-
1
-
-
0036911353
-
Interrogating a high-density SNP map for signatures of natural selection
-
Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. 2002. Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12:1805-1814.
-
(2002)
Genome Res.
, vol.12
, pp. 1805-1814
-
-
Akey, J.M.1
Zhang, G.2
Zhang, K.3
Jin, L.4
Shriver, M.D.5
-
2
-
-
79959524146
-
A haplotype map of the human genome
-
Altshuler D, Brooks LD, Chakravarti A, Collins FS, Daly MJ, Donnelly P, Gibbs R, Belmont J, Boudreau A, Leal S. 2005. A haplotype map of the human genome. Nature 437:1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
Altshuler, D.1
Brooks, L.D.2
Chakravarti, A.3
Collins, F.S.4
Daly, M.J.5
Donnelly, P.6
Gibbs, R.7
Belmont, J.8
Boudreau, A.9
Leal, S.10
-
3
-
-
70949094320
-
Genome-wide scan for signatures of human population differentiation and their relationship with natural selection, functional pathways and diseases
-
Amato R, Pinelli M, Monticelli A, Marino D, Miele G, Cocozza S. 2009. Genome-wide scan for signatures of human population differentiation and their relationship with natural selection, functional pathways and diseases. PLoS One 4:e7927.
-
(2009)
PLoS One
, vol.4
-
-
Amato, R.1
Pinelli, M.2
Monticelli, A.3
Marino, D.4
Miele, G.5
Cocozza, S.6
-
4
-
-
27844584255
-
Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites
-
Anderson TJC, Nair S, Sudimack D, Williams JT, Mayxay M, Newton PN, Guthmann JP, Smithuis FM, Hien TT, van den Broek IVF. 2005. Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites. Mol Biol Evol. 22:2362-2374.
-
(2005)
Mol Biol Evol.
, vol.22
, pp. 2362-2374
-
-
Anderson, T.J.C.1
Nair, S.2
Sudimack, D.3
Williams, J.T.4
Mayxay, M.5
Newton, P.N.6
Guthmann, J.P.7
Smithuis, F.M.8
Hien, T.T.9
Van Den Broek, I.V.F.10
-
5
-
-
39749136156
-
Natural selection has driven population differentiation in modern humans
-
Barreiro LB, Laval G, Quach H, Patin E, Quintana-Murci L. 2008. Natural selection has driven population differentiation in modern humans. Nat Genet. 40:340-345.
-
(2008)
Nat Genet.
, vol.40
, pp. 340-345
-
-
Barreiro, L.B.1
Laval, G.2
Quach, H.3
Patin, E.4
Quintana-Murci, L.5
-
6
-
-
0031901554
-
Measures of divergence between populations and the effect of forces that reduce variability
-
Charlesworth B. 1998. Measures of divergence between populations and the effect of forces that reduce variability. Mol Biol Evol. 15: 538-543.
-
(1998)
Mol Biol Evol.
, vol.15
, pp. 538-543
-
-
Charlesworth, B.1
-
7
-
-
61449107734
-
SNPnexus: A web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms
-
Chelala C, Khan A, Lemoine NR. 2009. SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms. Bioinformatics 25:655-661.
-
(2009)
Bioinformatics
, vol.25
, pp. 655-661
-
-
Chelala, C.1
Khan, A.2
Lemoine, N.R.3
-
8
-
-
27544474337
-
Ascertainment bias in studies of human genome-wide polymorphism
-
Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. 2005. Ascertainment bias in studies of human genome-wide polymorphism. Genome Res. 15:1496-1502.
-
(2005)
Genome Res.
, vol.15
, pp. 1496-1502
-
-
Clark, A.G.1
Hubisz, M.J.2
Bustamante, C.D.3
Williamson, S.H.4
Nielsen, R.5
-
9
-
-
0032965634
-
Highly variable loci and their interpretation in evolution and conservation
-
Hedrick PW. 1999. Highly variable loci and their interpretation in evolution and conservation. Evolution 53:313-318.
-
(1999)
Evolution
, vol.53
, pp. 313-318
-
-
Hedrick, P.W.1
-
10
-
-
24644446846
-
A standardized genetic differentiation measure
-
Hedrick PW. 2005. A standardized genetic differentiation measure. Evolution 59:1633-1638.
-
(2005)
Evolution
, vol.59
, pp. 1633-1638
-
-
Hedrick, P.W.1
-
11
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T. 2002. The Ensembl genome database project. Nucleic Acids Res. 30:38-41.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
12
-
-
33748171462
-
A scan for signatures of positive selection in candidate loci for skin pigmentation in humans
-
Izagirre N, Garc?a I, Junquera C, De La Rua C, Alonso S. 2006. A scan for signatures of positive selection in candidate loci for skin pigmentation in humans. Mol Biol Evol. 23:1697-1706.
-
(2006)
Mol Biol Evol.
, vol.23
, pp. 1697-1706
-
-
Izagirre, N.1
Garca, I.2
Junquera, C.3
De La Rua, C.4
Alonso, S.5
-
13
-
-
38449096471
-
Partitioning diversity into independent alpha and beta components
-
Jost L. 2007. Partitioning diversity into independent alpha and beta components. Ecology 88:2427-2439.
-
(2007)
Ecology
, vol.88
, pp. 2427-2439
-
-
Jost, L.1
-
14
-
-
51649095312
-
GST and its relatives do not measure differentiation
-
Jost L. 2008. GST and its relatives do not measure differentiation. Mol Ecol. 17:4015-4026.
-
(2008)
Mol Ecol.
