-
1
-
-
79960964285
-
Regulation and control of metabolic fluxes in microbes
-
doi:10.1016/j.copbio.2011.04.016
-
L Gerosa, U Sauer, Regulation and control of metabolic fluxes in microbes. Curr. Opin. Biotechnol. 22, 1-10 (2011). doi:10.1016/j.copbio.2011.04. 016
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, pp. 1-10
-
-
Gerosa, L.1
Sauer, U.2
-
2
-
-
33644559358
-
Enzymes: An integrated view of structure, dynamics and function
-
doi:10.1186/1475-2859-5-2
-
PK Agarwal, Enzymes: an integrated view of structure, dynamics and function. Microbial Cell. Fact 5, 2 (2006). doi:10.1186/1475-2859-5-2
-
(2006)
Microbial Cell. Fact
, vol.5
, pp. 2
-
-
Agarwal, P.K.1
-
3
-
-
0041989850
-
Challenges in enzyme mechanism and energetics
-
doi:10.1146/annurev.biochem.72.121801.161617
-
DA Kraut, KS Carroll, D Herschlag, Challenges in enzyme mechanism and energetics. Annu. Rev. Biochem. 72, 517-571 (2003). doi:10.1146/annurev.biochem. 72.121801.161617
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 517-571
-
-
Kraut, D.A.1
Carroll, K.S.2
Herschlag, D.3
-
4
-
-
33644560639
-
Leveraging enzyme structure-function relationships for functional inference and experimental design: The structure-function linkage database
-
doi:10.1021/bi052101l
-
SC Pegg, SD Brown, S Ojha, J Seffernick, EC Meng, JH Morris, PJ Chang, CC Huang, TE Ferrin, PC Babbitt, Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database. Biochemistry 45, 2545-2555 (2006). doi:10.1021/bi052101l
-
(2006)
Biochemistry
, vol.45
, pp. 2545-2555
-
-
Pegg, S.C.1
Brown, S.D.2
Ojha, S.3
Seffernick, J.4
Meng, E.C.5
Morris, J.H.6
Chang, P.J.7
Huang, C.C.8
Ferrin, T.E.9
Babbitt, P.C.10
-
5
-
-
51949107835
-
Progress in metabolic engineering of Saccharomyces cerevisiae
-
doi:10.1128/MMBR.00025-07
-
E Nevoigt, Progress in metabolic engineering of Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev 72, 379-412 (2008). doi:10.1128/MMBR.00025-07
-
(2008)
Microbiol. Mol. Biol. Rev
, vol.72
, pp. 379-412
-
-
Nevoigt, E.1
-
6
-
-
2942620853
-
Functionally and structurally relevant residues of enzymes: Are they segregated or overlapping?
-
C Magyar, E Tudos, I Simon, Functionally and structurally relevant residues of enzymes: are they segregated or overlapping? FEBS Lett 567, 239-242 (2004)
-
(2004)
FEBS Lett
, vol.567
, pp. 239-242
-
-
Magyar, C.1
Tudos, E.2
Simon, I.3
-
7
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
doi:10.1038/nchembio.232
-
DD Boehr, R Nussinov, PE Wright, The role of dynamic conformational ensembles in biomolecular recognition. Nat. Chem. Biol 5, 789-796 (2009). doi:10.1038/nchembio.232
-
(2009)
Nat. Chem. Biol
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
8
-
-
13244289774
-
Descriptor-based protein remote homology identification
-
doi:10.1110/ps.041035505
-
Z Zhang, S Kochhar, MG Grigorov, Descriptor-based protein remote homology identification. Protein Sci 14, 431-444 (2005). doi:10.1110/ps.041035505
-
(2005)
Protein Sci
, vol.14
, pp. 431-444
-
-
Zhang, Z.1
Kochhar, S.2
Grigorov, M.G.3
-
9
-
-
70149121735
-
Sequenced physical properties encode the global organization of protein structure space
