-
2
-
-
0032893932
-
Preservation of duplicate genes by complementary degenerative mutations
-
Force, A. et al. Preservation of duplicate genes by complementary degenerative mutations. Genetics 151, 1531-1545 (1999).
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
-
3
-
-
0037133168
-
Amplification-mutagenesis; Evidence that 'directed' adaptive mutation and general hypermutability result from growth with a selected gene amplification
-
Hendrickson, H., Slechta, E.S., Bergthorsson, U., Andersson, D.I. & Roth, J.R. Amplification-mutagenesis; Evidence that 'directed' adaptive mutation and general hypermutability result from growth with a selected gene amplification. Proc. Nats. Acad. Sci. 99, 2164-2169 (2002).
-
(2002)
Proc. Nats. Acad. Sci.
, vol.99
, pp. 2164-2169
-
-
Hendrickson, H.1
Slechta, E.S.2
Bergthorsson, U.3
Andersson, D.I.4
Roth, J.R.5
-
4
-
-
0345107239
-
Selection in the evolution of gene duplications
-
RESEARCH0008
-
Kondrashov, F.A., Rogozin, I.B., Wolf, Y.I. & Koonin, E.V. Selection in the evolution of gene duplications. Genome Biol. 3, RESEARCH0008 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Kondrashov, F.A.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
5
-
-
0037572262
-
On the nature of gene innovation: Duplication patterns in mlcrobial genomes
-
Hooper, S.D. & Berg, O.G. On the nature of gene innovation: duplication patterns in mlcrobial genomes. Mol. Biol. Evol. 20, 945-954 (2003).
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 945-954
-
-
Hooper, S.D.1
Berg, O.G.2
-
6
-
-
3242742140
-
Adaptive mutation: How growth under selection stimulates Lac(+) reversion by increasing target copy number
-
Roth, J.R. & Andersson, D.I. Adaptive mutation: how growth under selection stimulates Lac(+) reversion by increasing target copy number. J. Bacteriol. 186, 4855-4860 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4855-4860
-
-
Roth, J.R.1
Andersson, D.I.2
-
7
-
-
0026094779
-
Adaptive radiation of a frameshift mutation in Escherichia coli
-
Cairns, J. & Foster, P.L. Adaptive radiation of a frameshift mutation in Escherichia coli. Genetics 128, 695-701 (1991).
-
(1991)
Genetics
, vol.128
, pp. 695-701
-
-
Cairns, J.1
Foster, P.L.2
-
8
-
-
0031468083
-
Gene amplification and genomic plasticity in prokaryotes
-
Romero, D. & Palacios, R. Gene amplification and genomic plasticity in prokaryotes. Annu. Rev. Genet. 31, 91-111 (1997).
-
(1997)
Annu. Rev. Genet.
, vol.31
, pp. 91-111
-
-
Romero, D.1
Palacios, R.2
-
9
-
-
0035895278
-
Genetic architecture of thermal adaptation in Escherichia coli
-
Riehle, M.M., Bennett, A.F. & Long, A.D. Genetic architecture of thermal adaptation in Escherichia coli. Proc. Natl. Acad. Sci. USA 98. 525-530 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 525-530
-
-
Riehle, M.M.1
Bennett, A.F.2
Long, A.D.3
-
10
-
-
4143069266
-
Evolutionary genomics of ecological specialization
-
Zhong, S., Khodursky, A., Dykhuizen, D.E. & Dean, A.M. Evolutionary genomics of ecological specialization. Proc. Natl. Acad. Sci. USA 101, 11719-11724 (2004)
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11719-11724
-
-
Zhong, S.1
Khodursky, A.2
Dykhuizen, D.E.3
Dean, A.M.4
-
11
-
-
0037342721
-
Genome plasticity in Acinetobacter: New degradative capabilities acquired by the spontaneous amplification of large chromosomal segments
-
Reams, A.B. & Neidle, E.L. Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments. Mol. Microbiol. 47, 1291-1304 (2003).
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1291-1304
-
-
Reams, A.B.1
Neidle, E.L.2
-
12
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
Dunham, M.J. et al. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 99, 16144-16149 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16144-16149
-
-
Dunham, M.J.1
-
13
-
-
0033166811
-
Quantitative variation and selection of esterase gene amplification in Culex pipiens
-
Guillemaud, T. et al. Quantitative variation and selection of esterase gene amplification in Culex pipiens. Heredity 83, 87-99 (1999).
-
(1999)
Heredity
, vol.83
, pp. 87-99
-
-
Guillemaud, T.1
-
14
-
-
0344200036
-
Cytogenetic analysis of chimeric antibody-producing CHO cells in the course of dihydrofolate reductase-mediated gene amplification and their stability in the absence of selective pressure
-
Kim, S.J. & Lee, G.M. Cytogenetic analysis of chimeric antibody-producing CHO cells in the course of dihydrofolate reductase-mediated gene amplification and their stability in the absence of selective pressure. Biotechnol. Bioeng. 64, 741-749 (1999).
