The active site of melanopsin: The biological clock photoreceptor

Journal of the American Chemical Society

Volumn 134, Issue 48, 2012, Pages 19536-19539

  Sekharan, Sivakumar ^a   Wei, Jennifer N ^a   Batista, Victor S ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORBANCES; ACTIVE SITE; BIOLOGICAL CLOCK; BLUE LIGHT; BOND LENGTH ALTERNATION; BOVINE RHODOPSIN; CIRCADIAN RHYTHMS; H-BONDING INTERACTION; HOMOLOGY MODELS; HORMONAL ACTIVITY; LIGHT SENSOR; MELANOPSIN; PHOTOPIGMENTS; PROTONATED SCHIFF BASE; SCHIFF-BASE; SENSORY PHOTORECEPTORS; SINGLE-SITE MUTATIONS; SMALL REGION; SPECTRAL CHANGE; SPECTRAL SHIFT; STRUCTURAL MODELS; SUPRACHIASMATIC NUCLEUS;

BOND LENGTH; BRAIN; CHROMOPHORES; CLOCKS; FUNCTIONAL GROUPS; MAMMALS; MODEL STRUCTURES;

VISION;

MELANOPSIN; RHODOPSIN; SCHIFF BASE; WATER;

ARTICLE; CHROMATOPHORE; COW; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; GENE MUTATION; HYDROGEN BOND; MOUSE; NONHUMAN; PHOTORECEPTOR; SQUID;

AMINO ACID SEQUENCE; ANIMALS; BIOLOGICAL CLOCKS; CATALYTIC DOMAIN; DECAPODIFORMES; MICE; MODELS, BIOLOGICAL; PHOTORECEPTOR CELLS; ROD OPSINS; SEQUENCE ALIGNMENT;

EID: 84870658625     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja308763b     Document Type: Article

References (46)

1. Gether, U.; Kobilka, B. J. Biol. Chem. 1998, 273, 17979
2. Provencio, I.; Jiang, G.; DeGro[, W. J.; Hayes, W. P.; Rollag, M. D. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 340
3. Provencio, I.; Rodriguez, I. R.; Jian, G.; Hayes, W. P.; Rollag, M. D. J. Neurosci. 2000, 20, 600
4. Murakami, M.; Kouyama, T. Nature 2008, 453, 363
5. Hattar, S. Nature 2003, 424, 76
6. Lucas, R. J. Science 2003, 299, 245
7. Panda, S. Science 2003, 301, 525
8. Barnard, A. R.; Hattar, S.; Hankins, M. W.; Lucas, R. J. Curr. Biol. 2006, 16, 389
9. Ecker, J. L. Neuron 2010, 67, 49
10. Koyanagi, M.; Terakita, A. Photochem. Photobiol. 2008, 84, 1024
11. Shichida, S.; Tokunaga, F.; Yoshizawa, T. Biochim. Biophys. Acta: Bioenerg. 1978, 504, 413
12. Terakita, A.; Hariyama, T.; Tsukahara, Y.; Katsukar, Y.; Tashiro, H. FEBS Lett. 1993, 330, 197
13. Terakita, A.; Yamashita, T.; Tachibanaki, S.; Shichida, Y. FEBS Lett. 1998, 439, 110
14. Yarfitz, S.; Hurley, J. B. J. Biol. Chem. 1994, 269, 14329
15. Terakita, A.; Tsukamoto, H.; Koyanagi, M.; Sugahara, M.; Yamashita, T.; Shichida, Y. J. Neurochem. 2008, 105, 883
16. Sekharan, S.; Morokuma, K. J. Am. Chem. Soc. 2011, 133, 19052
17. Yokoyama, S. Annu. Rev. Genomics Hum. Genet. 2008, 9, 259
18. Newman, L. A.; Walker, M. T.; Brown, L.; Cronin, T. W.; Robinson, P. R. Biochemistry 2003, 42, 12734
19. Koyanagi, M.; Kubokawa, K.; Tsukamoto, H.; Shichida, Y.; Terakita, A. Curr. Biol. 2005, 15, 1065
20. Brainard, G. C. J. Neurosci. 2001, 21, 6405
21. Hankins, M. W.; Peiron, S. N.; Foster, R. G. Trends Neurosci. 2008, 31, 27
22. Berson, D. M.; Dunn, F. A.; Takao, M. Science 2002, 295, 1070
23. Walker, M. T.; Brown, R. L.; Cronin, T. W.; Robinson, P. R. Proc. Natl. Acad. Sci. U.S.A. 2008, 26, 8861
24. Mure, L. S. PLoS 2009, 4, e5991
25. Matsuyama, T.; Yamashita, T.; Imamoto, Y.; Shichida, Y. Biochemistry 2012, 51, 5454
26. Sasaki, J.; Brown, L. S.; Chon, Y. S.; Kandori, H.; Maeda, A.; Needleman, R.; Lanyi, J. K. Science 1995, 269, 73
27. Spudich, E. N. J. Mol. Biol. 2012, 415, 455
28. Vreven, T.; Morokuma, K.; Farkas, O.; Schlegel, H. B.; Frisch, M. J. J. Comput. Chem. 2003, 24, 760
29. Frisch, M. J.; Gaussian 09, revision A.02; Gaussian, Inc.: Wallingford, CT, 2009.
30. Cornell, W. D. J. Am. Chem. Soc. 1995, 117, 5179
31. Sekharan, S.; Katayama, K.; Kandori, H.; Morokuma, K. J. Am. Chem. Soc. 2012, 134, 10706
32. Sekharan, S.; Yokoyama, S.; Morokuma, K. J. Phys. Chem. B 2011, 115, 15380
33. Welke, K.; Frähmcke; Watanabe, H. C.; Hegemann, P.; Elstner, M. J. Phys. Chem. B 2011, 115, 15119
34. Sekharan, S.; Altun, A.; Morokuma, K. Chem. Eur. J. 2010, 16, 1744
35. Neese, F. A. J. Chem. Phys. 2003, 119, 9428
36. Neese, F. ORCA, v.2.6; Universität Bonn: Bonn, Germany, 2007.
37. Roos, B. O.; Taylor, P. R. Chem. Phys. 1998, 48, 157
38. Zhao, Y.; Truhlar, D. G. J. Phys. Chem. A 2006, 110, 10478
39. Sekharan, S.; Weingart, O.; Buss, V. Biophys. J. 2006, 91, L07
40. Sekharan, S.; Altun, A.; Morokuma, K. J. Am. Chem. Soc. 2010, 132, 15856
41. Mathies, R.; Stryer, L. Proc. Natl. Acad. Sci. U.S.A. 1976, 73, 2169
42. Sakmar, T. P.; Franke, R. R.; Khorana, H. G Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 8309
43. Gascon, J. A.; Sproviero, E. M.; Batista, V. S. Acc. Chem. Res. 2006, 39, 184
44. Sekharan, S.; Sugihara, M.; Buss, V. Angew. Chem., Int. Ed. 2007, 46, 269
45. Altun, A.; Yokoyama, S.; Morokuma, K. J. Phys. Chem. B 2008, 112, 6814
46. Bosch, L.; Ramon, E.; del Valle, L. J.; Garriga, P. J. Biol. Chem. 2003, 278, 20203