-
1
-
-
0033278954
-
Pervasiveness of gene conservation and persistence of duplicates in cellular genomes
-
Tekaia F., Dujon B. Pervasiveness of gene conservation and persistence of duplicates in cellular genomes. J. Mol. Evol. 49:1999;591-600.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 591-600
-
-
Tekaia, F.1
Dujon, B.2
-
2
-
-
0030884601
-
A comparative study of duplications in bacteria and eukaryotes: The importance of telomeres
-
Coissac E., et al. A comparative study of duplications in bacteria and eukaryotes: the importance of telomeres. Mol. Biol. Evol. 14:1997;1062-1074.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1062-1074
-
-
Coissac, E.1
-
3
-
-
0042318548
-
Associations between inverted repeats and the structural evolution of bacterial genomes
-
Achaz G., et al. Associations between inverted repeats and the structural evolution of bacterial genomes. Genetics. 164:2003;1279-1289.
-
(2003)
Genetics
, vol.164
, pp. 1279-1289
-
-
Achaz, G.1
-
4
-
-
0037803483
-
An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: From duplications to genome reduction
-
Rocha E.P.C. An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction. Genome Res. 13:2003;1123-1132.
-
(2003)
Genome Res.
, vol.13
, pp. 1123-1132
-
-
Rocha, E.P.C.1
-
5
-
-
0035895278
-
Genetic architecture of thermal adaptation in Escherichia coli
-
Riehle M.M., et al. Genetic architecture of thermal adaptation in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 98:2001;525-530.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 525-530
-
-
Riehle, M.M.1
-
6
-
-
0242523875
-
Natural selection and the emergence of a mutation phenotype: An update of the evolutionary synthesis considering mechanisms that affect genome variation
-
Caporale L.H. Natural selection and the emergence of a mutation phenotype: an update of the evolutionary synthesis considering mechanisms that affect genome variation. Annu. Rev. Microbiol. 57:2003;467-485.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 467-485
-
-
Caporale, L.H.1
-
7
-
-
0031973901
-
The cspA family in Escherichia coli: Multiple gene duplication for stress adaptation
-
Yamanaka K., et al. The cspA family in Escherichia coli: multiple gene duplication for stress adaptation. Mol. Microbiol. 27:1998;247-255.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 247-255
-
-
Yamanaka, K.1
-
8
-
-
0035046878
-
Lineage-specific gene expansions in Bacterial and Archaeal genomes
-
Jordan I.K., et al. Lineage-specific gene expansions in Bacterial and Archaeal genomes. Genome Res. 11:2001;555-565.
-
(2001)
Genome Res.
, vol.11
, pp. 555-565
-
-
Jordan, I.K.1
-
9
-
-
0037572262
-
On the nature of gene innovation: Duplication patterns in microbial genomes
-
Hooper S.D., Berg O.G. On the nature of gene innovation: duplication patterns in microbial genomes. Mol. Biol. Evol. 20:2003;945-954.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 945-954
-
-
Hooper, S.D.1
Berg, O.G.2
-
10
-
-
0038486918
-
The balance of driving forces during genome evolution in prokaryotes
-
Kunin V., Ouzounis C.A. The balance of driving forces during genome evolution in prokaryotes. Genome Res. 13:2003;1589-1594.
-
(2003)
Genome Res.
, vol.13
, pp. 1589-1594
-
-
Kunin, V.1
Ouzounis, C.A.2
-
11
-
-
0036143446
-
Genomes in flux: The evolution of Archaeal and proteobacterial gene content
-
Snel B., et al. Genomes in flux: the evolution of Archaeal and proteobacterial gene content. Genome Res. 12:2002;17-25.
-
(2002)
Genome Res.
, vol.12
, pp. 17-25
-
-
Snel, B.1
-
12
-
-
33746683240
-
Evaluating genome dynamics: The constraints on rearrangements within bacterial genomes
-
REVIEWS0006
-
Hughes, D. (2000) Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes. Genome Biol 1, REVIEWS0006 ( http://genomebiology.com/2000/1/6/reviews/0006).
-
(2000)
Genome Biol
, vol.1
-
-
Hughes, D.1
-
13
-
-
0032482924
-
Molecular archaeology of the Escherichia coli genome
-
Lawrence J.G., Ochman H. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. U. S. A. 95:1998;9413-9417.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 9413-9417
-
-
Lawrence, J.G.1
Ochman, H.2
-
14
-
-
0033058895
-
Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes
-
Itoh T., et al. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol. Biol. Evol. 16:1999;332-346.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 332-346
-
-
Itoh, T.1
-
15
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov R.L., et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 4:2003;41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
16
-
-
0343384158
-
Paralogous genes encoding transport proteins in microbial genomes
-
Saier M.H., Paulsen I.T. Paralogous genes encoding transport proteins in microbial genomes. Res. Microbiol. 150:1999;689-699.
