메뉴 건너뛰기




Volumn 11, Issue 11, 2012, Pages 1468-1474

Topograph, a software platform for precursor enrichment corrected global protein turnover measurements

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; ISOTOPE LABELING; MEASUREMENT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN METABOLISM; PROTEIN SYNTHESIS;

EID: 84869208334     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.O112.017699     Document Type: Article
Times cited : (48)

References (24)
  • 1
    • 70449227875 scopus 로고
    • Measurement of protein turnover in rat liver
    • Swick, R. W. (1958) Measurement of protein turnover in rat liver. J. Biol.Chem. 231, 751-764
    • (1958) J. Biol.Chem. , vol.231 , pp. 751-764
    • Swick, R.W.1
  • 2
    • 0015447739 scopus 로고
    • An appraisal of techniques for the determination of protein turnover in vivo
    • Garlick, P. J., and Millward, D. J. (1972) An appraisal of techniques for the determination of protein turnover in vivo. Proc. Nutr. Soc. 31, 249-255
    • (1972) Proc. Nutr. Soc. , vol.31 , pp. 249-255
    • Garlick, P.J.1    Millward, D.J.2
  • 4
    • 0018354666 scopus 로고
    • 15N enrichment in plasma lysine: Application to measurement of whole body protein turnover
    • DOI 10.1016/0003-2697(79)90354-3
    • Bier, D. M., and Christopherson, H. L. (1979) Rapid micromethod for determination of 15N enrichment in plasma lysine: application to measurement of whole body protein turnover. Anal. Biochem. 94, 242-248 (Pubitemid 9173011)
    • (1979) Analytical Biochemistry , vol.94 , Issue.2 , pp. 242-248
    • Bier, D.M.1    Christopherson, H.L.2
  • 8
    • 84860874449 scopus 로고    scopus 로고
    • Protein turnover: Measurement of proteome dynamics by whole animal metabolic labelling with stable isotope labelled amino acids
    • Claydon, A. J., Thom, M. D., Hurst, J. L., and Beynon, R. J. (2012) Protein turnover: measurement of proteome dynamics by whole animal metabolic labelling with stable isotope labelled amino acids. Proteomics 12, 1194-1206
    • (2012) Proteomics , vol.12 , pp. 1194-1206
    • Claydon, A.J.1    Thom, M.D.2    Hurst, J.L.3    Beynon, R.J.4
  • 9
    • 83055163797 scopus 로고    scopus 로고
    • A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling
    • Guan, S., Price, J. C., Prusiner, S. B., Ghaemmaghami, S., and Burlingame, A. L. (2011) A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling. Mol. Cell. Proteomics10, M111.010728
    • (2011) Mol. Cell. Proteomics , vol.10
    • Guan, S.1    Price, J.C.2    Prusiner, S.B.3    Ghaemmaghami, S.4    Burlingame, A.L.5
  • 10
    • 81255175600 scopus 로고    scopus 로고
    • SILACtor: Software to enable dynamic SILAC studies
    • Hoopmann, M. R., Chavez, J. D., and Bruce, J. E. (2011) SILACtor: software to enable dynamic SILAC studies. Anal. Chem. 83, 8403-8410
    • (2011) Anal. Chem. , vol.83 , pp. 8403-8410
    • Hoopmann, M.R.1    Chavez, J.D.2    Bruce, J.E.3
  • 14
    • 76149132007 scopus 로고    scopus 로고
    • Comparison of database search strategies for high precursor mass accuracy MS/MS data
    • Hsieh, E. J., Hoopmann, M. R., MacLean, B., and MacCoss, M. J. (2010) Comparison of database search strategies for high precursor mass accuracy MS/MS data. J. Proteome Res. 9, 1138-1143
    • (2010) J. Proteome Res. , vol.9 , pp. 1138-1143
    • Hsieh, E.J.1    Hoopmann, M.R.2    MacLean, B.3    MacCoss, M.J.4
  • 15
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K., McCormack, A. L., and Yates, J. R. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976-989
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 16
    • 35748972060 scopus 로고    scopus 로고
    • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    • DOI 10.1038/nmeth1113, PII NMETH1113
