메뉴 건너뛰기




Volumn 194, Issue 22, 2012, Pages 6143-6153

Directional evolution of chlamydia trachomatis towards niche-specific adaptation

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

EID: 84869132655     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01291-12     Document Type: Article
Times cited : (38)

References (88)
  • 1
    • 62849102646 scopus 로고    scopus 로고
    • Cytokinesis is blocked in mammalian cells transfected with Chlamydia trachomatis gene CT223
    • doi:10.1186/1471-2180-9-2.
    • Alzhanov DT, Weeks SK, Burnett JR, Rockey DD. 2009. Cytokinesis is blocked in mammalian cells transfected with Chlamydia trachomatis gene CT223. BMC Microbiol. 9:2. doi:10.1186/1471-2180-9-2.
    • (2009) BMC Microbiol. , vol.9 , pp. 2
    • Alzhanov, D.T.1    Weeks, S.K.2    Burnett, J.R.3    Rockey, D.D.4
  • 2
    • 0030032923 scopus 로고    scopus 로고
    • Muller's ratchet decreases fitness of a DNA-based microbe
    • Andersson DI, Hughes D. 1996. Muller's ratchet decreases fitness of a DNA-based microbe. Proc. Natl. Acad. Sci. U. S. A. 93:906-907.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 906-907
    • Andersson, D.I.1    Hughes, D.2
  • 3
    • 56149102503 scopus 로고    scopus 로고
    • Chlamydia trachomatis ompA variants in trachoma: what do they tell us?
    • doi:10.1371/ journal.pntd.0000306.
    • Andreasen AA, et al. 2008. Chlamydia trachomatis ompA variants in trachoma: what do they tell us? PLoS Negl. Trop. Dis. 2:e306. doi:10.1371/ journal.pntd.0000306.
    • (2008) PLoS Negl. Trop. Dis. , vol.2
    • Andreasen, A.A.1
  • 4
    • 35348821456 scopus 로고    scopus 로고
    • Phylogenomic analysis of natural selection pressure in Streptococcus genomes
    • doi:10.1186/1471-2148-7-154.
    • Anisimova M, Bielawski J, Dunn K, Yang Z. 2007. Phylogenomic analysis of natural selection pressure in Streptococcus genomes. BMC Evol. Biol. 7:154. doi:10.1186/1471-2148-7-154.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 154
    • Anisimova, M.1    Bielawski, J.2    Dunn, K.3    Yang, Z.4
  • 5
    • 34547793042 scopus 로고    scopus 로고
    • Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
    • Anisimova M, Yang Z. 2007. Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites. Mol. Biol. Evol. 24:1219-1228.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1219-1228
    • Anisimova, M.1    Yang, Z.2
  • 6
    • 0034001114 scopus 로고    scopus 로고
    • A secondary structure motif predictive of protein localization to the chlamydial inclusion membrane
    • Bannantine JP, Griffiths RS, Viratyosin W, Brown WJ, Rockey DD. 2000. A secondary structure motif predictive of protein localization to the chlamydial inclusion membrane. Cell Microbiol. 2:35-47.
    • (2000) Cell Microbiol. , vol.2 , pp. 35-47
    • Bannantine, J.P.1    Griffiths, R.S.2    Viratyosin, W.3    Brown, W.J.4    Rockey, D.D.5
  • 7
    • 0031863420 scopus 로고    scopus 로고
    • Tandem genes of Chlamydia psittaci that encode proteins localized to the inclusion membrane
    • Bannantine JP, Rockey DD, Hackstadt T. 1998. Tandem genes of Chlamydia psittaci that encode proteins localized to the inclusion membrane. Mol. Microbiol. 28:1017-1026.
