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Volumn 47, Issue 1, 2013, Pages 16-30

Fecal source tracking in water using a mitochondrial DNA microarray

Author keywords

DNA microarray; Fecal; Mitochondria; PCR clamping; Peptide nucleic acid; Quantitative PCR; Source tracking

Indexed keywords

EXTRACTION; FISH; MITOCHONDRIA; OLIGONUCLEOTIDES; PEPTIDES; POLYMERASE CHAIN REACTION; PROBES; RNA; WATER POLLUTION;

EID: 84870064707     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2012.09.011     Document Type: Article
Times cited : (26)

References (44)
  • 1
    • 78650227954 scopus 로고    scopus 로고
    • One health-attaining optimal health for people, animals, and the environment
    • Atlas R., Rubin C., Maloy S., Daszak P., Colwell R., Hyde B. One health-attaining optimal health for people, animals, and the environment. Microbe 2010, 5(9):383-389.
    • (2010) Microbe , vol.5 , Issue.9 , pp. 383-389
    • Atlas, R.1    Rubin, C.2    Maloy, S.3    Daszak, P.4    Colwell, R.5    Hyde, B.6
  • 2
    • 0037674026 scopus 로고    scopus 로고
    • A method for the detection and quantification of bacteria in human carious dentine using fluorescent in situ hybridisation
    • Banerjee A., Yasseri M., Munson M. A method for the detection and quantification of bacteria in human carious dentine using fluorescent in situ hybridisation. Journal of Dentistry 2002, 30(7-8):359-363.
    • (2002) Journal of Dentistry , vol.30 , Issue.7-8 , pp. 359-363
    • Banerjee, A.1    Yasseri, M.2    Munson, M.3
  • 3
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
    • Bernhard A.E., Field K.G. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Applied and Environmental Microbiology 2000, 66(10):4571-4574.
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.10 , pp. 4571-4574
    • Bernhard, A.E.1    Field, K.G.2
  • 4
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • Bernhard A.E., Field K.G. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Applied and Environmental Microbiology 2000, 66(4):1587-1594.
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.4 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 6
    • 62349119949 scopus 로고    scopus 로고
    • Domestic wastewater influent profiling using mitochondrial real-time PCR for source tracking animal contamination
    • Caldwell J.M., Levine J.F. Domestic wastewater influent profiling using mitochondrial real-time PCR for source tracking animal contamination. Journal of Microbiological Methods 2009, 77(1):17-22.
    • (2009) Journal of Microbiological Methods , vol.77 , Issue.1 , pp. 17-22
    • Caldwell, J.M.1    Levine, J.F.2
  • 7
    • 34248228283 scopus 로고    scopus 로고
    • Mitochondrial multiplex real-time PCR as a source tracking method in fecal-contaminated effluents
    • Caldwell J.M., Raley M.E., Levine J.F. Mitochondrial multiplex real-time PCR as a source tracking method in fecal-contaminated effluents. Environmental Science & Technology 2007, 41(9):3277-3283.
    • (2007) Environmental Science & Technology , vol.41 , Issue.9 , pp. 3277-3283
    • Caldwell, J.M.1    Raley, M.E.2    Levine, J.F.3
  • 8
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • Call D.R., Borucki M.K., Loge F.J. Detection of bacterial pathogens in environmental samples using DNA microarrays. Journal of Microbiological Methods 2003, 53(2):235-243.
    • (2003) Journal of Microbiological Methods , vol.53 , Issue.2 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 10
    • 1542315369 scopus 로고    scopus 로고
    • Evaluation of a plasmid-based 16S-23S rDNA intergenic spacer region array for analysis of microbial diversity in industrial wastewater
    • Cook K.L., Layton A.C., Dionisi H.M., Fleming J.T., Sayler G.S. Evaluation of a plasmid-based 16S-23S rDNA intergenic spacer region array for analysis of microbial diversity in industrial wastewater. Journal of Microbiological Methods 2004, 57(1):79-93.
    • (2004) Journal of Microbiological Methods , vol.57 , Issue.1 , pp. 79-93
    • Cook, K.L.1    Layton, A.C.2    Dionisi, H.M.3    Fleming, J.T.4    Sayler, G.S.5
  • 11
    • 0026745606 scopus 로고
    • Some modifications in the procedure of direct sequencing of PCR amplified 16S rDNA
    • Dorsch M., Stackebrandt E. Some modifications in the procedure of direct sequencing of PCR amplified 16S rDNA. Journal of Microbiological Methods 1992, 16(4):271-279.
    • (1992) Journal of Microbiological Methods , vol.16 , Issue.4 , pp. 271-279
    • Dorsch, M.1    Stackebrandt, E.2
  • 13
    • 34547531503 scopus 로고    scopus 로고
