Lack of Methylation in the upstream region of human papillomavirus type 6 from aerodigestive tract papillomas

Journal of Virology

Volumn 86, Issue 24, 2012, Pages 13790-13794

  Ure, Agustín Enrique ^a   Forslund, Oal ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; AIRWAY OBSTRUCTION; ARTICLE; BINDING SITE; CELL DIFFERENTIATION; CLINICAL ARTICLE; CONTROLLED STUDY; DIGESTIVE TRACT PAPILLOMA; DNA FLANKING REGION; DNA METHYLATION; FEMALE; GENE SEQUENCE; HUMAN; HUMAN PAPILLOMAVIRUS TYPE 16; HUMAN PAPILLOMAVIRUS TYPE 6; HUMAN TISSUE; MALE; MORBIDITY; MORTALITY; NUCLEOTIDE SEQUENCE; PAPILLOMA; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; TRANSCRIPTION REGULATION; TUMOR BIOPSY; VIRUS GENOME; VIRUS REPLICATION; VIRUS TRANSCRIPTION;

ADULT; AGED; DNA METHYLATION; FEMALE; HUMANS; LARYNGEAL NEOPLASMS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PAPILLOMA; PAPILLOMAVIRIDAE; PHARYNGEAL NEOPLASMS; PHYLOGENY;

HUMAN PAPILLOMAVIRUS TYPE 16; HUMAN PAPILLOMAVIRUS TYPE 6;

EID: 84870686257     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01938-12     Document Type: Article

References (29)

1. Bernard H-U, et al. 2010. Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 401: 70-79.
2. Bhattacharjee B, Sengupta S. 2006. CpG methylation of HPV 16 LCR at E2 binding site proximal to p97 is associated with cervical cancer in presence of intact E2. Virology 354:280-285.
3. De-Castro Arce J, Göckel-Krzikalla E, Rösl F. 2012. Silencing of multicopy HPV16 by viral self-methylation and chromatin occlusion: a model for epigenetic virus-host interaction. Hum. Mol. Genet. 21:1693-1705.
4. de Villiers EM, Gissmann L, zur Hausen H. 1981. Molecular cloning of viral DNA from human genital warts. J. Virol. 40:932-935.
5. Ding D-C, et al. 2009. Methylation of the long control region of HPV16 is related to the severity of cervical neoplasia. Eur. J. Obstet. Gynecol. Reprod. Biol. 147:215-220.
6. Donne AJ, Hampson L, Homer JJIN, Hampson IN. 2010. The role of HPV type in recurrent respiratory papillomatosis. Int. J. Pediatri. Otorhinolaryngol. 74:7-14.
7. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
8. Gáll T, Kis A, Fehér E, Gergely L, Szarka K. 2011. Virological failure of intralesional cidofovir therapy in recurrent respiratory papillomatosis is not associated with genetic or epigenetic changes of HPV11: complete genome comparison of sequential isolates. Antiviral Res. 92:356-358.
9. Heinzel P, et al. 1995. Variation of human papillomavirus type 6 (HPV-6) and HPV-11 genomes sampled throughout the world. J. Clin. Microbiol. 33:1746-1754.
10. Kalantari M, Chase DM, Tewari KS, Bernard H-U. 2010. Recombination of human papillomavirus-16 and host DNA in exfoliated cervical cells: a pilot study of L1 gene methylation and chromosomal integration as biomarkers of carcinogenic progression. J. Med. Virol. 82:311-320.
11. Kim K, Garner-Hamrick PA, Fisher C, Lee D, Lambert PF. 2003. Methylation patterns of papillomavirus DNA, its influence on E2 function, and implications in viral infection. J. Virol. 77: 12450-12459.
12. Kocjan BJ, et al. 2009. Prevaccination genomic diversity of human papillomavirus genotype 6 (HPV 6). Virology 391:274-283.
13. Larson DA, Derkay CS. 2010. Epidemiology of recurrent respiratory papillomatosis. APMIS 118:450-454.
14. Mazumder Indra D, et al. 2011. Genetic and epigenetic changes of HPV16 in cervical cancer differentially regulate E6/E7 expression and associate with disease progression. Gynecol. Oncol. 123:597-604.
15. Okonechnikov K, Golosova O, Fursov M. 2012. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28:1166-1167.
16. Park I-S, et al. 2011. Characterization of the methylation patterns in human papillomavirus type 16 viral DNA in head and neck cancers. Cancer Prev. Res. (Philadelphia). 4:207-217.
17. Pignatari S, Smith EM, Gray SD, Shive C, Turek LP. 1992. Detection of human papillomavirus infection in diseased and nondiseased sites of the respiratory tract in recurrent respiratory papillomatosis patients by DNA hybridization. Ann. Otol. Rhinol. Laryngol. 101:408-412.
18. Rambaut A. 2009. FigTree v1.3. http://beast.bio.ed.ac.uk/figtree.
19. Schmitt M, et al. 2006. Bead-based multiplex genotyping of human papillomaviruses. J. Clin. Microbiol. 44:504-512.
20. Schwarz E, et al. 1983. DNA sequence and genome organization of genital human papillomavirus type 6b. EMBO J. 2:2341-2348.
21. Silvestro D, Michalak I. 2011. raxmlGUI: a graphical front-end for RAxML. Organ. Divers. Evol. doi:10.1007/s13127-011-0056-0.
22. Smith EM, Pignatari SS, Gray SD, Haugen TH, Turek LP. 1993. Human papillomavirus infection in papillomas and nondiseased respiratory sites of patients with recurrent respiratory papillomatosis using the polymerase chain reaction. Arch. Otolaryngol. Head Neck Surg. 119:554-557.
23. Söderlund-Strand A, Carlson J, Dillner J. 2009. Modified general primer PCR system for sensitive detection of multiple types of oncogenic human papillomavirus. J. Clin. Microbiol. 47:541-546.
24. Stamatakis A, Ludwig T, Meier H. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics (Oxford) 21:456-463.
25. Stephen JK, et al. 2010. Consistent DNA hypermethylation patterns in laryngeal papillomas. Int. J. Head Neck Surg. 1:69-77.
26. Sun C, Reimers LL, Burk RD. 2011. Methylation of HPV16 genome CpG sites is associated with cervix precancer and cancer. Gynecol. Oncol. 121: 59-63.
27. Ure A, et al. 2011. Characterization of the complete genomes of Camelus dromedarius papillomavirus types 1 and 2. J. Gen. Virol. 92:1769-1777.
28. Vinokurova S, von Knebel Doeberitz M. 2011. Differential methylation of theHPV16 upstream regulatory region during epithelial differentiation and neoplastic transformation. PLoS One 6:e24451. doi:10.1371/journal.pone.0024451.
29. zur Hausen H. 2002. Papillomaviruses and cancer: from basic studies to clinical application. Nat. Rev. Cancer 2:342-350.