-
doi:10.1073/pnas.0903433106
-
S Rackovsky, Sequenced physical properties encode the global organization of protein structure space. Proc. Natl Acad. Sci. USA 106, 14345-14348 (2009). doi:10.1073/pnas.0903433106
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 14345-14348
-
-
Rackovsky, S.1
-
10
-
-
77951069848
-
Predictors of natively unfolded proteins: Unanimous consensus score to detect a twilight zone between order and disorder in generic datasets
-
doi:10.1186/1471-2105-11-198
-
A Deiana, A Giansanti, Predictors of natively unfolded proteins: unanimous consensus score to detect a twilight zone between order and disorder in generic datasets. BMC Bioinforma 11, 198 (2010). doi:10.1186/1471-2105-11-198
-
(2010)
BMC Bioinforma
, vol.11
, pp. 198
-
-
Deiana, A.1
Giansanti, A.2
-
11
-
-
80052237291
-
Intrinsic relationship of amino acid composition/occurrence with topological parameters and protein folding rate
-
MM Gromiha, Intrinsic relationship of amino acid composition/occurrence with topological parameters and protein folding rate. Open Struct. Biol. J 3, 126 (2009)
-
(2009)
Open Struct. Biol. J
, vol.3
, pp. 126
-
-
Gromiha, M.M.1
-
12
-
-
70949106297
-
Exploiting amino acid composition for predicting protein-protein interactions
-
S Roy, D Martinez, H Platero, T Lane, M Werner-Washburne, Exploiting amino acid composition for predicting protein-protein interactions. PLoS One 4(11), e7813 (2009)
-
(2009)
PLoS One
, vol.4
, Issue.11
-
-
Roy, S.1
Martinez, D.2
Platero, H.3
Lane, T.4
Werner-Washburne, M.5
-
13
-
-
65649138753
-
Perturbation waves in proteins and protein networks: Applications of percolation and game theories in signaling and drug design
-
MA Antal, C Böde, P Csermely, Perturbation waves in proteins and protein networks: Applications of percolation and game theories in signaling and drug design. Curr. Protein Peptide Sci 10, 161 (2009)
-
(2009)
Curr. Protein Peptide Sci
, vol.10
, pp. 161
-
-
Antal, M.A.1
Böde, C.2
Csermely, P.3
-
14
-
-
55549109430
-
Role of induced fit in enzyme specificity: A molecular forward/reverse switch
-
doi:10.1074/jbc.R800034200
-
KA Johnson, Role of induced fit in enzyme specificity: a molecular forward/reverse switch. J Biol. Chem 283, 26297-26301 (2008). doi:10.1074/jbc.R800034200
-
(2008)
J Biol. Chem
, vol.283
, pp. 26297-26301
-
-
Johnson, K.A.1
-
15
-
-
84886427699
-
-
D Schomburg, Braunschweig, Accessed 27 December 2011
-
BRENDA (D Schomburg, Braunschweig, 2002). http://www.brenda-enzymes.org/. Accessed 27 December 2011
-
(2002)
-
-
-
16
-
-
84886423094
-
-
The UniProt Consortium, Accessed 27 December 2011
-
UniProtKB (The UniProt Consortium, 2008). http://www.uniprot.org. Accessed 27 December 2011
-
(2008)
-
-
-
17
-
-
0035342270
-
A unified theory of enzyme kinetics based upon the systematic analysis of the variations of kcat, KM, and kcat/KM and the relevant ΔG0≠ values - Possible implications in chemotherapy and biotechnology
-
doi:10.1016/S0006-2952(01)00579-2
-
