Auxin and ABA act as central regulators of developmental networks associated with paradormancy in Canada thistle (Cirsium arvense)

Functional and Integrative Genomics

Volumn 12, Issue 3, 2012, Pages 515-531

  Anderson, James V ^a   Doğramacı, Münevver ^a   Horvath, David P ^a   Foley, Michael E ^a   Chao, Wun S ^a   Suttle, Jeffrey C ^a   Thimmapuram, Jyothi ^b   Hernandez, Alvaro G ^b   Ali, Shahjahan ^c   Mikel, Mark A ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

Author keywords

Canada thistle; Dormancy; ESTs; Hormone profiling

Indexed keywords

ABSCISIC ACID; AUXIN; COMPLEMENTARY DNA; CYTOKININ; GIBBERELLIC ACID; RNA;

ARABIDOPSIS; ARTICLE; CANADA; CELL DIFFERENTIATION; CELL DIVISION; CIRSIUM ARVENSE; CONTIG MAPPING; DNA LIBRARY; EXPRESSED SEQUENCE TAG; GENE SEQUENCE; GENETIC TRANSCRIPTION; GREENHOUSE; NONHUMAN; PERENNIAL PLANT; PLANT; PLANT ROOT; PRIORITY JOURNAL; PYROSEQUENCING; SEED DORMANCY; SHOOT; VEGETATIVE GROWTH;

ARABIDOPSIS; CIRSIUM ARVENSE;

EID: 84870294612     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-012-0280-5     Document Type: Article

References (84)