    • (1998) Mol. Microbiol. , vol.28 , pp. 1017-1026
    • Bannantine, J.P.1    Rockey, D.D.2    Hackstadt, T.3
  • 8
    • 0037586531 scopus 로고    scopus 로고
    • Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis
    • Belland RJ, et al. 2003. Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis. Proc. Natl. Acad. Sci. U. S. A. 100:8478-8483.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 8478-8483
    • Belland, R.J.1
  • 9
    • 77955664179 scopus 로고    scopus 로고
    • Normalization strategies for real-time expression data in Chlamydia trachomatis
    • Borges V, et al. 2010. Normalization strategies for real-time expression data in Chlamydia trachomatis. J. Microbiol. Methods 82:256-264.
    • (2010) J. Microbiol. Methods , vol.82 , pp. 256-264
    • Borges, V.1
  • 10
    • 84865015973 scopus 로고    scopus 로고
    • Domain analyses reveal that Chlamydia trachomatis CT694 protein belongs to the membrane-localized family of type III effector proteins
    • Bullock HD, Hower S, Fields KA. 2012. Domain analyses reveal that Chlamydia trachomatis CT694 protein belongs to the membrane-localized family of type III effector proteins. J. Biol. Chem. 287:28078-28086.
    • (2012) J. Biol. Chem. , vol.287 , pp. 28078-28086
    • Bullock, H.D.1    Hower, S.2    Fields, K.A.3
  • 11
    • 0035349729 scopus 로고    scopus 로고
    • Predicting adaptive evolution
    • Bush RM. 2001. Predicting adaptive evolution. Nat. Rev. Genet. 2:387-392.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 387-392
    • Bush, R.M.1
  • 13
    • 0038481181 scopus 로고    scopus 로고
    • Polymorphisms in Chlamydia trachomatis tryptophan synthase genes differentiate between genital and ocular isolates
    • Caldwell HD, et al. 2003. Polymorphisms in Chlamydia trachomatis tryptophan synthase genes differentiate between genital and ocular isolates. J. Clin. Invest. 111:1757-1769.
    • (2003) J. Clin. Invest. , vol.111 , pp. 1757-1769
    • Caldwell, H.D.1
  • 14
    • 57149092385 scopus 로고    scopus 로고
    • Synonymous genes explore different evolutionary landscapes
    • doi:10.1371/journal.pgen.1000256.
    • Cambray G, Mazel D. 2008. Synonymous genes explore different evolutionary landscapes. PLoS Genet. 4:e1000256. doi:10.1371/journal.pgen.1000256.
    • (2008) PLoS Genet. , vol.4
    • Cambray, G.1    Mazel, D.2
  • 15
    • 25444493846 scopus 로고    scopus 로고
    • Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains
    • Carlson JH, Porcella SF, McClarty G, Caldwell HD. 2005. Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains. Infect. Immun. 73:6407-6418.
    • (2005) Infect. Immun. , vol.73 , pp. 6407-6418
    • Carlson, J.H.1    Porcella, S.F.2    McClarty, G.3    Caldwell, H.D.4
  • 17
    • 30744432134 scopus 로고    scopus 로고
    • Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
    • Chamary JV, Hurst LD. 2005. Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biol. 6:R75.
    • (2005) Genome Biol. , vol.6
    • Chamary, J.V.1    Hurst, L.D.2
  • 18
    • 0025244957 scopus 로고
    • Fitness of RNA virus decreased by Muller's ratchet
    • Chao L. 1990. Fitness of RNA virus decreased by Muller's ratchet. Nature 348:454-455.
    • (1990) Nature , vol.348 , pp. 454-455
    • Chao, L.1
  • 19
    • 1842509978 scopus 로고    scopus 로고
    • Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase
    • Chen L, Perlina A, Lee CJ. 2004. Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase. J. Virol. 78:3722-3732.
