The open lid conformation of the lipase is explored in the compressed gas: New insights from molecular dynamic simulation

Journal of Molecular Catalysis B: Enzymatic

Volumn 87, Issue , 2013, Pages 135-138

  Housaindokht, Mohammad Reza ^a   Monhemi, Hassan ^a  

^a FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

Author keywords

Compressed gas; Enzyme, interfacial activation; Molecular dynamic simulation

Indexed keywords

COMPRESSED GAS; ENZYMATIC REACTION; ENZYME INACTIVATION; EXPERIMENTAL OBSERVATION; HIGH ACTIVITY; INTERFACIAL ACTIVATION; MOLECULAR LEVELS; NATIVE CONFORMATION; SUPERCRITICAL CO;

CARBON DIOXIDE; COMPUTER SIMULATION; MOLECULAR DYNAMICS; PROPANE;

LIPASES;

CARBON DIOXIDE; PROPANE; TRIACYLGLYCEROL LIPASE; WATER;

ALPHA HELIX; AQUEOUS SOLUTION; ARTICLE; COMPRESSED GAS; CRYSTAL STRUCTURE; ENZYME ANALYSIS; ENZYME MECHANISM; ENZYME STRUCTURE; GAS; MOLECULAR DYNAMICS; MOLECULAR MODEL; X RAY;

EID: 84870723730     PISSN: 13811177     EISSN: 18733158     Source Type: Journal    
DOI: 10.1016/j.molcatb.2012.11.003     Document Type: Article

References (44)