    • Fecal source tracking, the indicator paradigm, and managing water quality
    • Field K.G., Samadpour M. Fecal source tracking, the indicator paradigm, and managing water quality. Water Research 2007, 41(16):3517-3538.
    • (2007) Water Research , vol.41 , Issue.16 , pp. 3517-3538
    • Field, K.G.1    Samadpour, M.2
  • 17
    • 0345269729 scopus 로고    scopus 로고
    • A fatal waterborne disease epidemic in Walkerton, Ontario: comparison with other waterborne outbreaks in the developed world
    • Hrudey S.E., Payment P., Huck P.M., Gillham R.W., Hrudey E.J. A fatal waterborne disease epidemic in Walkerton, Ontario: comparison with other waterborne outbreaks in the developed world. Water Science and Technology 2003, 47:7-14.
    • (2003) Water Science and Technology , vol.47 , pp. 7-14
    • Hrudey, S.E.1    Payment, P.2    Huck, P.M.3    Gillham, R.W.4    Hrudey, E.J.5
  • 19
    • 0025719674 scopus 로고
    • Human stools as a source of viable colonic epithelial cells
    • Iyengar V., Albaugh G.P., Lohani A., Nair P.P. Human stools as a source of viable colonic epithelial cells. The FASEB Journal 1991, 5(13):2856-2859.
    • (1991) The FASEB Journal , vol.5 , Issue.13 , pp. 2856-2859
    • Iyengar, V.1    Albaugh, G.P.2    Lohani, A.3    Nair, P.P.4
  • 22
    • 63449089622 scopus 로고    scopus 로고
    • Universal mitochondrial PCR combined with species-specific dot-blot assay as a source-tracking method of human, bovine, chicken, ovine, and porcine in fecal-contaminated surface water
    • Kortbaoui R., Locas A., Imbeau M., Payment P., Villemur R. Universal mitochondrial PCR combined with species-specific dot-blot assay as a source-tracking method of human, bovine, chicken, ovine, and porcine in fecal-contaminated surface water. Water Research 2009, 43(7):2002-2010.
    • (2009) Water Research , vol.43 , Issue.7 , pp. 2002-2010
    • Kortbaoui, R.1    Locas, A.2    Imbeau, M.3    Payment, P.4    Villemur, R.5
  • 24
    • 23744433384 scopus 로고    scopus 로고
    • Statistical analyses: possible reasons for unreliability of source tracking efforts
    • Lasalde C., Rodriguez R., Toranzos G.A. Statistical analyses: possible reasons for unreliability of source tracking efforts. Applied and Environmental Microbiology 2005, 71(8):4690-4695.
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.8 , pp. 4690-4695
    • Lasalde, C.1    Rodriguez, R.2    Toranzos, G.A.3
  • 25
    • 4344642211 scopus 로고    scopus 로고
    • Molecular biology and DNA microarray technology for microbial quality monitoring of water
    • Lemarchand K., Masson L., Brousseau R. Molecular biology and DNA microarray technology for microbial quality monitoring of water. Critical Reviews in Microbiology 2004, 30(3):145-172.
    • (2004) Critical Reviews in Microbiology , vol.30 , Issue.3 , pp. 145-172
    • Lemarchand, K.1    Masson, L.2    Brousseau, R.3
  • 26
    • 27544440629 scopus 로고    scopus 로고
    • A highly sensitive polymerase chain reaction method detects activating mutations of the GNAS gene in peripheral blood cells in McCune-Albright syndrome or isolated fibrous dysplasia
    • Lietman S.A., Ding C., Levine M.A. A highly sensitive polymerase chain reaction method detects activating mutations of the GNAS gene in peripheral blood cells in McCune-Albright syndrome or isolated fibrous dysplasia. The Journal of Bone and Joint Surgery. American Volume 2005, 87(11):2489-2494.
    • (2005) The Journal of Bone and Joint Surgery. American Volume , vol.87 , Issue.11 , pp. 2489-2494
    • Lietman, S.A.1    Ding, C.2    Levine, M.A.3
  • 28
    • 77649204118 scopus 로고    scopus 로고
    • Distribution and diversity of Escherichia coli populations in the South Nation River Drainage Basin, Eastern Ontario, Canada
    • Lyautey E., Lu Z., Lapen D.R., Wilkes G., Scott A., Berkers T., Edge T.A., Topp E. Distribution and diversity of Escherichia coli populations in the South Nation River Drainage Basin, Eastern Ontario, Canada. Applied and Environmental Microbiology 2010, 76(5):1486-1496.
    • (2010) Applied and Environmental Microbiology , vol.76 , Issue.5 , pp. 1486-1496
    • Lyautey, E.1    Lu, Z.2    Lapen, D.R.3    Wilkes, G.4    Scott, A.5    Berkers, T.6    Edge, T.A.7    Topp, E.8
  • 29
    • 13544249833 scopus 로고    scopus 로고
    • Use of eukaryotic mitochondrial DNA to differentiate human, bovine, porcine and ovine sources in fecally contaminated surface water
    • Martellini A., Payment P., Villemur R. Use of eukaryotic mitochondrial DNA to differentiate human, bovine, porcine and ovine sources in fecally contaminated surface water. Water Research 2005, 39(4):541-548.