    • (2004) J. Virol. , vol.78 , pp. 3722-3732
    • Chen, L.1    Perlina, A.2    Lee, C.J.3
  • 20
    • 3042707297 scopus 로고    scopus 로고
    • A chlamydial type III translocated protein is tyrosine-phosphorylated at the site of entry and associated with recruitment of actin
    • Clifton DR, et al. 2004. A chlamydial type III translocated protein is tyrosine-phosphorylated at the site of entry and associated with recruitment of actin. Proc. Natl. Acad. Sci. U. S. A. 101:10166-10171.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 10166-10171
    • Clifton, D.R.1
  • 21
    • 60049100267 scopus 로고    scopus 로고
    • Identification and characterization of novel recombinant vaccine antigens for immunization against genital Chlamydia trachomatis
    • Coler RN, et al. 2009. Identification and characterization of novel recombinant vaccine antigens for immunization against genital Chlamydia trachomatis. FEMS Immunol. Med. Microbiol. 55:258-270.
    • (2009) FEMS Immunol. Med. Microbiol. , vol.55 , pp. 258-270
    • Coler, R.N.1
  • 22
    • 32444444463 scopus 로고    scopus 로고
    • Chlamydia trachomatis polymorphic membrane protein D is a species-common pan-neutralizing antigen
    • Crane DD, et al. 2006. Chlamydia trachomatis polymorphic membrane protein D is a species-common pan-neutralizing antigen. Proc. Natl. Acad. Sci. U. S. A. 103:1894-1899.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 1894-1899
    • Crane, D.D.1
  • 23
    • 77956193448 scopus 로고    scopus 로고
    • progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • doi:10.1371/journal.pone.0011147.
    • Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147. doi:10.1371/journal.pone.0011147.
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 24
    • 79951553486 scopus 로고    scopus 로고
    • Multi-genome identification and characterization of chlamydia-specific type III secretion substrates: the Inc proteins
    • doi:10.1186/1471-2164-12-109.
    • Dehoux P, Flores R, Dauga C, Zhong G, Subtil A. 2011. Multi-genome identification and characterization of chlamydia-specific type III secretion substrates: the Inc proteins. BMC Genomics 12:109. doi:10.1186/1471-2164-12-109.
    • (2011) BMC Genomics , vol.12 , pp. 109
    • Dehoux, P.1    Flores, R.2    Dauga, C.3    Zhong, G.4    Subtil, A.5
  • 25
    • 42949109747 scopus 로고    scopus 로고
    • SNARE protein mimicry by an intracellular bacterium
    • doi:10.1371/journal.ppat.1000022.
    • Delevoye C, et al. 2008. SNARE protein mimicry by an intracellular bacterium. PLoS Pathog. 4:e1000022. doi:10.1371/journal.ppat.1000022.
    • (2008) PLoS Pathog. , vol.4
    • Delevoye, C.1
  • 26
    • 48449101412 scopus 로고    scopus 로고
    • Standard and generalized Mc- Donald-Kreitman test: a website to detect selection by comparing different classes of DNA sites
    • Egea R, Casillas S, Barbadilla A. 2008. Standard and generalized Mc- Donald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. Nucleic Acids Res. 36(web server issue)W157-62157-62162.
    • (2008) Nucleic Acids Res. , vol.36 , Issue.WEB SERVER ISSUE
    • Egea, R.1    Casillas, S.2    Barbadilla, A.3
  • 27
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein J. 1974. The evolutionary advantage of recombination. Genetics 78:737-756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 28
    • 84883390431 scopus 로고    scopus 로고
    • Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis
    • Ferreira R, et al. 2012. Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis. G3 (Bethesda) 2:761-768.
    • (2012) G3 (Bethesda) , vol.2 , pp. 761-768
    • Ferreira, R.1
  • 29
    • 0038011417 scopus 로고    scopus 로고
    • Chlamydia trachomatis type III secretion: evidence for a functional apparatus during earlycycle development
    • Fields KA, Mead DJ, Dooley CA, Hackstadt T. 2003. Chlamydia trachomatis type III secretion: evidence for a functional apparatus during earlycycle development. Mol. Microbiol. 48:671-683.
