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Volumn 59, Issue 6, 2005, Pages 853-868

An Annotation Update via cDNA Sequence Analysis and Comprehensive Profiling of Developmental, Hormonal or Environmental Responsiveness of the Arabidopsis AP2/EREBP Transcription Factor Gene Family

Author keywords

AP2 EREBP; Gene family; HMM; Microarray; Transcription factor

Indexed keywords

CELLS; CLONING; GENES; HORMONES; PLANTS (BOTANY);

EID: 27944494011     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-005-1511-0     Document Type: Article
Times cited : (156)

References (45)
  • 1
    • 0032530719 scopus 로고    scopus 로고
    • A novel mode of DNA recognition by a ß-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA
    • M.D. Allen K. Yamasaki M. Ohme-Takagi M. Tateno M. Suzuki 1998 A novel mode of DNA recognition by a ß-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA EMBO J. 17 5484 5496
    • (1998) EMBO J. , vol.17 , pp. 5484-5496
    • Allen, M.D.1    Yamasaki, K.2    Ohme-Takagi, M.3    Tateno, M.4    Suzuki, M.5
  • 3
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 408 796 815
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APET ALA2-like target genes
    • M.J. Aukerman H. Sakai 2003 Regulation of flowering time and floral organ identity by a microRNA and its APET ALA2-like target genes Plant Cell 15 2730 2741
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 6
    • 0038459120 scopus 로고    scopus 로고
    • A role for the GCC-box in Jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis
    • R.L. Brown K. Kazan K.C. [tmp] McGrath D.J. Maclean J.M. Manners 2003 A role for the GCC-box in Jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis Palnt Physiol. 132 1020 1032
    • (2003) Palnt Physiol. , vol.132 , pp. 1020-1032
    • Brown, R.L.1    Kazan, K.2    McGrath, K.C.3    MacLean, D.J.4    Manners, J.M.5
  • 7
    • 0346750615 scopus 로고    scopus 로고
    • The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elements
    • S. Chakravarthy R.P. Tuori M.D. D'Ascenzo P.R. Fobert C. Despres G.B. Martin 2003 The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elements Plant Cell 15 3033 3050
    • (2003) Plant Cell , vol.15 , pp. 3033-3050
    • Chakravarthy, S.1    Tuori, R.P.2    D'Ascenzo, M.D.3    Fobert, P.R.4    Despres, C.5    Martin, G.B.6
  • 8
    • 1942475192 scopus 로고    scopus 로고
    • Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: Unprecedented sensitivity reveals novel root- and shoot-specific genes
    • T. Czechowski R.P. Bari M. Stitt W. Scheible M.K. Udvardi 2004 Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes Plant J. 38 366 379
    • (2004) Plant J. , vol.38 , pp. 366-379
    • Czechowski, T.1    Bari, R.P.2    Stitt, M.3    Scheible, W.4    Udvardi, M.K.5
  • 9
    • 0141706827 scopus 로고    scopus 로고
    • Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway
    • D.K. Dimova O. Stevaux M.V. Frolov N.J. Dyson 2003 Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway Genes Dev. 17 2308 2320
    • (2003) Genes Dev. , vol.17 , pp. 2308-2320
    • Dimova, D.K.1    Stevaux, O.2    Frolov, M.V.3    Dyson, N.J.4
  • 10
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • S.R. Eddy 1998 Profile hidden Markov models Bioinformatics 14 755 763
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 13
    • 3042725243 scopus 로고    scopus 로고
    • Regulation of disease resistance pathways by AP2/ERF transcription factors
    • N. Gutterson T.L. Reuber 2004 Regulation of disease resistance pathways by AP2/ERF transcription factors Curr. Opin. Plant Biol. 7 465 471
    • (2004) Curr. Opin. Plant Biol. , vol.7 , pp. 465-471
    • Gutterson, N.1    Reuber, T.L.2
  • 14
    • 0037694799 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factor family in plants: A genome-wide study of protein structure and functional diversity
