메뉴 건너뛰기




Volumn 7, Issue 11, 2012, Pages 1802-1806

Programming a highly structured ribozyme into complex allostery using RNA oligonucleotides

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; OLIGONUCLEOTIDE; RIBOZYME; RNA;

EID: 84869427120     PISSN: 15548929     EISSN: 15548937     Source Type: Journal    
DOI: 10.1021/cb300319m     Document Type: Article
Times cited : (9)

References (20)
  • 1
    • 80052975908 scopus 로고    scopus 로고
    • Engineering biological systems with synthetic RNA molecules
    • Liang, J. C., Bloom, R. J., and Smolke, C. D. (2011) Engineering biological systems with synthetic RNA molecules Mol. Cell 43, 915-926
    • (2011) Mol. Cell , vol.43 , pp. 915-926
    • Liang, J.C.1    Bloom, R.J.2    Smolke, C.D.3
  • 2
    • 77952330657 scopus 로고    scopus 로고
    • A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression
    • Auslander, S., Ketzer, P., and Hartig, J. S. (2010) A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression Mol. Biosyst. 6, 807-814
    • (2010) Mol. Biosyst. , vol.6 , pp. 807-814
    • Auslander, S.1    Ketzer, P.2    Hartig, J.S.3
  • 3
    • 70849109875 scopus 로고    scopus 로고
    • Modulating RNA structure and catalysis: Lessons from small cleaving ribozymes
    • Reymond, C., Beaudoin, J. D., and Perreault, J. P. (2009) Modulating RNA structure and catalysis: Lessons from small cleaving ribozymes Cell. Mol. Life Sci. 66, 3937-3950
    • (2009) Cell. Mol. Life Sci. , vol.66 , pp. 3937-3950
    • Reymond, C.1    Beaudoin, J.D.2    Perreault, J.P.3
  • 5
    • 2442641641 scopus 로고    scopus 로고
    • A conformational switch controls hepatitis delta virus ribozyme catalysis
    • Ke, A., Zhou, K., Ding, F., Cate, J. H., and Doudna, J. A. (2004) A conformational switch controls hepatitis delta virus ribozyme catalysis Nature 429, 201-205
    • (2004) Nature , vol.429 , pp. 201-205
    • Ke, A.1    Zhou, K.2    Ding, F.3    Cate, J.H.4    Doudna, J.A.5
  • 6
    • 80054929125 scopus 로고    scopus 로고
    • Characterization of the structure and dynamics of the HDV ribozyme at different stages along the reaction path
    • Lee, T. S., Giambasu, G., Harris, M. E., and York, D. M. (2011) Characterization of the structure and dynamics of the HDV ribozyme at different stages along the reaction path J. Phys. Chem. Lett. 2, 2538-2543
    • (2011) J. Phys. Chem. Lett. , vol.2 , pp. 2538-2543
    • Lee, T.S.1    Giambasu, G.2    Harris, M.E.3    York, D.M.4
  • 7
    • 78649781975 scopus 로고    scopus 로고
    • Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme
    • Reymond, C., Levesque, D., Bisaillon, M., and Perreault, J. P. (2010) Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme Structure 18, 1608-1616
    • (2010) Structure , vol.18 , pp. 1608-1616
    • Reymond, C.1    Levesque, D.2    Bisaillon, M.3    Perreault, J.P.4
  • 8
    • 0025082875 scopus 로고
    • Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions
    • Rosenstein, S. P. and Been, M. D. (1990) Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions Biochemistry 29, 8011-8016
    • (1990) Biochemistry , vol.29 , pp. 8011-8016
    • Rosenstein, S.P.1    Been, M.D.2
  • 9
    • 0025597973 scopus 로고
    • The self-cleaving domain from the genomic RNA of hepatitis delta virus: Sequence requirements and the effects of denaturant
    • Perrotta, A. T. and Been, M. D. (1990) The self-cleaving domain from the genomic RNA of hepatitis delta virus: Sequence requirements and the effects of denaturant Nucleic Acids Res. 18, 6821-6827
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6821-6827
    • Perrotta, A.T.1    Been, M.D.2
  • 10
    • 0036849338 scopus 로고    scopus 로고