    • (2003) Mol. Microbiol. , vol.48 , pp. 671-683
    • Fields, K.A.1    Mead, D.J.2    Dooley, C.A.3    Hackstadt, T.4
  • 30
    • 79959969499 scopus 로고    scopus 로고
    • Approach to discover T- and B-cell antigens of intracellular pathogens applied to the design of Chlamydia trachomatis vaccines
    • Finco O, et al. 2011. Approach to discover T- and B-cell antigens of intracellular pathogens applied to the design of Chlamydia trachomatis vaccines. Proc. Natl. Acad. Sci. U. S. A. 108:9969-9974.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 9969-9974
    • Finco, O.1
  • 31
    • 0035970049 scopus 로고    scopus 로고
    • + T cells recognize an inclusion membraneassociated protein from the vacuolar pathogen Chlamydia trachomatis
    • + T cells recognize an inclusion membraneassociated protein from the vacuolar pathogen Chlamydia trachomatis. Proc. Natl. Acad. Sci. U. S. A. 98:1160-1165.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 1160-1165
    • Fling, S.P.1
  • 33
    • 0037189323 scopus 로고    scopus 로고
    • Diversity considerations in HIV-1 vaccine selection
    • Gaschen B, et al. 2002. Diversity considerations in HIV-1 vaccine selection. Science 296:2354-2360.
    • (2002) Science , vol.296 , pp. 2354-2360
    • Gaschen, B.1
  • 34
    • 31344431835 scopus 로고    scopus 로고
    • Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis
    • Gomes JP, et al. 2006. Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis. Microbes Infect. 8:16-26.
    • (2006) Microbes Infect. , vol.8 , pp. 16-26
    • Gomes, J.P.1
  • 35
    • 18044381715 scopus 로고    scopus 로고
    • Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups
    • Gomes JP, Hsia RC, Mead S, Borrego MJ, Dean D. 2005. Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups. Microbes Infect. 7:410-420.
    • (2005) Microbes Infect. , vol.7 , pp. 410-420
    • Gomes, J.P.1    Hsia, R.C.2    Mead, S.3    Borrego, M.J.4    Dean, D.5
  • 36
    • 33644880273 scopus 로고    scopus 로고
    • Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism
    • Gomes JP, et al. 2006. Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism. J. Bacteriol. 188:275-286.
    • (2006) J. Bacteriol. , vol.188 , pp. 275-286
    • Gomes, J.P.1
  • 37
    • 79953728755 scopus 로고    scopus 로고
    • Chlamydia trachomatis secretion of hypothetical protein CT622 into host cell cytoplasm via a secretion pathway that can be inhibited by the type III secretion system inhibitor compound 1
    • Gong S, Lei L, Chang X, Belland R, Zhong G. 2011. Chlamydia trachomatis secretion of hypothetical protein CT622 into host cell cytoplasm via a secretion pathway that can be inhibited by the type III secretion system inhibitor compound 1. Microbiology 157:1134-1144.
    • (2011) Microbiology , vol.157 , pp. 1134-1144
    • Gong, S.1    Lei, L.2    Chang, X.3    Belland, R.4    Zhong, G.5
  • 38
    • 0032707996 scopus 로고    scopus 로고
    • Computational analysis of the polymorphic membrane protein superfamily of Chlamydia trachomatis and Chlamydia pneumoniae
    • Grimwood J, Stephens RS. 1999. Computational analysis of the polymorphic membrane protein superfamily of Chlamydia trachomatis and Chlamydia pneumoniae. Microb. Comp. Genomics 4:187-201.
    • (1999) Microb. Comp. Genomics , vol.4 , pp. 187-201
    • Grimwood, J.1    Stephens, R.S.2
  • 39
    • 84859326308 scopus 로고    scopus 로고
    • Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
    • Harris SR, et al. 2012. Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nat. Genet. 44:413-419.