-
(1999)
Res. Microbiol.
, vol.150
, pp. 689-699
-
-
Saier, M.H.1
Paulsen, I.T.2
-
17
-
-
0032708648
-
Analysis of the proteome of Mycobacterium tuberculosis in silico
-
Tekaia F., et al. Analysis of the proteome of Mycobacterium tuberculosis in silico. Tuber. Lung Dis. 79:1999;329-342.
-
(1999)
Tuber. Lung Dis.
, vol.79
, pp. 329-342
-
-
Tekaia, F.1
-
18
-
-
0032512051
-
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
-
Andersson S.G., et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature. 396:1998;133-140.
-
(1998)
Nature
, vol.396
, pp. 133-140
-
-
Andersson, S.G.1
-
19
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
Fraser C.M., et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature. 390:1997;580-586.
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
-
20
-
-
0031753606
-
A comparative analysis of ABC transporters in complete microbial genomes
-
Tomii K., Kanehisa M. A comparative analysis of ABC transporters in complete microbial genomes. Genome Res. 8:1998;1048-1059.
-
(1998)
Genome Res.
, vol.8
, pp. 1048-1059
-
-
Tomii, K.1
Kanehisa, M.2
-
21
-
-
0030111235
-
Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli
-
Tatusov R.L., et al. Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli. Curr. Biol. 6:1996;279-291.
-
(1996)
Curr. Biol.
, vol.6
, pp. 279-291
-
-
Tatusov, R.L.1
-
22
-
-
0030249023
-
Non-orthologous gene displacement
-
Koonin E.V., et al. Non-orthologous gene displacement. Trends Genet. 12:1996;334-336.
-
(1996)
Trends Genet.
, vol.12
, pp. 334-336
-
-
Koonin, E.V.1
-
23
-
-
0036061865
-
A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
-
Daubin V., et al. A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Res. 12:2002;1080-1090.
-
(2002)
Genome Res.
, vol.12
, pp. 1080-1090
-
-
Daubin, V.1
-
24
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt E., et al. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52:2002;1043-1047.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
-
25
-
-
1342271382
-
From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-proteobacteria
-
Lerat E., et al. From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLoS Biol. 1:2003;E19.
-
(2003)
PLoS Biol
, vol.1
, pp. 19
-
-
Lerat, E.1
-
26
-
-
0037223416
-
Myriads of protein families, and still counting
-
Kunin V., et al. Myriads of protein families, and still counting. Genome Biol. 4:2003;401.
-
(2003)
Genome Biol.
, vol.4
, pp. 401
-
-
Kunin, V.1
-
27
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., et al. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
28
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li W.H., et al. Evolutionary analyses of the human genome. Nature. 409:2001;847-849.
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
-
29
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost B. Twilight zone of protein sequence alignments. Protein Eng. 12:1999;85-94.
-
(1999)
Protein Eng.
, vol.12
, pp. 85-94
-
-
Rost, B.1
-
30
-
-
0036852286
-
The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice
-
Vandepoele K., et al. The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice. Genome Res. 12:2002;1792-1801.
-
(2002)
Genome Res.
, vol.12
, pp. 1792-1801
-
-
Vandepoele, K.1
-
31
-
-
0037109058
-
The hidden duplication past of Arabidopsis thaliana
-
Simillion C., et al. The hidden duplication past of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 99:2002;13627-13632.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 13627-13632
-
-
Simillion, C.1
-
32
-
-
0141564555
-
Evidence that rice and other cereals are ancient aneuploids
-
Vandepoele K., et al. Evidence that rice and other cereals are ancient aneuploids. Plant Cell. 15:2003;2192-2202.
-
(2003)
Plant Cell
, vol.15
, pp. 2192-2202
-
-
Vandepoele, K.1
-
33
-
-
0030965346
-
Construction of evolutionary distance trees with TREECON for Windows: Accounting for variation in nucleotide substitution rate among sites
-
Van de Peer Y., De Wachter R. Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput. Appl. Biosci. 13:1997;227-230.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 227-230
-
-
Van De Peer, Y.1
De Wachter, R.2
-
34
-
-
0029789623
-
A quantitative map of nucleotide substitution rates in bacterial rRNA
-
Van de Peer Y., et al. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res. 24:1996;3381-3391.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3381-3391
-
-
Van De Peer, Y.1
|