Structural basis for the influence of a single mutation K145N on the oligomerization and photoswitching rate of Dronpa

Acta Crystallographica Section D: Biological Crystallography

Volumn 68, Issue 12, 2012, Pages 1653-1659

  Nguyen Bich, Ngan ^a   Moeyaert, Benjamien ^a   Van Hecke, Kristof ^a,b   Dedecker, Peter ^a   Mizuno, Hideaki ^a   Hofkens, Johan ^a   Van Meervelt, Luc ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

Dronpa; green fluorescent proteins; photoswitching

Indexed keywords

BIOPOLYMER; GREEN FLUORESCENT PROTEIN;

AFFINITY CHROMATOGRAPHY; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; ISOLATION AND PURIFICATION; KINETICS; LIGHT; MUTATION; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

BIOPOLYMERS; CHROMATOGRAPHY, AFFINITY; CRYSTALLOGRAPHY, X-RAY; GREEN FLUORESCENT PROTEINS; KINETICS; LIGHT; MODELS, MOLECULAR; MUTATION; PROTEIN CONFORMATION;

EID: 84869420061     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444912039686     Document Type: Article

References (29)

1. Adam, V., Moeyaert, B., David, C. C., Mizuno, H., Lelimousin, M., Dedecker, P., Ando, R., Miyawaki, A., Michiels, J., Engelborghs, Y. & Hofkens, J. (2011). Chem. Biol. 18, 1241-1251.
2. Afonine, P. V., Grosse-Kunstleve, R. W. & Adams, P. D. (2005). CCP4 Newsl., 42, contribution 8.
3. Alieva, N. O., Konzen, K. A., Field, S. F., Meleshkevitch, E. A., Hunt, M. E., Beltran-Ramirez, V., Miller, D. J., Wiedenmann, J., Salih, A. & Matz, M. V. (2008). PLoS One, 3, e2680.
4. Allen, F. H. (2002). Acta Cryst. B58, 380-388.
5. Ando, R., Flors, C., Mizuno, H., Hofkens, J. & Miyawaki, A. (2007). Biophys. J. 92, 97-99.
6. Ando, R., Mizuno, H. & Miyawaki, A. (2004). Science, 306, 1370-1373.
7. Andresen, M., Stiel, A. C., Trowitzsch, S., Weber, G., Eggeling, C., Wahl, M. C., Hell, S. W. & Jakobs, S. (2007). Proc. Natl Acad. Sci. USA, 104, 13005-13009.
8. Campbell, R. E., Tour, O., Palmer, A. E., Steinbach, P. A., Baird, G. S., Zacharias, D. A. & Tsien, R. Y. (2002). Proc. Natl Acad. Sci. USA, 99, 7877-7882.
9. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
10. Chudakov, D. M., Matz, M. V., Lukyanov, S. & Lukyanov, K. A. (2010). Physiol. Rev. 90, 1103-1163.
11. Day, R. N. & Davison, M. W. (2009). Chem. Soc. Rev. 38, 2887-2921.
12. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
13. Evans, P. (2006). Acta Cryst. D62, 72-82.
14. Goedhart, J., von Stetten, D., Noirclerc-Savoye, M., Lelimousin, M., Joosen, L., Hink, M. A., von Weeren, L., Gadella, T. W. J. Jr & Royant, A. (2011). Nature Commun. 3, 751.
15. Habuchi, S., Ando, R., Dedecker, P., Verheijen, W., Mizuno, H., Miyawaki, A. & Hofkens, J. (2005). Proc. Natl Acad. Sci. USA, 102, 9511-9516.
16. Habuchi, S., Tsutsui, H., Kochaniak, A. B., Miyawaki, A. & van Oijen, A. M. (2008). PLoS One, 3, e3944.
17. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
18. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
19. Mizuno, H., Dedecker, P., Ando, R., Fukano, T., Hofkens, J. & Miyawaki, A. (2010). Photochem. Photobiol. Sci. 9, 239-248.
20. Mizuno, H., Mal, T. K., Wälchli, M., Fukano, T., Ikura, M. & Miyawaki, A. (2010). J. Biomol. NMR, 48, 237-246.
21. Mizuno, H., Mal, T. K., Wälchli, M., Kikuchi, A., Fukano, T., Ando, R., Jeyakanthan, J., Taka, J., Shiro, Y., Ikura, M. & Miyawaki, A. (2008). Proc. Natl Acad. Sci. USA, 105, 9227-9232.
22. Moriarty, N. W., Grosse-Kunstleve, R. W. & Adams, P. D. (2009). Acta Cryst. D65, 1074-1080.
23. Nienhaus, G. U. & Wiedenmann, J. (2009). ChemPhysChem, 10, 1369-1379.
24. Stiel, A. C., Trowitzsch, S., Weber, G., Andresen, M., Eggeling, C., Hell, S. W., Jakobs, S. & Wahl, M. C. (2007). Biochem. J. 402, 35-42.
25. Wall, M. A., Socolich, M. & Ranganathan, R. (2000). Nature Struct. Mol. Biol. 7, 1133-1138.
26. Ward, W. W., Cody, C. W., Hart, R. C. & Cormier, M. J. (1980). Photochem. Photobiol. 31, 611-615.
27. Wiedenmann, J., Ivanchenko, S., Oswald, F., Schmitt, F., Röcker, C., Salih, A., Spindler, K. D. & Nienhaus, G. U. (2004). Proc. Natl Acad. Sci. USA, 101, 15905-15910.
28. Wiedenmann, J., Oswald, F. & Nienhaus, G. U. (2009). IUBMB Life, 61, 1029-1042.
29. Wilmann, P. G., Turcic, K., Battad, J. M., Wilce, M. C., Devenish, R. J., Prescott, M. & Rossjohn, J. (2006). J. Mol. Biol. 364, 213-224.