-
(1999)
Biotechnol. Bioeng.
, vol.64
, pp. 741-749
-
-
Kim, S.J.1
Lee, G.M.2
-
15
-
-
2942691589
-
Amplification-mutagenesis-how growth under selection contributes to the origin of genetic diversity and explains the phenomenon of adaptive mutation
-
Roth, J.R. & Andersson, D.I. Amplification-mutagenesis-how growth under selection contributes to the origin of genetic diversity and explains the phenomenon of adaptive mutation. Res. Microbiol. 155, 342-351 (2004).
-
(2004)
Res. Microbiol.
, vol.155
, pp. 342-351
-
-
Roth, J.R.1
Andersson, D.I.2
-
16
-
-
0037559407
-
The EBG system of E. coli: Origin and evolution of a novel beta-galactosidase for the metabolism of lactose
-
Hall, B.G. The EBG system of E. coli: origin and evolution of a novel beta-galactosidase for the metabolism of lactose. Genetica 118, 143-156 (2003).
-
(2003)
Genetica
, vol.118
, pp. 143-156
-
-
Hall, B.G.1
-
17
-
-
11244281311
-
The 'evolvability' of promiscuous protein functions
-
Aharoni, A. et al. The 'evolvability' of promiscuous protein functions. Nat. Genet. 37, 73-76 (2005).
-
(2005)
Nat. Genet.
, vol.37
, pp. 73-76
-
-
Aharoni, A.1
-
18
-
-
1642266935
-
Gene duplication and biased functional retention of paralogs in bacterial genomes
-
Gevers, D., Vandepoele, K., Simillion, C. & Van de Peer, Y. Gene duplication and biased functional retention of paralogs in bacterial genomes. Trends Microbiol. 12, 148-154 (2004).
-
(2004)
Trends Microbiol.
, vol.12
, pp. 148-154
-
-
Gevers, D.1
Vandepoele, K.2
Simillion, C.3
Van De Peer, Y.4
-
19
-
-
0642344263
-
Duplication is more common among laterally transferred genes than among indigenous genes
-
Hooper, S.D. & Berg, O.G. Duplication is more common among laterally transferred genes than among indigenous genes. Genome Biol. 4, R48 (2003).
-
(2003)
Genome Biol.
, vol.4
-
-
Hooper, S.D.1
Berg, O.G.2
-
20
-
-
3042720475
-
Genome evolution in yeasts
-
Dujon, B. et al. Genome evolution in yeasts. Nature 430, 35-44 (2004).
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
-
21
-
-
0036066765
-
The role of lineage-specific gene family expansion in the evolution of eukaryotes
-
Lespinet, O., Wolf, Y.I., Koonin, E.V. & Aravind, L. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res. 12, 1048-1059 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
22
-
-
0035046878
-
Lineage-specific gene expansions in bacterial and archaeal genomes
-
Jordan, I.K., Makarova, K.S., Spouge, J.L., Wolf, Y.I. & Koonin, E.V. Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res. 11, 555-565 (2001).
-
(2001)
Genome Res.
, vol.11
, pp. 555-565
-
-
Jordan, I.K.1
Makarova, K.S.2
Spouge, J.L.3
Wolf, Y.I.4
Koonin, E.V.5
-
23
-
-
19344366754
-
Lineage-specific gene duplication and loss in human and great ape evolution
-
Fortna, A. et al. Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution. PLOS Biol. 2, 0937-0954 (2004).
-
(2004)
PLOS Biol.
, vol.2
, pp. 0937-0954
-
-
Fortna, A.1
-
24
-
-
7844234750
-
Large multi-chromosomal duplications encompass many members of the olfactory receptor gene family in the human genome
-
Trask, B.J. et al. Large multi-chromosomal duplications encompass many members of the olfactory receptor gene family in the human genome. Hum. Mol. Genet. 7, 2007-2020 (1998).
-
(1998)
Hum. Mol. Genet.
, vol.7
, pp. 2007-2020
-
-
Trask, B.J.1
-
25
-
-
0035504448
-
Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non-homologous chromosomes
-
Mefford, H.C. et al. Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non-homologous chromosomes. Hum. Mol. Genet. 10, 2363-2372 (2001).
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 2363-2372
-
-
Mefford, H.C.1
-
26
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
Sebat, J. et al. Large-scale copy number polymorphism in the human genome. Science 305, 525-528 (2004).
-
(2004)
Science
, vol.305
, pp. 525-528
-
-
Sebat, J.1
-
27
-
-
0031924363
-
The frequency distribution of gene family sizes in complete genomes
-
Huynen, M.A. & van Nimwegen, E. The frequency distribution of gene family sizes in complete genomes. Mol. Biol. Evol. 15, 583-589 (1998).
