메뉴 건너뛰기




Volumn 29, Issue 12, 2012, Pages 3617-3623

Purifying selection modulates the estimates of population differentiation and confounds genome-wide comparisons across single-nucleotide polymorphisms

Author keywords

evolutionary rate; FST; minor allele frequency; population differentiation; purifying selection

Indexed keywords

COMPUTER SIMULATION; CONFERENCE PAPER; GENE FREQUENCY; GENE LOCUS; GENETIC ANALYSIS; HETEROZYGOSITY; MITOCHONDRIAL GENOME; MOLECULAR EVOLUTION; POPULATION DIFFERENTIATION; PURIFYING SELECTION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84869051880     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mss187     Document Type: Conference Paper
Times cited : (24)

References (37)
  • 1
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. 2002. Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12:1805-1814.
    • (2002) Genome Res. , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 3
    • 70949094320 scopus 로고    scopus 로고
    • Genome-wide scan for signatures of human population differentiation and their relationship with natural selection, functional pathways and diseases
    • Amato R, Pinelli M, Monticelli A, Marino D, Miele G, Cocozza S. 2009. Genome-wide scan for signatures of human population differentiation and their relationship with natural selection, functional pathways and diseases. PLoS One 4:e7927.
    • (2009) PLoS One , vol.4
    • Amato, R.1    Pinelli, M.2    Monticelli, A.3    Marino, D.4    Miele, G.5    Cocozza, S.6
  • 5
    • 39749136156 scopus 로고    scopus 로고
    • Natural selection has driven population differentiation in modern humans
    • Barreiro LB, Laval G, Quach H, Patin E, Quintana-Murci L. 2008. Natural selection has driven population differentiation in modern humans. Nat Genet. 40:340-345.
    • (2008) Nat Genet. , vol.40 , pp. 340-345
    • Barreiro, L.B.1    Laval, G.2    Quach, H.3    Patin, E.4    Quintana-Murci, L.5
  • 6
    • 0031901554 scopus 로고    scopus 로고
    • Measures of divergence between populations and the effect of forces that reduce variability
    • Charlesworth B. 1998. Measures of divergence between populations and the effect of forces that reduce variability. Mol Biol Evol. 15: 538-543.
    • (1998) Mol Biol Evol. , vol.15 , pp. 538-543
    • Charlesworth, B.1
  • 7
    • 61449107734 scopus 로고    scopus 로고
    • SNPnexus: A web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms
    • Chelala C, Khan A, Lemoine NR. 2009. SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms. Bioinformatics 25:655-661.
    • (2009) Bioinformatics , vol.25 , pp. 655-661
    • Chelala, C.1    Khan, A.2    Lemoine, N.R.3
  • 9
    • 0032965634 scopus 로고    scopus 로고
    • Highly variable loci and their interpretation in evolution and conservation
    • Hedrick PW. 1999. Highly variable loci and their interpretation in evolution and conservation. Evolution 53:313-318.
    • (1999) Evolution , vol.53 , pp. 313-318
    • Hedrick, P.W.1
  • 10
    • 24644446846 scopus 로고    scopus 로고
    • A standardized genetic differentiation measure
    • Hedrick PW. 2005. A standardized genetic differentiation measure. Evolution 59:1633-1638.
    • (2005) Evolution , vol.59 , pp. 1633-1638
    • Hedrick, P.W.1
  • 12
    • 33748171462 scopus 로고    scopus 로고
    • A scan for signatures of positive selection in candidate loci for skin pigmentation in humans
    • Izagirre N, Garc?a I, Junquera C, De La Rua C, Alonso S. 2006. A scan for signatures of positive selection in candidate loci for skin pigmentation in humans. Mol Biol Evol. 23:1697-1706.
    • (2006) Mol Biol Evol. , vol.23 , pp. 1697-1706
    • Izagirre, N.1    Garca, I.2    Junquera, C.3    De La Rua, C.4    Alonso, S.5
  • 13
    • 38449096471 scopus 로고    scopus 로고
    • Partitioning diversity into independent alpha and beta components
    • Jost L. 2007. Partitioning diversity into independent alpha and beta components. Ecology 88:2427-2439.
    • (2007) Ecology , vol.88 , pp. 2427-2439
    • Jost, L.1
  • 14
    • 51649095312 scopus 로고    scopus 로고
    • GST and its relatives do not measure differentiation
    • Jost L. 2008. GST and its relatives do not measure differentiation. Mol Ecol. 17:4015-4026.
    • (2008) Mol Ecol. , vol.17 , pp. 4015-4026
    • Jost, L.1
  • 15
    • 69749093207 scopus 로고    scopus 로고
    • Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations
    • Kumar S, Suleski MP, Markov GJ, Lawrence S, Marco A, Filipski AJ. 2009. Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. Genome Res. 19: 1562-1569.
    • (2009) Genome Res. , vol.19 , pp. 1562-1569
    • Kumar, S.1    Suleski, M.P.2    Markov, G.J.3    Lawrence, S.4    Marco, A.5    Filipski, A.J.6
  • 16
    • 79960083275 scopus 로고    scopus 로고
    • Faster than neutral evolution of constrained sequences: The complex interplay of mutational biases and weak selection