C Bauer, G Cercignani, GM Mura, M Paolini, A unified theory of enzyme kinetics based upon the systematic analysis of the variations of kcat, KM, and kcat/KM and the relevant ΔG0≠ values - possible implications in chemotherapy and biotechnology. Biochem. Pharmacol 61, 1049-1055 (2001). doi:10.1016/S0006-2952(01)00579-2
-
(2001)
Biochem. Pharmacol
, vol.61
, pp. 1049-1055
-
-
Bauer, C.1
Cercignani, G.2
Mura, G.M.3
Paolini, M.4
-
18
-
-
0000410244
-
Enzyme kinetics and molecular evolution
-
doi:10.1021/cr00094a004
-
SA Benner, Enzyme kinetics and molecular evolution. Chem. Rev 89, 789-806 (1989). doi:10.1021/cr00094a004
-
(1989)
Chem. Rev
, vol.89
, pp. 789-806
-
-
Benner, S.A.1
-
19
-
-
0043122944
-
ExPASy: The proteomics server for in-depth protein knowledge and analysis
-
doi:10.1093/nar/gkg563
-
E Gasteiger, A Gattiker, C Hoogland, I Ivanyi, RD Appel, A Bairoch, ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31, 3784-3788 (2003). doi:10.1093/nar/gkg563
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
20
-
-
33747822326
-
Fold-rate: Prediction of protein folding rates from amino acid sequence
-
MM Gromiha, AM Thangakani, S Selvaraj, Fold-rate: prediction of protein folding rates from amino acid sequence. Nucleic Acids Res 34, W70-W74 (2006)
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Gromiha, M.M.1
Thangakani, A.M.2
Selvaraj, S.3
-
21
-
-
77956649096
-
A survey of cross-validation procedures for model selection
-
doi:10.1214/09-SS054
-
S Arlot, A Cellise, A survey of cross-validation procedures for model selection. Stat. Surv 4, 40- 79 (2010). doi:10.1214/09-SS054
-
(2010)
Stat. Surv
, vol.4
, pp. 40-79
-
-
Arlot, S.1
Cellise, A.2
-
22
-
-
34548599794
-
A caution regarding rules of thumb for variance inflation factors
-
doi:10.1007/s11135-006-9018-6
-
RM O'Brien, A caution regarding rules of thumb for variance inflation factors. Qual. Quant 41, 673-690 (2007). doi:10.1007/s11135-006-9018-6
-
(2007)
Qual. Quant
, vol.41
, pp. 673-690
-
-
O'Brien, R.M.1
-
23
-
-
85004911383
-
Positional flexibilities of amino acid residues in globular proteins
-
doi:10.1111/j.1399-3011.1988.tb01258.x
-
R Bhaskaran, PK Ponnuswamy, Positional flexibilities of amino acid residues in globular proteins. Int. J Pept. Protein Res 32, 242-255 (1988). doi:10.1111/j.1399-3011.1988.tb01258.x
-
(1988)
Int. J Pept. Protein Res
, vol.32
, pp. 242-255
-
-
Bhaskaran, R.1
Ponnuswamy, P.K.2
-
24
-
-
0001040367
-
Algorithm for protein secondary structure prediction based on class prediction
-
doi:10.1093/protein/1.4.289
-
G Deleage, B Roux, Algorithm for protein secondary structure prediction based on class prediction. Protein Eng 1, 289-294 (1987). doi:10.1093/protein/1. 4.289
-
(1987)
Protein Eng
, vol.1
, pp. 289-294
-
-
Deleage, G.1
Roux, B.2
-
25
-
-
0014349825
-
The characterization of amino acid sequences in proteins by statistical methods
-
JM Zimmerman, N Eliezer, R Simha, The characterization of amino acid sequences in proteins by statistical methods. J Theor. Biol 21, 170-201 (1968)
-
(1968)
J Theor. Biol
, vol.21
, pp. 170-201
-
-
Zimmerman, J.M.1
Eliezer, N.2
Simha, R.3
-
27
-
-
0033857139
-
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes?