    • (2012) Nat. Genet. , vol.44 , pp. 413-419
    • Harris, S.R.1
  • 40
    • 66949161477 scopus 로고    scopus 로고
    • Evidence that CT694 is a novel Chlamydia trachomatis T3S substrate capable of functioning during invasion or early cycle development
    • Hower S, Wolf K, Fields KA. 2009. Evidence that CT694 is a novel Chlamydia trachomatis T3S substrate capable of functioning during invasion or early cycle development. Mol. Microbiol. 72:1423-1437.
    • (2009) Mol. Microbiol. , vol.72 , pp. 1423-1437
    • Hower, S.1    Wolf, K.2    Fields, K.A.3
  • 41
    • 77952738479 scopus 로고    scopus 로고
    • Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination
    • Jeffrey BM, et al. 2010. Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination. Infect. Immun. 78:2544-2553.
    • (2010) Infect. Immun. , vol.78 , pp. 2544-2553
    • Jeffrey, B.M.1
  • 44
    • 77957686132 scopus 로고    scopus 로고
    • The conserved Tarp actin binding domain is important for chlamydial invasion
    • doi:10.1371/journal.ppat.1000997.
    • Jewett TJ, Miller NJ, Dooley CA, Hackstadt T. 2010. The conserved Tarp actin binding domain is important for chlamydial invasion. PLoS Pathog. 6:e1000997. doi:10.1371/journal.ppat.1000997.
    • (2010) PLoS Pathog. , vol.6
    • Jewett, T.J.1    Miller, N.J.2    Dooley, C.A.3    Hackstadt, T.4
  • 45
    • 53549103355 scopus 로고    scopus 로고
    • Localization of the hypothetical protein CT249 in the Chlamydia trachomatis inclusion membrane
    • In Chinese
    • Jia TJ, Liu DW, Luo JH, Zhong GM. 2007. Localization of the hypothetical protein CT249 in the Chlamydia trachomatis inclusion membrane. Wei Sheng Wu Xue Bao 47:645-648. (In Chinese.)
    • (2007) Wei Sheng Wu Xue Bao , vol.47 , pp. 645-648
    • Jia, T.J.1    Liu, D.W.2    Luo, J.H.3    Zhong, G.M.4
  • 46
    • 0035748444 scopus 로고    scopus 로고
    • Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal, and eukaryotic proteins
    • Jordan IK, et al. 2001. Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal, and eukaryotic proteins. Genome Biol. 2:research0053.
    • (2001) Genome Biol. , vol.2
    • Jordan, I.K.1
  • 47
    • 0036078078 scopus 로고    scopus 로고
    • Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
    • Jordan IK, Rogozin IB, Wolf YI, Koonin EV. 2002. Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res. 12:962-968.
    • (2002) Genome Res. , vol.12 , pp. 962-968
    • Jordan, I.K.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 48
    • 51949112944 scopus 로고    scopus 로고
    • Pmp-like proteins Pls1 and Pls2 are secreted into the lumen of the Chlamydia trachomatis inclusion
    • Jorgensen I, Valdivia RH. 2008. Pmp-like proteins Pls1 and Pls2 are secreted into the lumen of the Chlamydia trachomatis inclusion. Infect. Immun. 76:3940-3950.
    • (2008) Infect. Immun. , vol.76 , pp. 3940-3950
    • Jorgensen, I.1    Valdivia, R.H.2
  • 49
    • 79957467989 scopus 로고    scopus 로고
    • Interplay of recombination and selection in the genomes of Chlamydia trachomatis
    • Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD. 2011. Interplay of recombination and selection in the genomes of Chlamydia trachomatis. Biol. Direct 6:28.
    • (2011) Biol. Direct , vol.6 , pp. 28
    • Joseph, S.J.1    Didelot, X.2    Gandhi, K.3    Dean, D.4    Read, T.D.5
  • 50
    • 0032882170 scopus 로고    scopus 로고
    • Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
    • Kanaya S, Yamada Y, Kudo Y, Ikemura T. 1999. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238:143-155.
