-
2
-
-
0027382270
-
Thinking about genetic redundancy
-
Thomas JH (1993) Thinking about genetic redundancy. Trends Genet 9(11):395-399.
-
(1993)
Trends Genet
, vol.9
, Issue.11
, pp. 395-399
-
-
Thomas, J.H.1
-
3
-
-
1642266935
-
Gene duplication and biased functional retention of paralogs in bacterial genomes
-
Gevers D, Vandepoele K, Simillon C, Van de Peer Y (2004) Gene duplication and biased functional retention of paralogs in bacterial genomes. Trends Microbiol 12(4):148-154.
-
(2004)
Trends Microbiol
, vol.12
, Issue.4
, pp. 148-154
-
-
Gevers, D.1
Vandepoele, K.2
Simillon, C.3
Van De Peer, Y.4
-
4
-
-
34548527460
-
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
-
Tirosh I, Barkai N (2007) Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol 8(4):R50.
-
(2007)
Genome Biol
, vol.8
, Issue.4
-
-
Tirosh, I.1
Barkai, N.2
-
5
-
-
0034836991
-
Intrinsically driven changes in gene interaction complexity, I: Growth of regulatory complexes and increase in number of genes
-
Zuckerkandl E (2001) Intrinsically driven changes in gene interaction complexity, I: Growth of regulatory complexes and increase in number of genes. J Mol Evol 53(4-5): 539-554.
-
(2001)
J Mol Evol
, vol.53
, Issue.4-5
, pp. 539-554
-
-
Zuckerkandl, E.1
-
6
-
-
0035895278
-
Genetic architecture of thermal adaptation in Escherichia coli
-
Riehle MM, Bennett AF, Long AD (2001) Genetic architecture of thermal adaptation in Escherichia coli. Proc Natl Acad Sci USA 98(2):525-530.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.2
, pp. 525-530
-
-
Riehle, M.M.1
Bennett, A.F.2
Long, A.D.3
-
7
-
-
76849091721
-
New insights into the regulatory networks of paralogous genes in bacteria
-
Martínez-Núñez MA, Pérez-Rueda E, Gutiérrez-Ríos RM, Merino E (2010) New insights into the regulatory networks of paralogous genes in bacteria. Microbiology 156(Pt 1): 14-22.
-
(2010)
Microbiology
, vol.156
, Issue.PART 1
, pp. 14-22
-
-
Martínez-Núñez, M.A.1
Pérez-Rueda, E.2
Gutiérrez-Ríos, R.M.3
Merino, E.4
-
8
-
-
33746793855
-
The regulatory utilization of genetic redundancy through responsive backup circuits
-
Kafri R, Levy M, Pilpel Y (2006) The regulatory utilization of genetic redundancy through responsive backup circuits. Proc Natl Acad Sci USA 103(31):11653-11658.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.31
, pp. 11653-11658
-
-
Kafri, R.1
Levy, M.2
Pilpel, Y.3
-
9
-
-
0035685204
-
Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1
-
Mavrodi DV, et al. (2001) Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1. J Bacteriol 183 (21):6454-6465.
-
(2001)
J Bacteriol
, vol.183
, Issue.21
, pp. 6454-6465
-
-
Mavrodi, D.V.1
-
10
-
-
73549097081
-
Pseudomonas aeruginosa exotoxin pyocyanin causes cystic fibrosis airway pathogenesis
-
Caldwell CC, et al. (2009) Pseudomonas aeruginosa exotoxin pyocyanin causes cystic fibrosis airway pathogenesis. Am J Pathol 175(6):2473-2488.
-
(2009)
Am J Pathol
, vol.175
, Issue.6
, pp. 2473-2488
-
-
Caldwell, C.C.1
-
11
-
-
0344198520
-
Human targets of Pseudomonas aeruginosa pyocyanin
-
Ran H, Hassett DJ, Lau GW (2003) Human targets of Pseudomonas aeruginosa pyocyanin. Proc Natl Acad Sci USA 100(24):14315-14320.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.24
, pp. 14315-14320
-
-
Ran, H.1
Hassett, D.J.2
Lau, G.W.3
-
12
-
-
0029035765
-
Common virulence factors for bacterial pathogenicity in plants and animals
-
Rahme LG, et al. (1995) Common virulence factors for bacterial pathogenicity in plants and animals. Science 268(5219):1899-1902.
