Miniaturized and automated high-throughput verification of proteins in the ISET platform with MALDI MS

Analytical Chemistry

Volumn 84, Issue 20, 2012, Pages 8663-8669

  Adler, Belinda ^a   Boström, Tove ^b   Ekström, Simon ^a   Hober, Sophia ^b   Laurell, Thomas ^a  

^a LUND UNIVERSITY   (Sweden)

^b ALBANOVA UNIVERSITY CENTER   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS COSTS; AUTOMATED CONFIGURATION; HIGH-THROUGHPUT; IMMOBILIZED METAL ION AFFINITY CHROMATOGRAPHIES; MALDI TARGETS; MALDI-MS; MS/MS ANALYSIS; PARALLEL ANALYSIS; PEPTIDE MASS FINGERPRINTING; PROTEIN PRODUCTION; PROTEIN SEQUENCES; SAMPLE PREPARATION; SAMPLE PROCESSING; SELECTIVE ENRICHMENT; TRYPTIC DIGESTION; VERIFICATION PROTOCOL;

AFFINITY CHROMATOGRAPHY; COBALT; RECOMBINANT PROTEINS;

AUTOMATION;

PROTEIN; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ECONOMICS; ELECTRONICS; HIGH THROUGHPUT SCREENING; HUMAN; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METHODOLOGY; PEPTIDE MAPPING; TIME;

AMINO ACID SEQUENCE; HIGH-THROUGHPUT SCREENING ASSAYS; HUMANS; MINIATURIZATION; PEPTIDE MAPPING; PROTEINS; RECOMBINANT PROTEINS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS;

EID: 84869486988     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac3017983     Document Type: Article

References (35)

