Comparative phosphoproteomics studies of macrophage response to bacterial virulence effectors

Journal of Proteomics

Volumn 77, Issue , 2012, Pages 251-261

  Chen, Chen ^a   Wu, Di ^a   Zhang, Leike ^a   Zhao, Yong ^a   Guo, Lin ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

LPS; Macrophage; Phosphoproteomics; TLR

Indexed keywords

ACTIN; AMINO ACID; GUANOSINE TRIPHOSPHATASE; IRON; JANUS KINASE; LIPOPOLYSACCHARIDE; MITOGEN ACTIVATED PROTEIN KINASE 1; MITOGEN ACTIVATED PROTEIN KINASE 3; PHOSPHOPEPTIDE; PHOSPHOPROTEIN; STAT PROTEIN; TOLL LIKE RECEPTOR 2; TOLL LIKE RECEPTOR 4; VIRULENCE FACTOR;

ANIMAL CELL; ARTICLE; BACTERIAL VIRULENCE; BIOINFORMATICS; CELL CULTURE; CYTOSKELETON; INNATE IMMUNITY; ISOTOPE LABELING; MACROPHAGE; NONHUMAN; PRIORITY JOURNAL; PROTEIN MOTIF; PROTEIN PHOSPHORYLATION; PROTEOMICS; STAPHYLOCOCCUS AUREUS;

ANIMALS; CELL LINE; GRAM-NEGATIVE BACTERIA; ISOTOPE LABELING; LIPOPOLYSACCHARIDES; MICE; PHOSPHOPROTEINS; PROTEOMICS; SIGNAL TRANSDUCTION; STAPHYLOCOCCUS AUREUS; VIRULENCE FACTORS;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; POSIBACTERIA; STAPHYLOCOCCUS AUREUS;

EID: 84870391451     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.08.024     Document Type: Article

References (29)