-
(1995)
Science
, vol.268
, Issue.5219
, pp. 1899-1902
-
-
Rahme, L.G.1
-
13
-
-
59849121929
-
Modeling Pseudomonas aeruginosa pathogenesis in plant hosts
-
Starkey M, Rahme LG (2009) Modeling Pseudomonas aeruginosa pathogenesis in plant hosts. Nat Protoc 4(2):117-124.
-
(2009)
Nat Protoc
, vol.4
, Issue.2
, pp. 117-124
-
-
Starkey, M.1
Rahme, L.G.2
-
14
-
-
0026322194
-
Response of Pseudomonas aeruginosa to pyocyanin: Mechanisms of resistance, antioxidant defenses, and demonstration of a manganese-cofactored superoxide dismutase
-
Hassett DJ, Charniga L, Bean K, Ohman DE, Cohen MS (1992) Response of Pseudomonas aeruginosa to pyocyanin: Mechanisms of resistance, antioxidant defenses, and demonstration of a manganese-cofactored superoxide dismutase. Infect Immun 60(2): 328-336.
-
(1992)
Infect Immun
, vol.60
, Issue.2
, pp. 328-336
-
-
Hassett, D.J.1
Charniga, L.2
Bean, K.3
Ohman, D.E.4
Cohen, M.S.5
-
15
-
-
50649098819
-
Redox-active antibiotics control gene expression and community behavior in divergent bacteria
-
Dietrich LE, Teal TK, Price-Whelan A, Newman DK (2008) Redox-active antibiotics control gene expression and community behavior in divergent bacteria. Science 321 (5893):1203-1206.
-
(2008)
Science
, vol.321
, Issue.5893
, pp. 1203-1206
-
-
Dietrich, L.E.1
Teal, T.K.2
Price-Whelan, A.3
Newman, D.K.4
-
16
-
-
75749090020
-
Diversity and evolution of the phenazine biosynthesis pathway
-
Mavrodi DV, et al. (2010) Diversity and evolution of the phenazine biosynthesis pathway. Appl Environ Microbiol 76(3):866-879.
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.3
, pp. 866-879
-
-
Mavrodi, D.V.1
-
17
-
-
0018362567
-
Biosynthesis of phenazine pigments in mutant and wild-type cultures of Pseudomonas aeruginosa
-
Byng GS, Eustice DC, Jensen RA (1979) Biosynthesis of phenazine pigments in mutant and wild-type cultures of Pseudomonas aeruginosa. J Bacteriol 138(3):846-852.
-
(1979)
J Bacteriol
, vol.138
, Issue.3
, pp. 846-852
-
-
Byng, G.S.1
Eustice, D.C.2
Jensen, R.A.3
-
18
-
-
0015276616
-
Pigments of Pseudomonas species, IV: In vitro and in vivo conversion of 5-methylphenazinium-1-carboxylate into aeruginosin A
-
Hansford GS, Holliman FG, Herbert RB (1972) Pigments of Pseudomonas species, IV: In vitro and in vivo conversion of 5-methylphenazinium-1- carboxylate into aeruginosin A. J Chem Soc Perkin Trans 1 1:103-105.
-
(1972)
J Chem Soc Perkin Trans 1
, vol.1
, pp. 103-105
-
-
Hansford, G.S.1
Holliman, F.G.2
Herbert, R.B.3
-
19
-
-
0034830307
-
Promoter specificity elements in Pseudomonas aeruginosa quorum-sensing-controlled genes
-
Whiteley M, Greenberg EP (2001) Promoter specificity elements in Pseudomonas aeruginosa quorum-sensing-controlled genes. J Bacteriol 183(19):5529-5534.