    • A versatile communication module for controlling RNA folding and catalysis
    • Kertsburg, A. and Soukup, G. A. (2002) A versatile communication module for controlling RNA folding and catalysis Nucleic Acids Res. 30, 4599-4606
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4599-4606
    • Kertsburg, A.1    Soukup, G.A.2
  • 11
    • 84870798466 scopus 로고    scopus 로고
    • étude structurale du ribozyme VHD antigénomique par évolution in vitro couplée à une analyse bioinformatique. Université de Sherbrooke, Sherbrooke, Quebec, Canada
    • Nehdi, A. (2007) étude structurale du ribozyme VHD antigénomique par évolution in vitro couplée à une analyse bioinformatique. Université de Sherbrooke, Sherbrooke, Quebec, Canada.
    • (2007)
    • Nehdi, A.1
  • 12
    • 44149105178 scopus 로고    scopus 로고
    • Potassium ions modulate a G-quadruplex-ribozyme's activity
    • Beaudoin, J. D. and Perreault, J. P. (2008) Potassium ions modulate a G-quadruplex-ribozyme's activity RNA 14, 1018-1025
    • (2008) RNA , vol.14 , pp. 1018-1025
    • Beaudoin, J.D.1    Perreault, J.P.2
  • 14
    • 0034017517 scopus 로고    scopus 로고
    • Nucleotides -1 to -4 of hepatitis delta ribozyme substrate increase the specificity of ribozyme cleavage
    • Deschenes, P., Lafontaine, D. A., Charland, S., and Perreault, J. P. (2000) Nucleotides -1 to -4 of hepatitis delta ribozyme substrate increase the specificity of ribozyme cleavage Antisense Nucleic Acid Drug Dev. 10, 53-61
    • (2000) Antisense Nucleic Acid Drug Dev. , vol.10 , pp. 53-61
    • Deschenes, P.1    Lafontaine, D.A.2    Charland, S.3    Perreault, J.P.4
  • 15
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31, 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 16
    • 0042622372 scopus 로고    scopus 로고
    • RNAsoft: A suite of RNA secondary structure prediction and design software tools
    • Andronescu, M., Aguirre-Hernandez, R., Condon, A., and Hoos, H. H. (2003) RNAsoft: A suite of RNA secondary structure prediction and design software tools Nucleic Acids Res. 31, 3416-3422
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3416-3422
    • Andronescu, M.1    Aguirre-Hernandez, R.2    Condon, A.3    Hoos, H.H.4
  • 17
    • 82355171862 scopus 로고    scopus 로고
    • Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes
    • Ruminski, D. J., Webb, C. H., Riccitelli, N. J., and Luptak, A. (2011) Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes J. Biol. Chem. 286, 41286-41295
    • (2011) J. Biol. Chem. , vol.286 , pp. 41286-41295
    • Ruminski, D.J.1    Webb, C.H.2    Riccitelli, N.J.3    Luptak, A.4
  • 18
    • 0030803589 scopus 로고    scopus 로고
    • Self-cleaving ribozymes of hepatitis delta virus RNA
    • Been, M. D. and Wickham, G. S. (1997) Self-cleaving ribozymes of hepatitis delta virus RNA Eur. J. Biochem. 247, 741-753
    • (1997) Eur. J. Biochem. , vol.247 , pp. 741-753
    • Been, M.D.1    Wickham, G.S.2
  • 19
    • 14844365734 scopus 로고    scopus 로고
    • Target-dependent on/off switch increases ribozyme fidelity
    • Bergeron, L. J. and Perreault, J. P. (2005) Target-dependent on/off switch increases ribozyme fidelity Nucleic Acids Res. 33, 1240-1248
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1240-1248
    • Bergeron, L.J.1    Perreault, J.P.2
  • 20
    • 69949177617 scopus 로고    scopus 로고
    • Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing
    • Fong, N., Ohman, M., and Bentley, D. L. (2009) Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing Nat. Struct. Mol. Biol. 16, 916-922
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 916-922
    • Fong, N.1    Ohman, M.2    Bentley, D.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.