    • M.A. Heim M. Jakoby M. Werber C. Martin B. Weisshaar P.C. Bailey 2003 The basic helix-loop-helix transcription factor family in plants: A genome-wide study of protein structure and functional diversity Mol. Biol. Evol. 20 735 747
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 735-747
    • Heim, M.A.1    Jakoby, M.2    Werber, M.3    Martin, C.4    Weisshaar, B.5    Bailey, P.C.6
  • 15
    • 0038381561 scopus 로고    scopus 로고
    • Isolation and Analyses of Genes Preferentially Expressed during Early Cotton Fiber Development by Subtractive PCR and cDNA Array
    • S.J. Ji Y.C. Lu J.X. Feng G. Wei J. Li Y.H. Shi Q. Fu D. Liu J.C. Luo Y.-X. Zhu 2003 Isolation and Analyses of Genes Preferentially Expressed During Early Cotton Fiber Development by Subtractive PCR and cDNA Array Nucleic Acids Res. 31 2534 2543
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2534-2543
    • Ji, S.J.1    Lu, Y.C.2    Feng, J.X.3    Wei, G.4    Li, J.5    Shi, Y.H.6    Fu, Q.7    Liu, D.8    Luo, J.C.9    Zhu, Y.-X.10
  • 16
    • 4844230027 scopus 로고    scopus 로고
    • Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica
    • C. Jiang X. Gu T. Peterson 2004 Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica Genome Biol. 5 R46
    • (2004) Genome Biol. , vol.5 , pp. 46
    • Jiang, C.1    Gu, X.2    Peterson, T.3
  • 18
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • D.T. Jones W.R. Taylor J.M. Thornton 1992 The rapid generation of mutation data matrices from protein sequences Bioinformatics 8 275 282
    • (1992) Bioinformatics , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 19
    • 0033556230 scopus 로고    scopus 로고
    • RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants
    • Y. Kagaya K. Ohmiya T. Hattori 1999 RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants Nucleic Acids Res. 27 470 478
    • (1999) Nucleic Acids Res. , vol.27 , pp. 470-478
    • Kagaya, Y.1    Ohmiya, K.2    Hattori, T.3
  • 20
    • 0037350568 scopus 로고    scopus 로고
    • Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray
    • H. Kim E.C. Snesrud B. Haas F. Cheung C.D. Town J. Quackenbush 2003 Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray Genome Res. 13 327 340
    • (2003) Genome Res. , vol.13 , pp. 327-340
    • Kim, H.1    Snesrud, E.C.2    Haas, B.3    Cheung, F.4    Town, C.D.5    Quackenbush, J.6
  • 21
    • 0033133352 scopus 로고    scopus 로고
    • The sfr6 mutation in Arabidopsis suppresses low-temperature induction of genes dependent on the CRT/DRE sequence motif
    • H. Knight E.L. Veale G.J. Warren M.R. Knight 1999 The sfr6 mutation in Arabidopsis suppresses low-temperature induction of genes dependent on the CRT/DRE sequence motif Plant Cell 11 875 886
    • (1999) Plant Cell , vol.11 , pp. 875-886
    • Knight, H.1    Veale, E.L.2    Warren, G.J.3    Knight, M.R.4
  • 22
    • 0038384463 scopus 로고    scopus 로고
    • The polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1
    • C. Kohler L. Hennig C. Spillane S. Pien W. Gruissem U. Grossniklaus 2003 The polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1 Genes Dev. 17 1540 1553
    • (2003) Genes Dev. , vol.17 , pp. 1540-1553
    • Kohler, C.1    Hennig, L.2    Spillane, C.3    Pien, S.4    Gruissem, W.5    Grossniklaus, U.6
  • 24
    • 24344488725 scopus 로고    scopus 로고
    • Organ-specific expression of Arabidopsis genome during development
    • L. Ma N. Sun X. Liu Y. Jiao H.Y. Zhao X.W. Deng 2005 Organ-specific expression of Arabidopsis genome during development Plant Physiol. 138 1 12
    • (2005) Plant Physiol. , vol.138 , pp. 1-12
    • Ma, L.1    Sun, N.2    Liu, X.3    Jiao, Y.4    Zhao, H.Y.5    Deng, X.W.6
  • 25
    • 4544372760 scopus 로고    scopus 로고
    • From endonucleases to transcription factors: Evolution of the AP2 DNA binding domain in plants
    • E. Magnani K. Sjolander S. Hake 2004 From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants Plant Cell 16 2265 2277
    • (2004) Plant Cell , vol.16 , pp. 2265-2277