1. Achard P, Gusti A, Cheminant S, Alioua M, Dhondt S, Coppens F, Beemster GTS, Genschik P (2009) Gibberellin signaling controls cell proliferation rate in Arabidopsis. Curr Biol 19:1188-1193
2. Agarwal PK, Agarwal P, Reddy MK, Sopory SK (2006) Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep 25:1263-1274
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
4. Amor RL, Harris RV (1975) Seedling establishment and vegetative spread of Cirsium arvense (L.) Scop, in Victoria, Australia. Weed Res 15:407-411
5. Anderson JV, Gesch RW, Jia Y, Chao WS, Horvath DP (2005) Seasonal shifts in dormancy status, carbohydrate metabolism, and related gene expression in crown buds of leafy spurge. Plant Cell Environ 28:1567-1578
6. Anderson JV, Horvath DP, Chao WS, Foley ME (2010) Bud dormancy in perennial plants: a mechanism for survival. In: Lubzens E, Cerda J, Clark M (eds.) Dormancy and resistance in harsh environments. Topics in Current Genetics 21, Chapter 5, Hohmann, S. (series ed.), Springer-Verlag, Berlin Heidelberg. pp 69-90
7. Bennett T, Sieberer T, Willett B, Booker J, Luschnig C, Leyser O (2006) The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport. Curr Biol 16:553-563
8. Beveridge CA, Kyozuka J (2010) New genes in the strigolactonerelated shoot branching pathway. Curr Opin Plant Biol 13:34-39
9. Bodo-Slotta TA, Rothhouse JM, Horvath DP, Foley ME (2006) Genetic diversity of Canada thistle (Cirsium arvense) in North Dakota. Weed Sci 54:1080-1085
10. Bodo-Slotta TA, Foley ME, Chao S, Hufbauer RA, Horvath DP (2010) Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites. Weed Sci 58:87-394
11. Bork E, Grekul C, DeBruijn S, Alberta UO (2005) Management of Canada thistle in pasture. Dept. of Agricultural, Food and Nutritional Science, University of Alberta
12. Braybrook SA, Harada JJ (2008) LECs go crazy in embryo development. Trends Plant Sci 13:624-630
13. Brewer PB, Dun EA, Ferguson BJ, Rameau C, Beveridge CA (2009) Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis. Plant Physiol 150:482-493
14. Brocard-Gifford IM, Lynch TJ, Finkelstein RR (2003) Regulatory networks in seeds integrating developmental, abscisic acid, sugar, and light signaling. Plant Physiol 131:78-92
15. Chang S, Puryer J, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11:113-116
16. Chao WS (2008) Real-time PCR as a tool to study weed biology.Weed Sci 56:290-296
17. Chao WS, Horvath DP, Anderson JV, Foley ME (2005) Potential model weeds to study genomics, ecology, and physiology in the 21st century. Weed Sci 53:929-937
18. Che P, Lall S, Nettleton D, Howell SH (2006) Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol 141:620-637
19. Chiwocha SDS, Abrams SR, Ambrose SJ, Cutler AJ, Loewen M, Ross ARS, Kermode AR (2003) A method for profiling classes of plant hormones and their metabolites using liquid chromatographyelectrospray ionization tandem mass spectrometry: analysis of hormone regulation of thermodormancy of lettuce (Lactuca sativa L.) seeds. Plant J 3:405-417
20. Chiwocha SDS, Cutler AJ, Abrams SR, Ambrose SJ, Yang J, Ross ARS, Kermode AR (2005) The etr1-2 mutation in Arabidopsis thaliana affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moistchilling and germination. Plant J 42:35-48
21. Cline MG (1997) Concepts and terminology of apical dominance. Am J Bot 84:1064-1069
22. Curaba J, Moritz T, Blervaque R, Parcy F, Raz V, Herzog M, Vachon G (2004) AtGA3ox2, a key gene responsible for bioactive gibberellin biosynthesis, is regulated during embryogenesis by LEAFY COTYLEDON2 and FUSCA3 in Arabidopsis. Plant Physiol 136:3660-3669
23. Da Costa M, Bach L, Landrieu I, Bellec Y, Catrice O, Brown S, De Veylder L, Lippens G, Inze D, Faure JD (2006) Arabidopsis PASTICCINO2 is an antiphosphatase involved in regulation of cyclin-dependent kinase A. Plant Cell 18:1426- 1437
24. De Jager SM, Maughan S, Dewitte W, Scofield S, Murray JAH (2005) The developmental context of cell-cycle control in plants. Sem Cell Dev Biol 16:385-396
25. Destefano-Beltran L, Knauber D, Huckle L, Suttle JC (2006) Effects of postharvest storage and dormancy status on ABA content, metabolism, and expression of genes involved in ABA biosynthesis and metabolism in potato tuber tissues. Plant Mol Biol 61:687-697
26. Ding Z, Galván-Ampudia CS, Demarsy E, Langowski L, Kleine-Vehn J, Fan Y, Morita MT, Tasaka M, Fankhauser C, Offringa R, Friml J (2011) Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis. Nat Cell Biol 13 (4):447-452
27. Doǧramaci M, Horvath DP, Chao WS, Foley ME, Christoffers MJ, Anderson JV (2010) Low temperature impacts dormancy status, flowering competence, and transcript profiles in crown buds of leafy spurge. Plant Mol Biol 73:207-226