1. K.-E. Jaeger, and T. Eggert Curr. Opin. Biotechnol. 13 2002 390 397
2. H.R. Hobbs, and N.R. Thomas Chem. Rev. 107 2007 2786 2820
3. Z. Knez J. Supercrit. Fluids 47 2009 357 372
4. H. Ishikawa, M. Shimoda, A. Yonekura, and Y. Osajima J. Agric. Food Chem. 44 1996 2646 2649
5. F. Gui, Z. Wang, J. Wu, F. Chen, X. Liao, and X. Hu Eur. Food Res. Technol. 222 2006 105 111
6. A. Striolo, A. Favaro, N. Elvassore, A. Bertucco, and V.D. Noto J. Supercrit. Fluids 27 2003 283 295
7. L. Zhou, J. Wu, X. Hu, X. Zhi, and X. Liao J. Agric. Food Chem. 57 2009 1890 1895
8. J. Zagrobelny, and F.V. Bright Biotechnol. Progr. 8 1992 421 423
9. X. Liao, Y. Zhang, J. Bei, X. Hu, and J. Wu Innovative Food Sci. Emerg. Technol. 10 2009 47 53
10. W. Hu, Y. Zhang, Y. Wang, L. Zhou, X. Leng, X. Liao, and X. Hu Langmuir 27 2011 909 916
11. D. Xu, F. Yuan, J. Jiang, X. Wang, Z. Hou, and Y. Gao Innovative Food Sci. Emerg. Technol. 12 2011 32 37
12. M.R. Housaindokht, M.R. Bozorgmehr, and H. Monhemi J. Supercrit. Fluids 63 2012 180 186
13. R.L. Silveira, J. Martínez, M.S. Skaf, and L. Martínez J. Phys. Chem. B 2012
14. H. Monhemi, M.R. Housaindokht, M.R. Bozorgmehr, and M.S.S. Googheri J. Supercrit. Fluids 69 2012 1 7
15. M. Habulin, and Z. Knez J. Chem. Technol. Biotechnol. 76 2001 1260 1266
16. J.M. Andrade, E.G. Oestreicher, J.V. Oliveira, D.e. Oliveira, O.a.A.C. Antunes, and C.a. Dariva J. Supercrit. Fluids 46 2008 342 350
17. G.d.O. Kuhn, C. Coghetto, H. Treichel, D.d. Oliveira, and J.V. Oliveira Process Biochem. 46 2011 2286 2290
18. D. Natalia, L. Greiner, W. Leitner, and M.B. Ansorge-Schumacher J. Supercrit. Fluids 62 2012 173 177
19. M. Habulin, and Z.e. Knez Eur. J. Lipid Sci. Technol. 104 2002 381 386
20. D. Oliveira, A.C. Feihrmann, A.F. Rubira, M.H. Kunita, C. Darivaa, and J.V. Oliveira J. Supercrit. Fluids 38 2006 373 382
21. C.D. Rosa, M.B. Morandim, J.L. Ninow, D. Oliveira, H. Treichel, and J.V. Oliveira Bioresour. Technol. 100 2009 5818 5826
22. C.D. Rosa, M.B. Morandim, J.L. Ninow, D. Oliveira, H. Treichel, and J.V. Oliveiraa J. Supercrit. Fluids 47 2008 49 53
23. C.Z. Brusamarelo, E. Rosset, A.d. Césaro, H. Treichel, D. de Oliveira, M.A. Mazutti, M.D. Luccio, and J.V. Oliveira J. Biotechnol. 147 2010 108 115
24. M.C. Almeida, R. Ruivivo, C. Maia, L. Freire, T.C.d. Sampaio, and S. Barreiros Enzyme Microbiol. Technol. 22 1998
25. H. Monhemi, and M.R. Housaindokht J. Supercrit. Fluids 72 2012 161 167
26. R.D. Schmid, and R. Verger Angew. Chem. Int. Ed. 37 1998 1608 1633
27. P. Reis, K. Holmberg, H. Watzke, M.E. Leser, and R. Miller Adv. Colloid Interface Sci. 147-148 2009 237 250
28. J.J. James, B.S. Lakshmi, A.S.N. Seshasayee, and P. Gautam FEBS Lett. 581 2007 4377 4383
29. P. Trodler, R.D. Schmid, and J. Pleiss BMC Struct. Biol. 9 2008 1 13
30. S. Barbe, V. Lafaquière, D. Guieysse, P. Monsan, M. Remaud-Simeon, and I. Andre Proteins: Struct. Funct. Bioinform. 77 2009 509 523
31. S. Rehm, P. Trodler, and J. Pleiss Protein Sci. 19 2010 2122 2130
32. A. Selvan, C. Seniya, S.N. Chandrasekaran, N. Siddharth, S. Anishetty, and G. Pennathur FEBS Lett. 584 2010 4599 4605
33. J. Schrag, Y. Li, M. Cygler, D. Lang, T. Burgdorf, H. Hecht, R. Schmid, D. Schomburg, T. Rydel, J. Oliver, L. Strickland, C. Dunaway, S. Larson, J. Day, and A. McPherson Structure 5 1997 187 202
34. J. Hermans, H.J.C. Berendsen, W.F.V. Gunsteren, and J.P.M. Postma Biopolymers 23 1984 1513 1518
35. M.W. Schmidt, K.K. Baldridge, J.A. Boatz, S.T. Elbert, M.S. Gordon, J.H. Jensen, S. Koseki, N. Matsunaga, K.A. Nguyen, S.I. Su, T.L. Windus, M. Dupuis, and J.A. Montgomery J. Comput. Chem. 14 1993 1347
36. W.F.V. Gunsteren, S.R.B. Billeter, A.A. Eising, P.H. Hunenberger, P. Kruger, A.E. Mark, W.R.P. Scott, and I.G. Tironi Biomolecular Simulation: the gromos96 manual and user guide 1996 Hochschulverlag AG an der ETH Zürich Zürich
37. B.A. Younglove, and J.F. Ely J. Phys. Chem. Ref. Data 16 1987 577 798
38. B. Hess, H. Bekker, H.J.C. Beredensen, and J.E.M. Faraaije J. Comput. Chem. 18 1997 1463 1472
39. S. Miyamoto, and P.A. Kollman J. Comput. Chem 13 1992 952 962
40. H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, A. DiNola, and J.R. Haak J. Chem. Phys. 81 1984 3684 3690
41. T. Darden, D. York, and L. Pedersen J. Chem. Phys. 98 1993 10089 10092
42. E. Lindahl, B. Hess, and D. van der Spoel Comput. Phys. Commun. 91 1995 43 56
43. A.T. Fricks, E.G. Oestreichera, L.C. Filho, A.C. Feihrmannb, Y. Cordeiroc, C. Darivad, and O.A.C. Antunes J. Supercrit. Fluids 50 2009 162 168
44. G. Kuhn, M. Marangoni, D.M.G. Freire, V.e.F. Soares, M.G.d. Godoy, A.d. Castro, M.D. Luccio, H. Treichel, M.A. Mazutti, D.e. Oliveira, and J.V. Oliveiraa J. Chem. Technol. Biotechnol. 85 2010 839 844