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4
  • 51
    • 39349090644 scopus 로고    scopus 로고
    • Pathogenic diversity among Chlamydia trachomatis ocular strains in nonhuman primates is affected by subtle genomic variations
    • Kari L, et al. 2008. Pathogenic diversity among Chlamydia trachomatis ocular strains in nonhuman primates is affected by subtle genomic variations. J. Infect. Dis. 197:449-456.
    • (2008) J. Infect. Dis. , vol.197 , pp. 449-456
    • Kari, L.1
  • 52
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 53
    • 0004046696 scopus 로고
    • The neutral theory of molecular evolution
    • Cambridge University Press, London, England
    • Kimura M. 1983. The neutral theory of molecular evolution. Cambridge University Press, London, England.
    • (1983)
    • Kimura, M.1
  • 54
    • 48749090431 scopus 로고    scopus 로고
    • ChlaDub1 of Chlamydia trachomatis suppresses NF-κB activation and inhibits IκBα ubiquitination and degradation
    • Le Negrate G, et al. 2008. ChlaDub1 of Chlamydia trachomatis suppresses NF-κB activation and inhibits IκBα ubiquitination and degradation. Cell Microbiol. 10:1879-1892.
    • (2008) Cell Microbiol. , vol.10 , pp. 1879-1892
    • Le Negrate, G.1
  • 55
    • 0026428610 scopus 로고
    • Adaptive evolution at the adh locus in Drosophila
    • McDonald JH, Kreitman M. 1991. Adaptive evolution at the adh locus in Drosophila. Nature 351:652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 56
    • 77954746346 scopus 로고    scopus 로고
    • Tarp regulates early Chlamydia-induced host cell survival through interactions with the human adaptor protein SHC1
    • Mehlitz A, et al. 2010. Tarp regulates early Chlamydia-induced host cell survival through interactions with the human adaptor protein SHC1. J. Cell Biol. 190:143-157.
    • (2010) J. Cell Biol. , vol.190 , pp. 143-157
    • Mehlitz, A.1
  • 57
    • 33745186215 scopus 로고    scopus 로고
    • Chlamydia trachomatis-derived deubiquitinating enzymes in mammalian cells during infection
    • Misaghi S, et al. 2006. Chlamydia trachomatis-derived deubiquitinating enzymes in mammalian cells during infection. Mol. Microbiol. 61:142-150.
    • (2006) Mol. Microbiol. , vol.61 , pp. 142-150
    • Misaghi, S.1
  • 58
    • 77957127488 scopus 로고    scopus 로고
    • Specific chlamydial inclusion membrane proteins associate with active Src family kinases in microdomains that interact with the host microtubule network
    • Mital J, Miller NJ, Fischer ER, Hackstadt T. 2010. Specific chlamydial inclusion membrane proteins associate with active Src family kinases in microdomains that interact with the host microtubule network. Cell Microbiol. 12:1235-1249.
    • (2010) Cell Microbiol. , vol.12 , pp. 1235-1249
    • Mital, J.1    Miller, N.J.2    Fischer, E.R.3    Hackstadt, T.4
  • 59
    • 35349001696 scopus 로고    scopus 로고
    • Which evolutionary processes influence natural genetic variation for phenotypic traits?
    • Mitchell-Olds T, Willis JH, Goldstein DB. 2007. Which evolutionary processes influence natural genetic variation for phenotypic traits? Nat. Rev. Gen. 8:845-856.
    • (2007) Nat. Rev. Gen. , vol.8 , pp. 845-856
    • Mitchell-Olds, T.1    Willis, J.H.2    Goldstein, D.B.3
  • 60
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance
    • Muller HJ. 1964. The relation of recombination to mutational advance. Mutat. Res. 106:2-9.
    • (1964) Mutat. Res. , vol.106 , pp. 2-9
    • Muller, H.J.1
  • 61
    • 0004036449 scopus 로고    scopus 로고
    • Molecular evolution and phylogenetics
    • Oxford University Press, New York, NY
    • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. Oxford University Press, New York, NY.