28. Doǧramaci M, Horvath DP, Christoffers MJ, Anderson JV (2011) Dehydration and vernalization treatments identify overlapping molecular networks impacting endodormancy maintenance in leafy spurge crown buds. Funct Integr Genomics 11:611-626
29. Donald WW (1990) Management and control of Canada thistle (Cirsium arvense). Rev Weed Sci 5:193-250
30. Donald WW (1994) The biology of Canada thistle (Cirsium arvense). Rev Weed Sci 6:77-101
31. Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95:14863-14868
32. Faivre-Rampant O, Cardle L, Marshall D, Viola R, Taylor MA (2004) Changes in gene expression during meristem activation processes in Solanum tuberosum with a focus on the regulation of an auxin response factor gene. J Exp Bot 55:613-622
33. Feng J-X, Liu D, Pan Y, GongW,Ma L-G, Luo J-C, Deng XW, Zhu Y-X (2005) An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol 59:853-868
34. Fu X, Harberd NP (2003) Auxin promotes Arabidopsis root growth by modulating gibberellin response. Nature 421:740-743
35. Gazzarrini S, Tsuchiya Y, Lumba S, Okamoto M, McCourt P (2004) The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid. Dev Cell 7:373-385
36. Grekul CW, Bork EW (2004) Herbage yield losses in perennial pasture due to Canada thistle (Cirsium arvense). Weed Tech 18:784-794
37. Grennan AK (2008) Ethylene response factors in jasmonate signaling and defense response. Plant Physiol 146:1457-1458
38. Grossmann K, Hansen H (2001) Ethylene-triggered abscisic acid: a principle in plant growth regulation? Physiol Plant 113:9-14
39. Haggar R, Oswald A, Richardson W (1986) A review of the impact and control of creeping thistle (Cirsium arvense L.) in grassland. Crop Prot 5:73-76
40. Hartmann A, Senning M, Hedden P, Sonnewald U, Sonnewald S (2011) Reactivation of meristem activity and sprout growth in potato tubers require both cytokinin and gibberellins. Plant Physiol 155:776-796
41. Hayden A (1934) Distribution and reproduction of Canada thistle in Iowa. Am J Bot 21:355-373
42. Horvath DP (1999) Role of mature leaves in inhibition of root bud growth in Euphorbia esula L. Weed Sci 47:544-550
43. Horvath DP, Soto M, Jia Y, Chao WS, Anderson JV (2005) Transcriptome analysis of paradormancy release in root buds of leafy spurge (Euphorbia esula). Weed Sci 53:795-801
44. Horvath DP, Chao WS, Suttle JC, Thimmapuram J, Anderson JV (2008) Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.). BMC Genomics 9:536-352
45. Jiang C, Fu X (2007) GA action: turning on de-DELLA repressing signaling. Curr Opin Plant Biol 10:461-465
46. Kane NC, Rieseberg LH (2008) Genetics and evolution of weedy Helianthus annuus populations: adaptation of an agricultural weed. Mol Ecol 17:384-394
47. Kendall SL, Hellwege A, Marriot P, Whalley C, Graham IA, Penfield S (2011) Induction of dormancy in Arabidopsis summer annuals requires parallel regulation of DOG1 and hormone metabolism by low temperature and CBF transcription factors. Plant Cell 23:2568-2580
48. King RW, Moritz T, Junttila O, Evans LT (2001) Long-day induction of flowering in Lolium temulentum L. involves sequential increases in specific gibberellins at the shoot apex. Plant Physiol 127:624- 632
49. Kirik V, Kolle K, Wohlfarth T, Misera S, Baumlein H (1998) Ectopic expression of a novel MYB gene modifies the architecture of the Arabidopsis inflorescence. Plant J 13:729-742
50. Křeček P, Skůpa P, Libus J, Naramoto S, Tejos R, Friml J, Zažímalová E (2009) The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biol 10:249
51. Lai Z, Kane NC, Zou Y, Rieseberg LH (2008) Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics 179:1881-1890
52. Lang GA, Early JD, Martin GC, Darnell RL (1987) Endo-, para- and ecodormancy: physiological terminology and classification for dormancy research. Hort Sci 22:371-377
53. Lazar G, Goodman HM (2006) MAX1, a regulator of the flavonoid pathway, controls vegetative axillary bud outgrowth in Arabidopsis. Proc Natl Acad Sci USA 103:472-476
54. Lee RM, Thimmapuram J, Thinglum KA, Gong G, Hernandez AG, Wright CL, Kim RW, Mikel MA, Tranel PJ (2009) Sampling the waterhemp (Amaranthus tuberculatus) genome using pyrosequencing technology. Weed Sci 57:465-469
55. León J, Rojo E, Sánchez-Serrano JJ (2001) Wound signalling in plants. J Exp Bot 52:1-9
56. López-Ráez, Juan A and Kohlen, Wouter and Charnikhova, Tatsiana and Mulder, Patrick and Undas, Anna K and Sergeant, Martin J and Verstappen, Francel and Bugg, Tim and Thompson, Andrew J and Ruyter-Spira, Carolien and Bouwmeester, Harro (2010) Does abscisic acid affect strigolactone biosynthesis? New Phytol 87:343-354