-
(2001)
J Bacteriol
, vol.183
, Issue.19
, pp. 5529-5534
-
-
Whiteley, M.1
Greenberg, E.P.2
-
20
-
-
0033598693
-
Identification of genes controlled by quorum sensing in Pseudomonas aeruginosa
-
Whiteley M, Lee KM, Greenberg EP (1999) Identification of genes controlled by quorum sensing in Pseudomonas aeruginosa. Proc Natl Acad Sci USA 96(24):13904-13909.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.24
, pp. 13904-13909
-
-
Whiteley, M.1
Lee, K.M.2
Greenberg, E.P.3
-
21
-
-
8644231700
-
Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR
-
Schuster M, Urbanowski ML, Greenberg EP (2004) Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR. Proc Natl Acad Sci USA 101(45):15833-15839.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.45
, pp. 15833-15839
-
-
Schuster, M.1
Urbanowski, M.L.2
Greenberg, E.P.3
-
22
-
-
14544284036
-
The contribution of MvfR to Pseudomonas aeruginosa pathogenesis and quorum sensing circuitry regulation: Multiple quorum sensing-regulated genes are modulated without affecting lasRI, rhlRI or the production of N-acyl-L-homoserine lactones
-
Déziel E, et al. (2005) The contribution of MvfR to Pseudomonas aeruginosa pathogenesis and quorum sensing circuitry regulation: Multiple quorum sensing-regulated genes are modulated without affecting lasRI, rhlRI or the production of N-acyl-L-homoserine lactones. Mol Microbiol 55(4):998-1014.
-
(2005)
Mol Microbiol
, vol.55
, Issue.4
, pp. 998-1014
-
-
Déziel, E.1
-
23
-
-
33751376744
-
MvfR, a key Pseudomonas aeruginosa pathogenicity LTTR-class regulatory protein, has dual ligands
-
Xiao G, et al. (2006) MvfR, a key Pseudomonas aeruginosa pathogenicity LTTR-class regulatory protein, has dual ligands. Mol Microbiol 62(6):1689-1699.
-
(2006)
Mol Microbiol
, vol.62
, Issue.6
, pp. 1689-1699
-
-
Xiao, G.1
-
24
-
-
33646232999
-
A distinct QscR regulon in the Pseudomonas aeruginosa quorum-sensing circuit
-
Lequette Y, Lee JH, Ledgham F, Lazdunski A, Greenberg EP (2006) A distinct QscR regulon in the Pseudomonas aeruginosa quorum-sensing circuit. J Bacteriol 188(9):3365-3370.
-
(2006)
J Bacteriol
, vol.188
, Issue.9
, pp. 3365-3370
-
-
Lequette, Y.1
Lee, J.H.2
Ledgham, F.3
Lazdunski, A.4
Greenberg, E.P.5
-
25
-
-
0035956915
-
QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa
-
Chugani SA, et al. (2001) QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa. Proc Natl Acad Sci USA 98(5):2752-2757.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.5
, pp. 2752-2757
-
-
Chugani, S.A.1
-
26
-
-
77952952807
-
Phenazines affect biofilm formation by Pseudomonas aeruginosa in similar ways at various scales
-
Ramos I, Dietrich LE, Price-Whelan A, Newman DK (2010) Phenazines affect biofilm formation by Pseudomonas aeruginosa in similar ways at various scales. Res Microbiol 161(3):187-191.
-
(2010)
Res Microbiol
, vol.161
, Issue.3
, pp. 187-191
-
-
Ramos, I.1
Dietrich, L.E.2
Price-Whelan, A.3
Newman, D.K.4
-
27
-
-
33747082622
-
The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa
-
Dietrich LE, Price-Whelan A, Petersen A, Whiteley M, Newman DK (2006) The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa. Mol Microbiol 61(5):1308-1321.
-
(2006)
Mol Microbiol
, vol.61
, Issue.5
, pp. 1308-1321
-
-
Dietrich, L.E.1
Price-Whelan, A.2
Petersen, A.3
Whiteley, M.4
Newman, D.K.5
-
28
-
-
70349901073
-
Temperature-dependent expression of phzM and its regulatory genes lasI and ptsP in rhizosphere isolate Pseudomonas sp. strain M18
-
Huang J, et al. (2009) Temperature-dependent expression of phzM and its regulatory genes lasI and ptsP in rhizosphere isolate Pseudomonas sp. strain M18. Appl Environ Microbiol 75(20):6568-6580.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.20
, pp. 6568-6580
-
-
Huang, J.1
-
30
-
-
0842320989
-
Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication
-
Déziel E, et al. (2004) Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2- heptylquinoline in cell-to-cell communication. Proc Natl Acad Sci USA 101(5):1339-1344.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.5
, pp. 1339-1344
-
-
Déziel, E.1
-
31
-
-
2442612988
-
Electrospray/mass spectrometric identification and analysis of 4-hydroxy-2-alkylquinolines (HAQs) produced by Pseudomonas aeruginosa
-
Lépine F, Milot S, Déziel E, He J, Rahme LG (2004) Electrospray/mass spectrometric identification and analysis of 4-hydroxy-2-alkylquinolines (HAQs) produced by Pseudomonas aeruginosa. J Am Soc Mass Spectrom 15(6):862-869.