    • (2000)
    • Nei, M.1    Kumar, S.2
  • 62
    • 0034809334 scopus 로고    scopus 로고
    • Statistical tests of selective neutrality in the age of genomics
    • Nielsen R. 2001. Statistical tests of selective neutrality in the age of genomics. Heredity 86:641-647.
    • (2001) Heredity , vol.86 , pp. 641-647
    • Nielsen, R.1
  • 63
    • 41149101849 scopus 로고    scopus 로고
    • Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains
    • doi:10.1371/journal.pone.0000878.
    • Nunes A, et al. 2007. Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains. PLoS One 2:e878. doi:10.1371/journal.pone.0000878.
    • (2007) PLoS One , vol.2
    • Nunes, A.1
  • 64
    • 78049304748 scopus 로고    scopus 로고
    • Adaptive evolution of the Chlamydia trachomatis dominant antigen reveals distinct evolutionary scenarios for B- and T-cell epitopes: worldwide survey
    • doi:10.1371/journal.pone.0013171.
    • Nunes A, Nogueira PJ, Borrego MJ, Gomes JP. 2010. Adaptive evolution of the Chlamydia trachomatis dominant antigen reveals distinct evolutionary scenarios for B- and T-cell epitopes: worldwide survey. PLoS One 5:e13171. doi:10.1371/journal.pone.0013171.
    • (2010) PLoS One , vol.5
    • Nunes, A.1    Nogueira, P.J.2    Borrego, M.J.3    Gomes, J.P.4
  • 65
    • 0034654345 scopus 로고    scopus 로고
    • Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
    • Read TD, et al. 2000. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 28:1397-1406.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1397-1406
    • Read, T.D.1
  • 67
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 68
    • 0032775116 scopus 로고    scopus 로고
    • Identification and characterization of a Chlamydia trachomatis early operon encoding four novel inclusion membrane proteins
    • Scidmore-Carlson MA, Shaw EI, Dooley CA, Fischer ER, Hackstadt T. 1999. Identification and characterization of a Chlamydia trachomatis early operon encoding four novel inclusion membrane proteins. Mol. Microbiol. 33:753-765.
    • (1999) Mol. Microbiol. , vol.33 , pp. 753-765
    • Scidmore-Carlson, M.A.1    Shaw, E.I.2    Dooley, C.A.3    Fischer, E.R.4    Hackstadt, T.5
  • 69
    • 33644764765 scopus 로고    scopus 로고
    • Profiling of human antibody responses to Chlamydia trachomatis urogenital tract infection using microplates arrayed with 156 chlamydial fusion proteins
    • Sharma J, et al. 2006. Profiling of human antibody responses to Chlamydia trachomatis urogenital tract infection using microplates arrayed with 156 chlamydial fusion proteins. Infect. Immun. 74:1490-1499.
    • (2006) Infect. Immun. , vol.74 , pp. 1490-1499
    • Sharma, J.1
  • 70
    • 0023046874 scopus 로고
    • Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes
    • Sharp PM, Tuohy TM, Mosurski KR. 1986. Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14:5125-5143.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.2    Mosurski, K.R.3
  • 71
    • 33644838378 scopus 로고    scopus 로고
    • Multifunctional analysis of Chlamydia-specific genes in a yeast expression system
    • Sisko JL, Spaeth K, Kumar Y, Valdivia RH. 2006. Multifunctional analysis of Chlamydia-specific genes in a yeast expression system. Mol. Microbiol. 60:51-66.
    • (2006) Mol. Microbiol. , vol.60 , pp. 51-66
    • Sisko, J.L.1    Spaeth, K.2    Kumar, Y.3    Valdivia, R.H.4
  • 72
    • 0142210412 scopus 로고    scopus 로고
    • An inclusion membrane protein from Chlamydia trachomatis enters theMHCclass I pathway and stimulates a CD8+ T cell response
    • Starnbach MN, et al. 2003. An inclusion membrane protein from Chlamydia trachomatis enters theMHCclass I pathway and stimulates a CD8+ T cell response. J. Immunol. 171:4742-4749.