57. Magome H, Vamaguchi S, Hanada A, Kamiya Y, Oda K (2004) dwarf and delayed-flowering1, a novel Arabidopsis mutant deficient in giberellin biosynthesis because of overexpression of a putative AP2 transcription factor. Plant J 37:720-729
58. McIntyre GI (1979) Developmental studies on Euphorbia esula. Evidence of competition for water as a factor in the mechanism of root bud inhibition. Can J Bot 57:2572-2581
59. Mockaitis K, Estelle M (2008) Auxin receptors and plant development: a new signaling paradigm. Ann Rev Cell Dev Biol 24:55-80
60. Mravec J, Skůpa P, Bailly A, Hoyerová K, Krecek P, Bielach A, Petrásek J, Zhang J, Gaykova V, Stierhof YD, Dobrev PI, Schwarzerová K, Rolcík J, Seifertová D, Luschnig C, Benková E, Zazímalová E, GeislerM, Friml J (2009) Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature 459:1136-1140
61. Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M (2007) ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 19: 118-130
62. Rinne PL,Welling A, Vahala J, Ripel L, Ruonala R, Kangasjärvi J, van der Schoot C (2011) Chilling of dormant buds hyperinduces FLOWERING LOCUS T and recruits GA-inducible 1,3-betaglucanases to reopen signal conduits and release dormancy in Populus. Plant Cell 23(1):130-146
63. Riou-Khamlichi C, Huntley R, Jacqmard A, Murray JAH (1999) Arabidopsis cell division through a D-type cyclin. Science 283:1541-1544
64. SAS Institute Inc (2008) SAS® 9.2, Cary, NC, USA
65. Shen H, Luong P, Huq E (2007) The F-box protein MAX2 functions as a positive regulator of photomorphogenesis in Arabidopsis. Plant Physiol 145(4):1471-1483
66. Shimizu-Sato S, Mori H (2001) Control of outgrowth and dormancy in axillary buds. Plant Physiol 127:1405-1413
67. Skinner K, Smith L, Rice P (2000) Using noxious weed lists to prioritize targets for developing weed management strategies. Weed Sci 48:640-644
68. Sole M, Durka W, Eber S, Brandl R (2004) Genotypic and genetic diversity of the common weed Cirsium arvense (Asteraceae). Int J Plant Sci 165:437-444
69. Staswick PE (2008) JAZing up jasmonate signaling. Trends Plant Sci 13:66-71
70. Stewart CN, Tranel PJ, Horvath DP, Anderson JV, Reiseberg LH, Westwood JH, Mallory-Smith CA, Zapiola ML, Dlugosch KM (2009) Evolution of weediness and invasiveness: charting the course for weed genomics. Weed Sci 57:451-462
71. Stirnberg P, Furner IJ, Leyser HMO (2007) MAX2 participates in an SCF complex which acts locally at the node to suppress shoot branching. Plant J 50:80-94
72. Suttle JC (1998) Postharvest changes in endogenous cytokinins and cytokinin efficacy in potato tubers in relation to bud endodormancy. Physiol Plant 103:59-69
73. Suttle JC (2004) Involvement of endogenous gibberellins in potato tuber dormancy and early sprout growth: a critical assessment. J Plant Physiol 161:157-164
74. Tank JG, Thaker VS (2011) Cyclin dependent kinases and their role in regulation of plant cell cycle. Biol Plant 55:201-212
75. Tiley GED (2010) Biological flora of the British Isles: Cirsium arvence (L.) Scop. J Ecol 98:938-983
76. Tsuchiya Y, Vidaurre D, Toh S, Hanada A, Nambara E, Kamiya Y, Yamaguchi S, McCourt P (2010) A small-molecule screen identifies new functions for the plant hormone strigolactone. Nat Chem Biol 6:741-749
77. Turner RJ, Davies G, Moore H, Grundy AC, Mead A (2007) Organic weed management: A review of the current UK farmer perspective. Crop Prot 26:377-382
78. USDA, NRCS (2010) The PLANTS Database. URL http://plants.usda. gov, accessed on March 9, 2010
79. Waldie T, Hayward A, Beveridge CA (2010) Axillary bud outgrowth in herbaceous shoots: how do strigolactones fit into the picture? Plant Mol Biol 73:27-36
80. Wang H, Qi Q, Schorr P, Cutler AJ, Crosby WL, Fowke LC (1998) ICK1, a cyclin dependent protein kinase inhibitor from Arabidopsis thaliana interacts with both Cdc2a and CYCD3, and its expression is induced by abscisic acid. Plant J 15:501-510
81. Wang H, Caruso LV, Downie AB, Perry SE (2004) The embryo MADS domain protein AGAMOUS-Like 15 directly regulates expression of a gene encoding an enzyme involved in gibberellin metabolism. Plant Cell 16:1206-1219
82. Ward SP, LeyserO(2004) Shoot branching. CurrOpin Plant Biol 7:73-78
83. Wisniewski M, Norelli J, Bassett C, Artlip T, Macarisin D (2011) Ectopic expression of a novel peach (Prunus persica) CBF transcription factor in apple (Malus x Domestica) results in short-day induced dormancy and increased cold hardiness. Planta 233:971- 983
84. Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136:2621-2632