-
(2004)
J Am Soc Mass Spectrom
, vol.15
, Issue.6
, pp. 862-869
-
-
Lépine, F.1
Milot, S.2
Déziel, E.3
He, J.4
Rahme, L.G.5
-
32
-
-
0036889038
-
Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa
-
Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C (2002) Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa. J Bacteriol 184(23):6472-6480.
-
(2002)
J Bacteriol
, vol.184
, Issue.23
, pp. 6472-6480
-
-
Gallagher, L.A.1
McKnight, S.L.2
Kuznetsova, M.S.3
Pesci, E.C.4
Manoil, C.5
-
33
-
-
38949155961
-
Pseudomonas aeruginosa PqsA is an anthranilate-coenzyme A ligase
-
Coleman JP, et al. (2008) Pseudomonas aeruginosa PqsA is an anthranilate-coenzyme A ligase. J Bacteriol 190(4):1247-1255.
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1247-1255
-
-
Coleman, J.P.1
-
34
-
-
0036889484
-
Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants
-
D'Argenio DA, Calfee MW, Rainey PB, Pesci EC (2002) Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants. J Bacteriol 184(23):6481-6489.
-
(2002)
J Bacteriol
, vol.184
, Issue.23
, pp. 6481-6489
-
-
D'Argenio, D.A.1
Calfee, M.W.2
Rainey, P.B.3
Pesci, E.C.4
-
35
-
-
55749096264
-
PqsE functions independently of PqsR-Pseudomonas quinolone signal and enhances the rhl quorum-sensing system
-
Farrow JM, 3rd, et al. (2008) PqsE functions independently of PqsR-Pseudomonas quinolone signal and enhances the rhl quorum-sensing system. J Bacteriol 190(21): 7043-7051.
-
(2008)
J Bacteriol
, vol.190
, Issue.21
, pp. 7043-7051
-
-
Farrow III, J.M.1
-
36
-
-
70249086931
-
Drosophila melanogaster as a model host for studying Pseudomonas aeruginosa infection
-
Apidianakis Y, Rahme LG (2009) Drosophila melanogaster as a model host for studying Pseudomonas aeruginosa infection. Nat Protoc 4(9):1285-1294.
-
(2009)
Nat Protoc
, vol.4
, Issue.9
, pp. 1285-1294
-
-
Apidianakis, Y.1
Rahme, L.G.2
-
37
-
-
3042550379
-
Pseudomonas aeruginosa pyocyanin is critical for lung infection in mice
-
Lau GW, Ran H, Kong F, Hassett DJ, Mavrodi D (2004) Pseudomonas aeruginosa pyocyanin is critical for lung infection in mice. Infect Immun 72(7):4275-4278.
-
(2004)
Infect Immun
, vol.72
, Issue.7
, pp. 4275-4278
-
-
Lau, G.W.1
Ran, H.2
Kong, F.3
Hassett, D.J.4
Mavrodi, D.5
-
38
-
-
0036167851
-
Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients
-
Worlitzsch D, et al. (2002) Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients. J Clin Invest 109(3):317-325.
-
(2002)
J Clin Invest
, vol.109
, Issue.3
, pp. 317-325
-
-
Worlitzsch, D.1
-
39
-
-
79955761635
-
Regulatory feedback loop of two phz gene clusters through 5′-untranslated regions in Pseudomonas sp. M18
-
Li Y, et al. (2011) Regulatory feedback loop of two phz gene clusters through 5′-untranslated regions in Pseudomonas sp. M18. PLoS ONE 6(4):e19413.
-
(2011)
PLoS ONE
, vol.6
, Issue.4
-
-
Li, Y.1
-
40
-
-
77956637819
-
Oxygen levels rapidly modulate Pseudomonas aeruginosa social behaviours via substrate limitation of PqsH
-
Schertzer JW, Brown SA, Whiteley M (2010) Oxygen levels rapidly modulate Pseudomonas aeruginosa social behaviours via substrate limitation of PqsH. Mol Microbiol 77(6):1527-1538.