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 583-589
-
-
Huynen, M.A.1
Van Nimwegen, E.2
-
28
-
-
0036314772
-
Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
-
Harrison, P.M. & Gerstein, M. Studying genomes through the aeons: protein families, pseudogenes and proteome evolution. J. Mol. Biol. 318, 1155-1174 (2002).
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 1155-1174
-
-
Harrison, P.M.1
Gerstein, M.2
-
29
-
-
0035798398
-
Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model
-
Qian, J., Luscombe, N.M. & Gerstein, M. Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model. J. Mol. Biol. 313, 673-681 (2001).
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 673-681
-
-
Qian, J.1
Luscombe, N.M.2
Gerstein, M.3
-
30
-
-
0142148213
-
Simple stochastic birth and death models of genome evolution: Was there enough time for us to evolve?
-
Karev, G.P., Wolf, Y.I. & Koonin, E.V. Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve? Bioinformatics 19, 1889-1900 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 1889-1900
-
-
Karev, G.P.1
Wolf, Y.I.2
Koonin, E.V.3
-
31
-
-
0041718387
-
Birth and death of protein domains: A simple model of evolution explains power law behavior
-
Karev, G.P., Wolf, Y.I., Rzhetsky, A.Y., Berezovskaya, F.S. & Koonin, E.V. Birth and death of protein domains: A simple model of evolution explains power law behavior. BMC Evol. Biol. 2, 18 (2002).
-
(2002)
BMC Evol. Biol.
, vol.2
, pp. 18
-
-
Karev, G.P.1
Wolf, Y.I.2
Rzhetsky, A.Y.3
Berezovskaya, F.S.4
Koonin, E.V.5
-
32
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M. & Conery, J.S. The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155 (2000).
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
33
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes, A.L. The evolution of functionally novel proteins after gene duplication. Proc. R. Soc. Lond. B Biol. Sci. 256, 119-124 (1994).
-
(1994)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
34
-
-
0036262232
-
Selection and gene duplication: A view from the genome
-
Wagner, A. Selection and gene duplication: a view from the genome. Genome Biol. 3, 1012.1-1012.3 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Wagner, A.1
-
35
-
-
0033214579
-
Evolutionary diversification of the mammalian defensins
-
Hughes, A.L. Evolutionary diversification of the mammalian defensins. Cell Mol. Life Sci. 56, 94-103 (1999).
-
(1999)
Cell Mol. Life Sci.
, vol.56
, pp. 94-103
-
-
Hughes, A.L.1
-
36
-
-
0041886501
-
Natural selection on the olfactory receptor gene family in humans and chimpanzees
-
Gilad, Y., Bustamante, C.D., Lancet, D. & Paabo, S. Natural selection on the olfactory receptor gene family in humans and chimpanzees. Am. J. Hum. Genet. 73, 489-501 (2003).
-
(2003)
Am. J. Hum. Genet.
, vol.73
, pp. 489-501
-
-
Gilad, Y.1
Bustamante, C.D.2
Lancet, D.3
Paabo, S.4
-
37
-
-
0033779877
-
Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes
-
Gilad, Y. et al. Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes. Nat. Genet. 26, 221-224 (2000).
-
(2000)
Nat. Genet.
, vol.26
, pp. 221-224
-
-
Gilad, Y.1
-
38
-
-
0035807336
-
Positive selection of a gene family during the emergence of humans and African apes
-
Johnson, M.E. et al. Positive selection of a gene family during the emergence of humans and African apes. Nature 413, 514-519 (2001).
-
(2001)
Nature
, vol.413
, pp. 514-519
-
-
Johnson, M.E.1
-
39
-
-
0032584099
-
Positive Darwinian selection after gene duplication in primate ribonuclease genes
-
Zhang, J., Rosenberg, H.F. & Nei, M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. USA 95, 3708-3713 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3708-3713
-
-
Zhang, J.1
Rosenberg, H.F.2
Nei, M.3
-
40
-
-
4143074629
-
Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila
-
Holloway, A.K. & Begun, D.J. Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila. Mol. Biol. Evol. 21, 1625-1628 (2004).
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1625-1628
-
-
Holloway, A.K.1
Begun, D.J.2
-
41
-
-
0347364640
-
The early stages of duplicate gene evolution
-
Moore, R.C. & Purugganan, M.D. The early stages of duplicate gene evolution. Proc. Natl. Acad. Sci. USA 100, 15682-15687 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15682-15687
-
-
Moore, R.C.1
Purugganan, M.D.2
-
42
-
-
0038104885
-
Complex evolution of 7E olfactory receptor genes in segmental duplications
-
Newman, T. & Trask, B.J. Complex Evolution of 7E Olfactory Receptor Genes in Segmental Duplications. Genome Res. 13, 781-793 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 781-793
-
-
Newman, T.1
Trask, B.J.2
-
43
-
-
11144239489
-
Comprehensive analysis of pseudogenes in prokaryotes: Widespread gene decay and failure of putative horizontally transferred genes
-
Liu, Y., Harrison, P.M., Kunin, V. & Gerstein, M. Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes. Genome Biol. 5, R64 (2004).