    • Käll, L., Canterbury, J. D., Weston, J., Noble, W. S., and MacCoss, M. J. (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat. Methods 4, 923-925 (Pubitemid 350042380)
    • (2007) Nature Methods , vol.4 , Issue.11 , pp. 923-925
    • Kall, L.1    Canterbury, J.D.2    Weston, J.3    Noble, W.S.4    MacCoss, M.J.5
  • 17
    • 0025830123 scopus 로고
    • Calculation of isotope distributions in mass spectrometry. A trivial solution for a non-trivial problem
    • Kubinyi, H. (1991) Calculation of isotope distributions in mass spectrometry. A trivial solution for a non-trivial problem. Anal. Chim. Acta 247, 107-119
    • (1991) Anal. Chim. Acta , vol.247 , pp. 107-119
    • Kubinyi, H.1
  • 18
    • 0000837057 scopus 로고
    • Least Squares Analysis and Simplification of Multi-Isotope Mass Spectra
    • Brauman, J. I. (1966) Least Squares Analysis and Simplification of Multi-Isotope Mass Spectra. Anal. Chem. 38, 607-610
    • (1966) Anal. Chem. , vol.38 , pp. 607-610
    • Brauman, J.I.1
  • 19
    • 0346122950 scopus 로고    scopus 로고
    • A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data
    • DOI 10.1021/ac034790h
    • MacCoss, M. J., Wu, C. C., Liu, H., Sadygov, R., and Yates, J. R. 3rd (2003) A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 75, 6912-6921 (Pubitemid 37523592)
    • (2003) Analytical Chemistry , vol.75 , Issue.24 , pp. 6912-6921
    • MacCoss, M.J.1    Wu, C.C.2    Liu, H.3    Sadygov, R.4    Yates III, J.R.5
  • 20
    • 13844317869 scopus 로고    scopus 로고
    • Proteome dynamics in complex organisms: Using stable isotopes to monitor individual protein turnover rates
    • DOI 10.1002/pmic.200400959
    • Doherty, M. K., Whitehead, C., McCormack, H., Gaskell, S. J., and Beynon, R. J. (2005) Proteome dynamics in complex organisms: using stable isotopes to monitor individual protein turnover rates. Proteomics 5, 522-533 (Pubitemid 40262069)
    • (2005) Proteomics , vol.5 , Issue.2 , pp. 522-533
    • Doherty, M.K.1    Whitehead, C.2    McCormack, H.3    Gaskell, S.J.4    Beynon, R.J.5
  • 21
    • 0026448766 scopus 로고
    • Mass isotopomer distribution analysis: A technique for measuring biosynthesis and turnover of polymers
    • Hellerstein, M. K., and Neese, R. A. (1992) Mass isotopomer distribution analysis: a technique for measuring biosynthesis and turnover of polymers. Am. J. Physiol. 263, E988-E1001
    • (1992) Am. J. Physiol. , vol.263
    • Hellerstein, M.K.1    Neese, R.A.2
  • 22
    • 0028229955 scopus 로고
    • Measurement of tissue protein synthesis rates in vivo: A critical analysis of contrasting methods
    • Garlick, P. J., McNurlan, M. A., Essén, P., and Wernerman, J. (1994) Measurement of tissue protein synthesis rates in vivo: a critical analysis of contrasting methods. Am. J. Physiol. 266, E287-E97
    • (1994) Am. J. Physiol. , vol.266
    • Garlick, P.J.1    McNurlan, M.A.2    Essén, P.3    Wernerman, J.4
  • 23
    • 39349083915 scopus 로고    scopus 로고
    • Adapting proteostasis for disease intervention
    • DOI 10.1126/science.1141448
    • Balch, W. E., Morimoto, R. I., Dillin, A., and Kelly, J. W. (2008) Adapting proteostasis for disease intervention. Science 319, 916-919 (Pubitemid 351263754)
    • (2008) Science , vol.319 , Issue.5865 , pp. 916-919
    • Balch, W.E.1    Morimoto, R.I.2    Dillin, A.3    Kelly, J.W.4
  • 24
    • 0032990397 scopus 로고    scopus 로고
    • Isotopic fractionation of organic compounds in chromatography
    • Filer, C. N. (1999) Isotopic fractionation of organic compounds in chromatography. J. Labelled Compounds Radiopharmaceut. 42, 169-197
    • (1999) J. Labelled Compounds Radiopharmaceut. , vol.42 , pp. 169-197
    • Filer, C.N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.