-
(2010)
Mol Microbiol
, vol.77
, Issue.6
, pp. 1527-1538
-
-
Schertzer, J.W.1
Brown, S.A.2
Whiteley, M.3
-
41
-
-
23044512239
-
Modulation of lung epithelial functions by Pseudomonas aeruginosa
-
Lau GW, Hassett DJ, Britigan BE (2005) Modulation of lung epithelial functions by Pseudomonas aeruginosa. Trends Microbiol 13(8):389-397.
-
(2005)
Trends Microbiol
, vol.13
, Issue.8
, pp. 389-397
-
-
Lau, G.W.1
Hassett, D.J.2
Britigan, B.E.3
-
42
-
-
58149290251
-
The Pseudomonas toxin pyocyanin inhibits the dual oxidase-based antimicrobial system as it imposes oxidative stress on airway epithelial cells
-
Rada B, Lekstrom K, Damian S, Dupuy C, Leto TL (2008) The Pseudomonas toxin pyocyanin inhibits the dual oxidase-based antimicrobial system as it imposes oxidative stress on airway epithelial cells. J Immunol 181(7):4883-4893.
-
(2008)
J Immunol
, vol.181
, Issue.7
, pp. 4883-4893
-
-
Rada, B.1
Lekstrom, K.2
Damian, S.3
Dupuy, C.4
Leto, T.L.5
-
43
-
-
34548475303
-
Pyocyanin alters redox homeostasis and carbon flux through central metabolic pathways in Pseudomonas aeruginosa PA14
-
Price-Whelan A, Dietrich LE, Newman DK (2007) Pyocyanin alters redox homeostasis and carbon flux through central metabolic pathways in Pseudomonas aeruginosa PA14. J Bacteriol 189(17):6372-6381.
-
(2007)
J Bacteriol
, vol.189
, Issue.17
, pp. 6372-6381
-
-
Price-Whelan, A.1
Dietrich, L.E.2
Newman, D.K.3
-
44
-
-
79960419185
-
Phenazine-1-carboxylic acid promotes bacterial biofilm development via ferrous iron acquisition
-
Wang Y, et al. (2011) Phenazine-1-carboxylic acid promotes bacterial biofilm development via ferrous iron acquisition. J Bacteriol 193(14):3606-3617.
-
(2011)
J Bacteriol
, vol.193
, Issue.14
, pp. 3606-3617
-
-
Wang, Y.1
-
45
-
-
0033972072
-
The probability of duplicate gene preservation by sub-functionalization
-
Lynch M, Force A (2000) The probability of duplicate gene preservation by sub-functionalization. Genetics 154(1):459-473.
-
(2000)
Genetics
, vol.154
, Issue.1
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
46
-
-
59049099861
-
Genetic redundancy: New tricks for old genes
-
Kafri R, Springer M, Pilpel Y (2009) Genetic redundancy: New tricks for old genes. Cell 136(3):389-392.
-
(2009)
Cell
, vol.136
, Issue.3
, pp. 389-392
-
-
Kafri, R.1
Springer, M.2
Pilpel, Y.3
-
47
-
-
0036141943
-
Testing the parsimony test of genome duplications: A counterexample
-
Gu X, Huang W (2002) Testing the parsimony test of genome duplications: A counterexample. Genome Res 12(1):1-2.
-
(2002)
Genome Res
, vol.12
, Issue.1
, pp. 1-2
-
-
Gu, X.1
Huang, W.2
-
48
-
-
14144255920
-
Rapid evolution of expression and regulatory divergences after yeast gene duplication
-
Gu X, Zhang Z, Huang W (2005) Rapid evolution of expression and regulatory divergences after yeast gene duplication. Proc Natl Acad Sci USA 102(3):707-712.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.3
, pp. 707-712
-
-
Gu, X.1
Zhang, Z.2
Huang, W.3
-
49
-
-
84855362209
-
2-Heptyl-4-quinolone, a precursor of the Pseudomonas quinolone signal molecule, modulates swarming motility in Pseudomonas aeruginosa
-
Ha DG, et al. (2011) 2-Heptyl-4-quinolone, a precursor of the Pseudomonas quinolone signal molecule, modulates swarming motility in Pseudomonas aeruginosa. J Bacteriol 193(23):6770-6780.
-
(2011)
J Bacteriol
, vol.193
, Issue.23
, pp. 6770-6780
-
-
Ha, D.G.1
|