1. Tegel, H.; Steen, J.; Konrad, A.; Nikdin, H.; Pettersson, K.; Stenvall, M.; Tourle, S.; Wrethagen, U.; Xu, L.; Yderland, L.; Uhlen, M.; Hober, S.; Ottosson, J. Biotechnol. J. 2009, 4, 51-57.
2. Savitsky, P.; Bray, J.; Cooper, C. D.; Marsden, B. D.; Mahajan, P.; Burgess-Brown, N. A.; Gileadi, O. J. Struct. Biol. 2010, 172, 3-13.
3. Braun, P.; La Baer, J. Trends Biotechnol. 2003, 21, 383-388.
4. Uhlen, M.; Bjorling, E.; Agaton, C.; Szigyarto, C. A.; Amini, B.; Andersen, E.; Andersson, A. C.; Angelidou, P.; Asplund, A.; Asplund, C.; Berglund, L.; Bergstrom, K.; Brumer, H.; Cerjan, D.; Ekstrom, M.; Elobeid, A.; Eriksson, C.; Fagerberg, L.; Falk, R.; Fall, J.; Forsberg, M.; Bjorklund, M. G.; Gumbel, K.; Halimi, A.; Hallin, I.; Hamsten, C.; Hansson, M.; Hedhammar, M.; Hercules, G.; Kampf, C.; Larsson, K.; Lindskog, M.; Lodewyckx, W.; Lund, J.; Lundeberg, J.; Magnusson, K.; Malm, E.; Nilsson, P.; Odling, J.; Oksvold, P.; Olsson, I.; Oster, E.; Ottosson, J.; Paavilainen, L.; Persson, A.; Rimini, R.; Rockberg, J.; Runeson, M.; Sivertsson, A.; Skollermo, A.; Ateen, J.; Jtenvall, M.; Mterky, F.; Ftromberg, S.; Sundberg, M.; Megel, H.; Hourle, S.; Sahlund, E.; Ealden, A.; Aan, J.; Jernerus, H.; Hestberg, J.; Jester, K.; Krethagen, U.; Uu, L. L.; Lober, S.; Sonten, F. Mol. Cell. Proteomics 2005, 4, 1920-1932.
5. Nguyen, H.; Martinez, B.; Oganesyan, N.; Kim, R. J. Struct. Funct. Genomics 2004, 5, 23-27.
6. Schafer, F.; Romer, U.; Emmerlich, M.; Blumer, J.; Lubenow, H.; Steinert, K. J. Biomol. Tech. 2002, 13, 131-142.
7. Knaust, R. K.; Nordlund, P. Anal. Biochem. 2001, 297, 79-85.
8. Porath, J.; Carlsson, J.; Olsson, I.; Belfrage, G. Nature 1975, 258, 598-599.
9. Tegel, H.; Yderland, L.; Bostrom, T.; Eriksson, C.; Ukkonen, K.; Vasala, A.; Neubauer, P.; Ottosson, J.; Hober, S. Biotechnol. J. 2011, 6, 1018-1025.
10. Lazar, I. M.; Trisiripisal, P.; Sarvaiya, H. A. Anal. Chem. 2006, 78, 5513-5524.
11. Moon, H.; Wheeler, A. R.; Garrell, R. L.; Loo, J. A.; Kim, C. J. Lab Chip 2006, 6, 1213-1219.
12. Lee, J.; Soper, S. A.; Murray, K. K. J. Mass Spectrom. 2009, 44, 579-593.
13. Feng, X.; Du, W.; Luo, Q.; Liu, B. F. Anal. Chim. Acta 2009, 650, 83-97.
14. Laurell, T.; Marko-Varga, G. Proteomics 2002, 2, 345-351.
15. Wang, R.; Chait, B. T. Curr. Opin. Biotechnol. 1994, 5, 77-84.
16. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
17. Figeys, D.; Ning, Y.; Aebersold, R. Anal. Chem. 1997, 69, 3153-3160.
18. Sainiemi, L.; Nissila, T.; Kostiainen, R.; Ketola, R. A.; Franssila, S. Lab Chip 2011, 11, 3011-3014.
19. Gustafsson, M.; Hirschberg, D.; Palmberg, C.; Jornvall, H.; Bergman, T. Anal. Chem. 2004, 76, 345-350.
20. Tran, T. T.; Inganas, M.; Ekstrand, G.; Thorsen, G. J. Chromatogr. B 2010, 878, 2803-2810.
21. Fujita, M.; Hattori, W.; Sano, T.; Baba, M.; Someya, H.; Miyazaki, K.; Kamijo, K.; Takahashi, K.; Kawaura, H. J. Chromatogr. A 2006, 1111, 200-205.
22. Tang, N.; Tornatore, P.; Weinberger, S. R. Mass. Spectrom. Rev. 2004, 23, 34-44.
23. Ekstrom, S.; Wallman, L.; Helldin, G.; Nilsson, J.; Marko-Varga, G.; Laurell, T. J. Mass Spectrom. 2007, 42, 1445-1452.
24. Ekstrom, S.; Wallman, L.; Hok, D.; Marko-Varga, G.; Laurell, T. J Proteome Res. 2006, 5, 1071-1081.
25. Ekstrom, S.; Wallman, L.; Malm, J.; Becker, C.; Lilja, H.; Laurell, T.; Marko-Varga, G. Electrophoresis 2004, 25, 3769-3777.
26. Larsson, M.; Graslund, S.; Yuan, L.; Brundell, E.; Uhlen, M.; Hoog, C.; Stahl, S. J. Biotechnol. 2000, 80, 143-157.
27. Steen, J.; Uhlen, M.; Hober, S.; Ottosson, J. Protein Expression Purif. 2006, 46, 173-178.
28. Adler, B.; Laurell, T.; Ekstrom, S. Electrophoresis 2012, DOI: 10.1002/elps.201200134.
29. Chen, X.; Murawski, A.; Kuang, G.; Sexton, D. J.; Galbraith, W. Anal. Chem. 2006, 78, 6160-6168.
30. Ibanez, A. J.; Muck, A.; Halim, V.; Svatos, A. J Proteome Res. 2007, 6, 1183-1189.
31. Tajudin, A. A.; Ekström, S.; Jaras, K.; Marko-Varga, G.; Malm, J.; Lilja, H.; Laurell, T. 3rd EuPA Congress Clinical Proteomics, Stockholm, Sweden, June 14-17 2009; pp 174-176.
32. Calderon-Santiago, M.; Mata-Granados, J. M.; Priego-Capote, F.; Quesada-Gomez, J. M.; Luque De Castro, M. D. Anal. Biochem. 2011, 415, 39-45.
33. Cohen, S. L.; Ferredamare, A. R.; Burley, S. K.; Chait, B. T. Protein Sci. 1995, 4, 1088-1099.
34. James, P.; Quadroni, M.; Carafoli, E.; Gonnet, G. Protein Sci. 1994, 3, 1347-1350.
35. Knochenmuss, R.; Dubois, F.; Dale, M. J.; Zenobi, R. Rapid Commun. Mass Spectrom. 1996, 10, 871-877.