1. Sabroe I., Parker L.C., Dower S.K., Whyte M.K. The role of TLR activation in inflammation. J Pathol 2008, 214:126-135.
2. Verstrepen L., Bekaert T., Chau T.L., Tavernier J., Chariot A., Beyaert R. TLR-4, IL-1R and TNF-R signaling to NF-kappaB: variations on a common theme. Cell Mol Life Sci 2008, 65:2964-2978.
3. Zhang Y.L., Dong C. MAP kinases in immune responses. Cell Mol Immunol 2005, 2:20-27.
4. Akira S., Takeda K. Toll-like receptor signalling. Nat Rev Immunol 2004, 4:499-511.
5. Akira S., Takeda K., Kaisho T. Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol 2001, 2:675-680.
6. An H., Yu Y., Zhang M., Xu H., Qi R., Yan X., et al. Involvement of ERK, p38 and NF-kappaB signal transduction in regulation of TLR2, TLR4 and TLR9 gene expression induced by lipopolysaccharide in mouse dendritic cells. Immunology 2002, 106:38-45.
7. Ong S.E., Mann M. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 2006, 1:2650-2660.
8. Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H. A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics 2008, 7:1389-1396.
9. Chen X., Wu D., Zhao Y., Wong B.H., Guo L. Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods. J Chromatogr B Analyt Technol Biomed Life Sci. 2011, 879:25-34.
10. Thomas P.D., Campbell M.J., Kejariwal A., Mi H., Karlak B., Daverman R., et al. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 2003, 13:2129-2141.
11. Bindea G., Mlecnik B., Hackl H., Charoentong P., Tosolini M., Kirilovsky A., et al. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics 2009, 25:1091-1093.
12. Baldwin A.S. The NF-kappa B and I kappa B proteins: new discoveries and insights. Annu Rev Immunol 1996, 14:649-683.
13. Seger R., Krebs E.G. The MAPK signaling cascade. FASEB J 1995, 9:726-735.
14. Harrison R.E., Bucci C., Vieira O.V., Schroer T.A., Grinstein S. Phagosomes fuse with late endosomes and/or lysosomes by extension of membrane protrusions along microtubules: role of Rab7 and RILP. Mol Cell Biol 2003, 23:6494-6506.
15. Fallman M., Deleuil F., McGee K. Resistance to phagocytosis by Yersinia. Int J Med Microbiol 2002, 291:501-509.
16. Monje P., Hernandez-Losa J., Lyons R.J., Castellone M.D., Gutkind J.S. Regulation of the transcriptional activity of c-Fos by ERK. A novel role for the prolyl isomerase PIN1. J Biol Chem 2005, 280:35081-35084.
17. Fujise K., Zhang D., Liu J., Yeh E.T. Regulation of apoptosis and cell cycle progression by MCL1. Differential role of proliferating cell nuclear antigen. J Biol Chem 2000, 275:39458-39465.
18. Mori M., Burgess D.L., Gefrides L.A., Foreman P.J., Opferman J.T., Korsmeyer S.J., et al. Expression of apoptosis inhibitor protein Mcl1 linked to neuroprotection in CNS neurons. Cell Death Differ 2004, 11:1223-1233.
19. Pan S., Koyano-Nakagawa N., Tsuruta L., Amasaki Y., Yokota T., Mori S., et al. Molecular cloning and functional characterization of murine cDNA encoding transcription factor NFATc. Biochem Biophys Res Commun 1997, 240:314-323.
20. Lee E.G., Yun H.J., Lee S.I., Yoo W.H. Ethyl acetate fraction from Cudrania tricuspidata inhibits IL-1beta-stimulated osteoclast differentiation through downregulation of MAPKs, c-Fos and NFATc1. Korean J Intern Med 2010, 25:93-100.
21. Ivashkiv L.B., Liou H.C., Kara C.J., Lamph W.W., Verma I.M., Glimcher L.H. mXBP/CRE-BP2 and c-Jun form a complex which binds to the cyclic AMP, but not to the 12-O-tetradecanoylphorbol-13-acetate, response element. Mol Cell Biol 1990, 10:1609-1621.
22. Hambleton J., Weinstein S.L., Lem L., DeFranco A.L. Activation of c-Jun N-terminal kinase in bacterial lipopolysaccharide-stimulated macrophages. Proc Natl Acad Sci U S A 1996, 93:2774-2778.
23. Kovarik P., Stoiber D., Novy M., Decker T. Stat1 combines signals derived from IFN-gamma and LPS receptors during macrophage activation. EMBO J 1998, 17:3660-3668.
24. Dumitru C.D., Ceci J.D., Tsatsanis C., Kontoyiannis D., Stamatakis K., Lin J.H., et al. TNF-alpha induction by LPS is regulated posttranscriptionally via a Tpl2/ERK-dependent pathway. Cell 2000, 103:1071-1083.
25. Sternweis P.C., Carter A.M., Chen Z., Danesh S.M., Hsiung Y.F., Singer W.D. Regulation of Rho guanine nucleotide exchange factors by G proteins. Adv Protein Chem 2007, 74:189-228.
26. Yayoshi-Yamamoto S., Taniuchi I., Watanabe T. FRL, a novel formin-related protein, binds to Rac and regulates cell motility and survival of macrophages. Mol Cell Biol 2000, 20:6872-6881.
27. Choi S.H., Czifra G., Kedei N., Lewin N.E., Lazar J., Pu Y., et al. Characterization of the interaction of phorbol esters with the C1 domain of MRCK (myotonic dystrophy kinase-related Cdc42 binding kinase) alpha/beta. J Biol Chem 2008, 283:10543-10549.
28. Anton I.M., Jones G.E. WIP: a multifunctional protein involved in actin cytoskeleton regulation. Eur J Cell Biol 2006, 85:295-304.
29. Schwartz D., Gygi S.P. An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat Biotechnol 2005, 23:1391-1398.