    • Lawrie DS, Petrov DA,Messer PW. 2011. Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection. Genome Biol Evol. 3:383.
    • (2011) Genome Biol Evol. , vol.3 , pp. 383
    • Lawrie, D.S.1    Petrov, D.A.2    Messer, P.W.3
  • 17
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin R, Krakauer J. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74: 175-195.
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.1    Krakauer, J.2
  • 20
    • 29244465071 scopus 로고    scopus 로고
    • Variants associated with common disease are not unusually differentiated in frequency across populations
    • Lohmueller KE, Mauney MM, Reich D, Braverman JM. 2006. Variants associated with common disease are not unusually differentiated in frequency across populations. Am J Hum Genet. 78:130-136.
    • (2006) Am J Hum Genet. , vol.78 , pp. 130-136
    • Lohmueller, K.E.1    Mauney, M.M.2    Reich, D.3    Braverman, J.M.4
  • 21
    • 77952899741 scopus 로고    scopus 로고
    • Human genetic diversity and the nonexistence of biological races
    • Long JC, Kittles RA. 2009. Human genetic diversity and the nonexistence of biological races. Hum Biol. 81:777-798.
    • (2009) Hum Biol. , vol.81 , pp. 777-798
    • Long, J.C.1    Kittles, R.A.2
  • 22
    • 78650079113 scopus 로고    scopus 로고
    • Assessing population structure: FST and related measures
    • Meirmans PG, Hedrick PW. 2011. Assessing population structure: FST and related measures. Mol Ecol Resour. 11:5-18.
    • (2011) Mol Ecol Resour. , vol.11 , pp. 5-18
    • Meirmans, P.G.1    Hedrick, P.W.2
  • 24
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A. 70:3321.
    • (1973) Proc Natl Acad Sci U S A. , vol.70 , pp. 3321
    • Nei, M.1
  • 25
    • 0017666723 scopus 로고
    • F-statistics and analysis of gene diversity in subdivided populations
    • Nei M. 1977. F-statistics and analysis of gene diversity in subdivided populations. Ann Hum Genet. 41:225-233.
    • (1977) Ann Hum Genet. , vol.41 , pp. 225-233
    • Nei, M.1
  • 26
    • 0020954623 scopus 로고
    • Estimation of fixation indices and gene diversities
    • Nei M, Chesser R. 1983. Estimation of fixation indices and gene diversities. Ann Hum Genet. 47:253-259.
    • (1983) Ann Hum Genet. , vol.47 , pp. 253-259
    • Nei, M.1    Chesser, R.2
  • 29
    • 33644747350 scopus 로고    scopus 로고
    • Levels of interpopulation differentiation among different functional classes of immunologically important genes
    • Ryan A, Mapp J, Moyna S, Mattiangeli V, Kelleher D, Bradley D, McManus R. 2006. Levels of interpopulation differentiation among different functional classes of immunologically important genes. Genes Immun. 7:179-183.
    • (2006) Genes Immun. , vol.7 , pp. 179-183
    • Ryan, A.1    Mapp, J.2    Moyna, S.3    Mattiangeli, V.4    Kelleher, D.5    Bradley, D.6    McManus, R.7
  • 30
    • 0031792256 scopus 로고    scopus 로고
    • Genetic evidence for a higher female migration rate in humans
    • Seielstad MT, Minch E, Cavalli-Sforza LL. 1998. Genetic evidence for a higher female migration rate in humans. Nat Genet. 20:278-280.
    • (1998) Nat Genet. , vol.20 , pp. 278-280
    • Seielstad, M.T.1    Minch, E.2    Cavalli-Sforza, L.L.3
  • 31
    • 33845894704 scopus 로고    scopus 로고
    • Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome
    • Subramanian S, Kumar S. 2006. Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome. BMC Genomics. 7:306.
    • (2006) BMC Genomics. , vol.7 , pp. 306
    • Subramanian, S.1    Kumar, S.2
  • 32
    • 12344264455 scopus 로고    scopus 로고
    • Implications of biogeography of human populations for 'race' and medicine
    • Tishkoff SA, Kidd KK. 2004. Implications of biogeography of human populations for 'race' and medicine. Nat Genet. 36:S21-S27.
    • (2004) Nat Genet. , vol.36
    • Tishkoff, S.A.1    Kidd, K.K.2
  • 33
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir B, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.1    Cockerham, C.C.2
  • 34
    • 79952449963 scopus 로고    scopus 로고
    • GST0 and D do not replace FST
    • Whitlock MC. 2011. GST0 and D do not replace FST. Mol Ecol. 20:1083-1091.
    • (2011) Mol Ecol. , vol.20 , pp. 1083-1091
    • Whitlock, M.C.1
  • 35
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright S. 1943. Isolation by distance. Genetics 28:114-138.
    • (1943) Genetics , vol.28 , pp. 114-138
    • Wright, S.1
  • 36
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright S. 1949. The genetical structure of populations. Ann Hum Genet. 15:323-354.
    • (1949) Ann Hum Genet. , vol.15 , pp. 323-354
    • Wright, S.1
  • 37
    • 78651374755 scopus 로고    scopus 로고
    • Different level of population differentiation among human genes
    • Wu DD, Zhang YP. 2011. Different level of population differentiation among human genes. BMC Evol Biol. 11:16002E
    • (2011) BMC Evol Biol. , vol.11
    • Wu, D.D.1    Zhang, Y.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.