-
doi:10.1046/j.1432-1327.2000.01527.x
-
B Teusink, J Passage, CA Reijenga, E Esgalhado, CC van der Wejden, M Schepper, MC Walsh, BM Bakker, HV Westerhoff, JL Snoep, Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing Biochemistristy. Eur. J. Biochem 267, 1 (2000). doi:10.1046/j.1432-1327.2000. 01527.x
-
(2000)
Testing Biochemistristy. Eur. J. Biochem
, vol.267
, pp. 1
-
-
Teusink, B.1
Passage, J.2
Reijenga, C.A.3
Esgalhado, E.4
Van Der Wejden, C.C.5
Schepper, M.6
Walsh, M.C.7
Bakker, B.M.8
Westerhoff, H.V.9
Snoep, J.L.10
-
28
-
-
75149190447
-
Measuring enzyme activities under standardized in vivo-like conditions for systems biology
-
doi:10.1111/j.1742-4658.2009.07524.x
-
K van Eunen, J Bouwman, P Daran-Lapujade, J Postmus, AB Canelas, FIC Mensonides, R Orij, I Tuzun, J van den Brink, GJ Smits, WM van Gulik, S Brul, JJ Heijnen, JH de Winde, MJT de Mattos, C Kettner, J Nielsen, HV Westerhoff, BM Bakker, Measuring enzyme activities under standardized in vivo-like conditions for systems biology. FEBS J 277, 749 (2010). doi:10.1111/j.1742-4658.2009.07524. x
-
(2010)
FEBS J
, vol.277
, pp. 749
-
-
Van Eunen, K.1
Bouwman, J.2
Daran-Lapujade, P.3
Postmus, J.4
Canelas, A.B.5
Mensonides, F.I.C.6
Orij, R.7
Tuzun, I.8
Van Den Brink, J.9
Smits, G.J.10
Van Gulik, W.M.11
Brul, S.12
Heijnen, J.J.13
De Winde, J.H.14
De Mattos, M.J.T.15
Kettner, C.16
Nielsen, J.17
Westerhoff, H.V.18
Bakker, B.M.19
-
29
-
-
34249910312
-
Network analysis of protein dynamics
-
C Böde, IA Kovács, MS Szalay, R Palotai, T Korcsmáros, P Csermely, Network analysis of protein dynamics. FEBS Lett 281, 2776-2782 (2007)
-
(2007)
FEBS Lett
, vol.281
, pp. 2776-2782
-
-
Böde, C.1
Kovács, I.A.2
Szalay, M.S.3
Palotai, R.4
Korcsmáros, T.5
Csermely, P.6
-
30
-
-
0031536236
-
Nonlinear confounding in high dimensional regression
-
doi:10.1214/aos/1031833665
-
K.C. Li, Nonlinear confounding in high dimensional regression. Ann. Stat 25, 577-612 (1997). doi:10.1214/aos/1031833665
-
(1997)
Ann. Stat
, vol.25
, pp. 577-612
-
-
Li, K.C.1
-
31
-
-
84864305381
-
Predicting KM values of beta-glucosidases using cellobiose as substrate
-
SM Yan, DQ Shi, H Nong, G Wu, Predicting KM values of beta-glucosidases using cellobiose as substrate. Interdiscip. Sci. Comput. Life Sci 4, 1 -8 (2012)
-
(2012)
Interdiscip. Sci. Comput. Life Sci
, vol.4
, pp. 1-8
-
-
Yan, S.M.1
Shi, D.Q.2
Nong, H.3
Wu, G.4
-
32
-
-
79960580404
-
Prediction of Michaelis-Menten constant of betaglucosidases using nitrophenyl-beta-D-glucopyranoside as substrate
-
SM Yan, G Wu, Prediction of Michaelis-Menten constant of betaglucosidases using nitrophenyl-beta-D-glucopyranoside as substrate. Protein Peptide Lett 18, 1053 (2011)
-
(2011)
Protein Peptide Lett
, vol.18
, pp. 1053
-
-
Yan, S.M.1
Wu, G.2
-
33
-
-
38049052406
-
qPIPSA: Relating enzymatic kinetic parameters and interaction fields
-
doi:10.1186/1471-2105-8-373
-
RR Gabdoulline, M Stein, RC Wade, qPIPSA: relating enzymatic kinetic parameters and interaction fields. BMC Bioinforma 8, 373 (2007). doi:10.1186/1471-2105-8-373
-
(2007)
BMC Bioinforma
, vol.8
, pp. 373
-
-
Gabdoulline, R.R.1
Stein, M.2
Wade, R.C.3
|