-
(2004)
Genome Biol.
, vol.5
-
-
Liu, Y.1
Harrison, P.M.2
Kunin, V.3
Gerstein, M.4
-
44
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira, A., Ochman, H. & Moran, N.A. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17, 589-596 (2001).
-
(2001)
Trends Genet.
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
45
-
-
0037092592
-
The sense of smell: Genomics of vertebrate odorant receptors
-
Young, J.M. & Trask, B.J. The sense of smell: genomics of vertebrate odorant receptors. Hum. Mol. Genet. 11, 1153-1160 (2002).
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 1153-1160
-
-
Young, J.M.1
Trask, B.J.2
-
46
-
-
0037357440
-
Population differences in the human functional olfactory repertoire
-
Gilad, Y. & Lancet, D. Population differences in the human functional olfactory repertoire. Mol. Biol. Evol. 20, 307-314 (2003).
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 307-314
-
-
Gilad, Y.1
Lancet, D.2
-
47
-
-
0346243805
-
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
-
Clark, A.G. Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 302, 1960-1963 (2003).
-
(2003)
Science
, vol.302
, pp. 1960-1963
-
-
Clark, A.G.1
-
50
-
-
0002224909
-
Punctuated equilibria: An alternative to phyletic gradualism
-
(ed. Schopf, T.) (Freeman, Cooper & Co., San Francisco, California)
-
Eldredge, N. & Gould, S.J. Punctuated equilibria: an alternative to phyletic gradualism, in Models in Paleobiology (ed. Schopf, T.) 82-115 (Freeman, Cooper & Co., San Francisco, California, 1972).
-
(1972)
Models in Paleobiology
, pp. 82-115
-
-
Eldredge, N.1
Gould, S.J.2
-
53
-
-
0017144189
-
Natural selection and random genetic drift in phenotypic evolution
-
Lande, R. Natural selection and random genetic drift in phenotypic evolution. Evolution 30, 314-334 (1976).
-
(1976)
Evolution
, vol.30
, pp. 314-334
-
-
Lande, R.1
-
54
-
-
0020572129
-
Rates of evolution: Effects of time and temporal scaling
-
Gingerich, P.D. Rates of evolution: effects of time and temporal scaling. Science 222, 159-161 (1983).
-
(1983)
Science
, vol.222
, pp. 159-161
-
-
Gingerich, P.D.1
-
55
-
-
0025635488
-
The rate of morphological evolution in mammals from the standpoint of the neutral expectation
-
Lynch, M. The rate of morphological evolution in mammals from the standpoint of the neutral expectation. Am. Nat. 136, 727-741 (1990).
-
(1990)
Am. Nat.
, vol.136
, pp. 727-741
-
-
Lynch, M.1
-
56
-
-
0001065304
-
Rate tests for selection on quantitative characters during macroevolution and microevolution
-
Turelli, M., Gillespie, J. H. & Lande, R. Rate tests for selection on quantitative characters during macroevolution and microevolution. Evolution 42, 1085-1089 (1988).
-
(1988)
Evolution
, vol.42
, pp. 1085-1089
-
-
Turelli, M.1
Gillespie, J.H.2
Lande, R.3
-
57
-
-
0036959868
-
Whole-tree methods for detecting differential diversification rates
-
Chan, K.M. & Moore, B.R. Whole-tree methods for detecting differential diversification rates. Syst. Biol. 51, 855-865 (2002).
-
(2002)
Syst. Biol.
, vol.51
, pp. 855-865
-
-
Chan, K.M.1
Moore, B.R.2
-
58
-
-
0029663584
-
Contrasting the underlying patterns of active trends in morphologic evolution
-
Wagner, P.J. Contrasting the underlying patterns of active trends in morphologic evolution. Evolution 50, 990-1007 (1996).
-
(1996)
Evolution
, vol.50
, pp. 990-1007
-
-
Wagner, P.J.1
-
59
-
-
0002160633
-
Body size and macroevolution
-
(eds. Jablonski, D., Erwin, D.H. & Lipps, J.H.) (University of Chicago Press, Chicago, Illinois)
-
Jablonski, D. Body size and macroevolution. in Evolutionary Paleobiology (eds. Jablonski, D., Erwin, D.H. & Lipps, J.H.) 256-289 (University of Chicago Press, Chicago, Illinois, 1996).
-
(1996)
Evolutionary Paleobiology
, pp. 256-289
-
-
Jablonski, D.1
|