S.3    Miozzi, L.4    Moulton, V.5    Dalmay, T.6    Burgyan, J.7
  • 30
    • 29144527030 scopus 로고    scopus 로고
    • Plant microRNA: a small regulatory molecule with big impact
    • Zhang B, Pan X, Cobb GP, Anderson TA. Plant microRNA: a small regulatory molecule with big impact. Dev Biol 2006, 289(1):3-16.
    • (2006) Dev Biol , vol.289 , Issue.1 , pp. 3-16
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4
  • 31
    • 77953129094 scopus 로고    scopus 로고
    • Identification of microRNAs and their targets in switchgrass, a model biofuel plant species
    • Matts J, Jagadeeswaran G, Roe BA, Sunkar R. Identification of microRNAs and their targets in switchgrass, a model biofuel plant species. J Plant Physiol 2010, 167(11):896-904.
    • (2010) J Plant Physiol , vol.167 , Issue.11 , pp. 896-904
    • Matts, J.1    Jagadeeswaran, G.2    Roe, B.A.3    Sunkar, R.4
  • 33
    • 84856209023 scopus 로고    scopus 로고
    • Prediction of miRNA targets, affected proteins and their homologs in Glycine max
    • Katara P, Gautam B, Kuntal H, Sharma V. Prediction of miRNA targets, affected proteins and their homologs in Glycine max. Bioinformation 2010, 5(4):162-165.
    • (2010) Bioinformation , vol.5 , Issue.4 , pp. 162-165
    • Katara, P.1    Gautam, B.2    Kuntal, H.3    Sharma, V.4
  • 35
    • 61849137222 scopus 로고    scopus 로고
    • Many roads to maturity: microRNA biogenesis pathways and their regulation
    • Winter J, Jung S, Keller S, Gregory RI, Diederichs S. Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol 2009, 11(3):228-234.
    • (2009) Nat Cell Biol , vol.11 , Issue.3 , pp. 228-234
    • Winter, J.1    Jung, S.2    Keller, S.3    Gregory, R.I.4    Diederichs, S.5
  • 36
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16(8):2001-2019.
    • (2004) Plant Cell , vol.16 , Issue.8 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 37
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 2008, 8:37.
    • (2008) BMC Plant Biol , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 38
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A, Reynolds A, Jayasena SD. Functional siRNAs and miRNAs exhibit strand bias. Cell 2003, 115(2):209-216.
    • (2003) Cell , vol.115 , Issue.2 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 39
    • 77951190661 scopus 로고    scopus 로고
    • Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
    • Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, Hadfield J, Bertone P, Caldas C. Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA 2010, 16(5):991-1006.
    • (2010) RNA , vol.16 , Issue.5 , pp. 991-1006
    • Git, A.1    Dvinge, H.2    Salmon-Divon, M.3    Osborne, M.4    Kutter, C.5    Hadfield, J.6    Bertone, P.7    Caldas, C.8
  • 40
    • 83655211701 scopus 로고    scopus 로고
    • Dynamic Linear Model for the Identification of miRNAs in Next-Generation Sequencing Data
    • Evan Johnson W, Welker NC, Bass BL. Dynamic Linear Model for the Identification of miRNAs in Next-Generation Sequencing Data. Biometrics 2011,
    • (2011) Biometrics
    • Evan Johnson, W.1    Welker, N.C.2    Bass, B.L.3
  • 41
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL. Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17(8):2186-2203.
    • (2005) Plant Cell , vol.17 , Issue.8 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 42
    • 34347263491 scopus 로고    scopus 로고
    • Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
    • Sunkar R, Chinnusamy V, Zhu J, Zhu JK. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci 2007, 12(7):301-309.
    • (2007) Trends Plant Sci , vol.12 , Issue.7 , pp. 301-309
    • Sunkar, R.1    Chinnusamy, V.2    Zhu, J.3    Zhu, J.K.4
  • 44
    • 78650520209 scopus 로고    scopus 로고
    • Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
    • Kantar M, Unver T, Budak H. Regulation of barley miRNAs upon dehydration stress correlated with target gene expression. Funct Integr Genomics 2010, 10(4):493-507.
    • (2010) Funct Integr Genomics , vol.10 , Issue.4 , pp. 493-507
    • Kantar, M.1    Unver, T.2    Budak, H.3
  • 45
    • 77954330416 scopus 로고    scopus 로고
    • MirTools: microRNA profiling and discovery based on high-throughput sequencing
    • Web Server
    • Zhu E, Zhao F, Xu G, Hou H, Zhou L, Li X, Sun Z, Wu J. mirTools: microRNA profiling and discovery based on high-throughput sequencing. Nucleic Acids Res 2010, (38 Web Server):W392-397.
    • (2010) Nucleic Acids Res , Issue.38
    • Zhu, E.1    Zhao, F.2    Xu, G.3    Hou, H.4    Zhou, L.5    Li, X.6    Sun, Z.7    Wu, J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.