    • Magnani, E.1    Sjolander, K.2    Hake, S.3
  • 26
    • 1542378746 scopus 로고    scopus 로고
    • Dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor
    • H. Magome S. Yamaguchi A. Hanada Y. Kamiya K. Oda 2004 dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor Plant J. 37 720 729
    • (2004) Plant J. , vol.37 , pp. 720-729
    • Magome, H.1    Yamaguchi, S.2    Hanada, A.3    Kamiya, Y.4    Oda, K.5
  • 28
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • R.D.M. Page 1996 TreeView: An application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 12 357 358
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 32
    • 0031845074 scopus 로고    scopus 로고
    • The AP2/EREBP family of plant transcription factors
    • J.L. Riechmann E.M. Meyerowitz 1998 The AP2/EREBP family of plant transcription factors Biol. Chem. 379 633 646
    • (1998) Biol. Chem. , vol.379 , pp. 633-646
    • Riechmann, J.L.1    Meyerowitz, E.M.2
  • 33
    • 0034671865 scopus 로고    scopus 로고
    • A genomic perspective on plant transcription factors
    • J.L. Riechmann O.J. Ratcliffe 2000 A genomic perspective on plant transcription factors Curr. Opin. Plant Biol. 290 2105 2110
    • (2000) Curr. Opin. Plant Biol. , vol.290 , pp. 2105-2110
    • Riechmann, J.L.1    Ratcliffe, O.J.2
  • 35
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • F. Ronquist J.P. Huelsenbeck 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 1572 1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 36
    • 0036290601 scopus 로고    scopus 로고
    • DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression
    • Y. Sakuma Q. Liu J.G. Dubouzet H. Abe K. Shinozaki K. Yamaguchi-Shinozaki 2002 DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression Biochem. Biophys. Res. Comm. 290 998 1009
    • (2002) Biochem. Biophys. Res. Comm. , vol.290 , pp. 998-1009
    • Sakuma, Y.1    Liu, Q.2    Dubouzet, J.G.3    Abe, H.4    Shinozaki, K.5    Yamaguchi-Shinozaki, K.6
  • 39
    • 0032417391 scopus 로고    scopus 로고
    • Nuclear events in ethylene signaling: Atranscriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
    • R. Solano A. Stepanova Q. Chao J.R. Ecker 1998 Nuclear events in ethylene signaling: atranscriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1 Genes & Deve. 12 3703 3714
    • (1998) Genes & Deve. , vol.12 , pp. 3703-3714
    • Solano, R.1    Stepanova, A.2    Chao, Q.3    Ecker, J.R.4
  • 40
    • 0031017671 scopus 로고    scopus 로고
    • Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit
    • E.J. Stockinger S.J. Gilmour M.F. Thomashow 1997 Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit Proc. Natl. Acad. Sci. USA 94 1035 1040
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1035-1040
    • Stockinger, E.J.1    Gilmour, S.J.2    Thomashow, M.F.3
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • J.D. Thompson D.G. Higgins T.J. Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 4673 4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0042421751 scopus 로고    scopus 로고
    • The Arabidopsis basic/helix-loop-helix transcription factor family
    • G. Toledo-Ortiz E. Huq P.H. Quail 2003 The Arabidopsis basic/helix-loop-helix transcription factor family Plant Cell 15 1749 1770
    • (2003) Plant Cell , vol.15 , pp. 1749-1770
    • Toledo-Ortiz, G.1    Huq, E.2    Quail, P.H.3
  • 44
    • 16544395778 scopus 로고    scopus 로고
    • The pepper transcription factor CαPF1 confers pathogen and freezing tolerance in Arabidopsis
    • S.Y. Yi J.-H. Kim Y.-H. Joung S. Lee W.-T. Kim S.H. Yu D. Choi 2004 The pepper transcription factor CαPF1 confers pathogen and freezing tolerance in Arabidopsis Plant Physiol. 136 2862 2874
    • (2004) Plant Physiol. , vol.136 , pp. 2862-2874
    • Yi, S.Y.1    Kim, J.-H.2    Joung, Y.-H.3    Lee, S.4    Kim, W.-T.5    Yu, S.H.6    Choi, D.7
  • 45


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.