    • (2005) Water Research , vol.39 , Issue.4 , pp. 541-548
    • Martellini, A.1    Payment, P.2    Villemur, R.3
  • 32
    • 66249125965 scopus 로고    scopus 로고
    • Estimation of pig fecal contamination in a river catchment by real-time PCR using two pig-specific Bacteroidales 16S rRNA genetic markers
    • Mieszkin S., Furet J.-P., Corthier G., Gourmelon M. Estimation of pig fecal contamination in a river catchment by real-time PCR using two pig-specific Bacteroidales 16S rRNA genetic markers. Applied and Environmental Microbiology 2009, 75(10):3045-3054.
    • (2009) Applied and Environmental Microbiology , vol.75 , Issue.10 , pp. 3045-3054
    • Mieszkin, S.1    Furet, J.-P.2    Corthier, G.3    Gourmelon, M.4
  • 33
    • 76449119604 scopus 로고    scopus 로고
    • Phylogenetic analysis of Bacteroidales 16S rRNA gene sequences from human and animal effluents and assessment of ruminant faecal pollution by real-time PCR
    • Mieszkin S., Yala J.F., Joubrel R., Gourmelon M. Phylogenetic analysis of Bacteroidales 16S rRNA gene sequences from human and animal effluents and assessment of ruminant faecal pollution by real-time PCR. Journal of Applied Microbiology 2010, 108(3):974-984.
    • (2010) Journal of Applied Microbiology , vol.108 , Issue.3 , pp. 974-984
    • Mieszkin, S.1    Yala, J.F.2    Joubrel, R.3    Gourmelon, M.4
  • 34
    • 34547476651 scopus 로고    scopus 로고
    • Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution
    • Santo Domingo J.W., Bambic D.G., Edge T.A., Wuertz S. Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution. Water Research 2007, 41(16):3539-3552.
    • (2007) Water Research , vol.41 , Issue.16 , pp. 3539-3552
    • Santo Domingo, J.W.1    Bambic, D.G.2    Edge, T.A.3    Wuertz, S.4
  • 35
    • 0034078048 scopus 로고    scopus 로고
    • Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future
    • Ray A., Nordén B. Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future. The FASEB Journal 2000, 14(9):1041-1060.
    • (2000) The FASEB Journal , vol.14 , Issue.9 , pp. 1041-1060
    • Ray, A.1    Nordén, B.2
  • 36
    • 0023762872 scopus 로고
    • Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells
    • Robin E.D., Wong R. Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells. Journal of Cellular Physiology 1988, 136(3):507-513.
    • (1988) Journal of Cellular Physiology , vol.136 , Issue.3 , pp. 507-513
    • Robin, E.D.1    Wong, R.2
  • 37
    • 79952574163 scopus 로고    scopus 로고
    • State of the art molecular markers for fecal pollution source tracking in water
    • Roslev P., Bukh A. State of the art molecular markers for fecal pollution source tracking in water. Applied Microbiology and Biotechnology 2011, 89(5):1341-1355.
    • (2011) Applied Microbiology and Biotechnology , vol.89 , Issue.5 , pp. 1341-1355
    • Roslev, P.1    Bukh, A.2
  • 38
    • 48249129596 scopus 로고    scopus 로고
    • Real-time PCR detection and quantification of nine potential sources of fecal contamination by analysis of mitochondrial cytochrome b targets
    • Schill W.B., Mathes M.V. Real-time PCR detection and quantification of nine potential sources of fecal contamination by analysis of mitochondrial cytochrome b targets. Environmental Science & Technology 2008, 42(14):5229-5234.
    • (2008) Environmental Science & Technology , vol.42 , Issue.14 , pp. 5229-5234
    • Schill, W.B.1    Mathes, M.V.2
  • 42
    • 34247622189 scopus 로고    scopus 로고
    • Performance, design, and analysis in microbial source tracking studies
    • Stoeckel D.M., Harwood V.J. Performance, design, and analysis in microbial source tracking studies. Applied and Environmental Microbiology 2007, 73(8):2405-2415.
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.8 , pp. 2405-2415
    • Stoeckel, D.M.1    Harwood, V.J.2
  • 43
    • 7044228003 scopus 로고    scopus 로고
    • High-sensitivity detection of the A3243G mutation of mitochondrial DNA by a combination of allele-specific PCR and peptide nucleic acid-directed PCR clamping
    • Urata M., Wada Y., Kim S.H., Chumpia W., Kayamori Y., Hamasaki N., Kang D. High-sensitivity detection of the A3243G mutation of mitochondrial DNA by a combination of allele-specific PCR and peptide nucleic acid-directed PCR clamping. Clinical Chemistry 2004, 50(11):2045-2051.
    • (2004) Clinical Chemistry , vol.50 , Issue.11 , pp. 2045-2051
    • Urata, M.1    Wada, Y.2    Kim, S.H.3    Chumpia, W.4    Kayamori, Y.5    Hamasaki, N.6    Kang, D.7
  • 44


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.