    • (2003) J. Immunol. , vol.171 , pp. 4742-4749
    • Starnbach, M.N.1
  • 74
    • 0032561496 scopus 로고    scopus 로고
    • Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis
    • Stephens RS, et al. 1998. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science 282:754-759.
    • (1998) Science , vol.282 , pp. 754-759
    • Stephens, R.S.1
  • 75
    • 20344365324 scopus 로고    scopus 로고
    • A directed screen for chlamydial proteins secreted by a type III mechanism identifies a translocated protein and numerous other new candidates
    • Subtil A, et al. 2005. A directed screen for chlamydial proteins secreted by a type III mechanism identifies a translocated protein and numerous other new candidates. Mol. Microbiol. 56:1636-1647.
    • (2005) Mol. Microbiol. , vol.56 , pp. 1636-1647
    • Subtil, A.1
  • 76
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximumparsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximumparsimony methods. Mol. Biol. Evol. 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 77
    • 77649212621 scopus 로고    scopus 로고
    • Variable expression of surface-exposed polymorphic membrane proteins in in vitro-grown Chlamydia trachomatis
    • Tan C, et al. 2010. Variable expression of surface-exposed polymorphic membrane proteins in in vitro-grown Chlamydia trachomatis. Cell Microbiol. 12:174-187.
    • (2010) Cell Microbiol. , vol.12 , pp. 174-187
    • Tan, C.1
  • 78
    • 67651233699 scopus 로고    scopus 로고
    • Chlamydia trachomatis-infected patients display variable antibody profiles against the nine-member polymorphic membrane protein family
    • Tan C, et al. 2009. Chlamydia trachomatis-infected patients display variable antibody profiles against the nine-member polymorphic membrane protein family. Infect. Immun. 77:3218-3226.
    • (2009) Infect. Immun. , vol.77 , pp. 3218-3226
    • Tan, C.1
  • 79
    • 38049046557 scopus 로고    scopus 로고
    • Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates
    • Thomson NR, et al. 2008. Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates. Genome Res. 18:161-171.
    • (2008) Genome Res. , vol.18 , pp. 161-171
    • Thomson, N.R.1
  • 80
    • 66249147580 scopus 로고    scopus 로고
    • Why do bacteria engage in homologous recombination?
    • Vos M. 2009. Why do bacteria engage in homologous recombination? Trends Microbiol. 17:226-232.
    • (2009) Trends Microbiol. , vol.17 , pp. 226-232
    • Vos, M.1
  • 81
    • 65049091364 scopus 로고    scopus 로고
    • A chlamydial type III-secreted effector protein (Tarp) is predominantly recognized by antibodies from humans infected with Chlamydia trachomatis and induces protective immunity against upper genital tract pathologies in mice
    • Wang J, et al. 2009. A chlamydial type III-secreted effector protein (Tarp) is predominantly recognized by antibodies from humans infected with Chlamydia trachomatis and induces protective immunity against upper genital tract pathologies in mice. Vaccine 27:2967-2980.
    • (2009) Vaccine , vol.27 , pp. 2967-2980
    • Wang, J.1
  • 82
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15:568-573.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
    • Yang, Z.1
  • 83
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 84
    • 79952136825 scopus 로고    scopus 로고
    • Statistical properties of the branch-site test of positive selection
    • Yang Z, dos Reis M. 2011. Statistical properties of the branch-site test of positive selection. Mol. Biol. Evol. 28:1217-1228.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 1217-1228
    • Yang, Z.1    dos Reis, M.2
  • 85
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang Z, Nielsen R. 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19:908-917.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 86
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang Z, Nielsen R. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17:32-43.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 87
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22:1107-1118.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 88
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol. Biol. Evol. 22:2472-2479.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.