, vol.17
, pp. 4015-4026
-
-
Jost, L.1
-
15
-
-
69749093207
-
Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations
-
Kumar S, Suleski MP, Markov GJ, Lawrence S, Marco A, Filipski AJ. 2009. Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. Genome Res. 19: 1562-1569.
-
(2009)
Genome Res.
, vol.19
, pp. 1562-1569
-
-
Kumar, S.1
Suleski, M.P.2
Markov, G.J.3
Lawrence, S.4
Marco, A.5
Filipski, A.J.6
-
16
-
-
79960083275
-
Faster than neutral evolution of constrained sequences: The complex interplay of mutational biases and weak selection
-
Lawrie DS, Petrov DA,Messer PW. 2011. Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection. Genome Biol Evol. 3:383.
-
(2011)
Genome Biol Evol.
, vol.3
, pp. 383
-
-
Lawrie, D.S.1
Petrov, D.A.2
Messer, P.W.3
-
17
-
-
0015879546
-
Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
-
Lewontin R, Krakauer J. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74: 175-195.
-
(1973)
Genetics
, vol.74
, pp. 175-195
-
-
Lewontin, R.1
Krakauer, J.2
-
18
-
-
80055095261
-
Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome
-
Lohmueller KE, Albrechtsen A, Li Y, Kim SY, Korneliussen T, Vinckenbosch N, Tian G, Huerta-Sanchez E, Feder AF, Grarup N. 2011. Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome. PLoS Genet. 7: e1002326.
-
(2011)
PLoS Genet.
, vol.7
-
-
Lohmueller, K.E.1
Albrechtsen, A.2
Li, Y.3
Kim, S.Y.4
Korneliussen, T.5
Vinckenbosch, N.6
Tian, G.7
Huerta-Sanchez, E.8
Feder, A.F.9
Grarup, N.10
-
19
-
-
39749139577
-
Proportionally more deleterious genetic variation in European than in African populations
-
Lohmueller KE, Indap AR, Schmidt S, Boyko AR, Hernandez RD, Hubisz MJ, Sninsky JJ, White TJ, Sunyaev SR, Nielsen R. 2008. Proportionally more deleterious genetic variation in European than in African populations. Nature 451:994-997.
-
(2008)
Nature
, vol.451
, pp. 994-997
-
-
Lohmueller, K.E.1
Indap, A.R.2
Schmidt, S.3
Boyko, A.R.4
Hernandez, R.D.5
Hubisz, M.J.6
Sninsky, J.J.7
White, T.J.8
Sunyaev, S.R.9
Nielsen, R.10
-
20
-
-
29244465071
-
Variants associated with common disease are not unusually differentiated in frequency across populations
-
Lohmueller KE, Mauney MM, Reich D, Braverman JM. 2006. Variants associated with common disease are not unusually differentiated in frequency across populations. Am J Hum Genet. 78:130-136.
-
(2006)
Am J Hum Genet.
, vol.78
, pp. 130-136
-
-
Lohmueller, K.E.1
Mauney, M.M.2
Reich, D.3
Braverman, J.M.4
-
21
-
-
77952899741
-
Human genetic diversity and the nonexistence of biological races
-
Long JC, Kittles RA. 2009. Human genetic diversity and the nonexistence of biological races. Hum Biol. 81:777-798.
-
(2009)
Hum Biol.
, vol.81
, pp. 777-798
-
-
Long, J.C.1
Kittles, R.A.2
-
22
-
-
78650079113
-
Assessing population structure: FST and related measures
-
Meirmans PG, Hedrick PW. 2011. Assessing population structure: FST and related measures. Mol Ecol Resour. 11:5-18.
-
(2011)
Mol Ecol Resour.
, vol.11
, pp. 5-18
-
-
Meirmans, P.G.1
Hedrick, P.W.2
-
23
-
-
63749127623
-
Worldwide population differentiation at disease-associated SNPs
-
Myles S, Davison D, Barrett J, Stoneking M, Timpson N. 2008. Worldwide population differentiation at disease-associated SNPs. BMC Med Genomics. 1:22.
-
(2008)
BMC Med Genomics.
, vol.1
, pp. 22
-
-
Myles, S.1
Davison, D.2
Barrett, J.3
Stoneking, M.4
Timpson, N.5
-
24
-
-
0006919926
-
Analysis of gene diversity in subdivided populations
-
Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A. 70:3321.
-
(1973)
Proc Natl Acad Sci U S A.
, vol.70
, pp. 3321
-
-
Nei, M.1
-
25
-
-
0017666723
-
F-statistics and analysis of gene diversity in subdivided populations
-
Nei M. 1977. F-statistics and analysis of gene diversity in subdivided populations. Ann Hum Genet. 41:225-233.
-
(1977)
Ann Hum Genet.
, vol.41
, pp. 225-233
-
-
Nei, M.1
-
26
-
-
0020954623
-
Estimation of fixation indices and gene diversities
-
Nei M, Chesser R. 1983. Estimation of fixation indices and gene diversities. Ann Hum Genet. 47:253-259.
-
(1983)
Ann Hum Genet.
, vol.47
, pp. 253-259
-
-
Nei, M.1
Chesser, R.2
-
27
-
-
33847664554
-
Genetic evidence for the convergent evolution of light skin in Europeans and East Asians
-
Norton HL, Kittles RA, Parra E,McKeigue P,Mao X, Cheng K, Canfield VA, Bradley DG, McEvoy B, Shriver MD. 2007. Genetic evidence for the convergent evolution of light skin in Europeans and East Asians. Mol Biol Evol. 24:710-722.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 710-722
-
-
Norton, H.L.1
Kittles, R.A.2
Parra, E.3
McKeigue, P.4
Mao, X.5
Cheng, K.6
Canfield, V.A.7
Bradley, D.G.8
McEvoy, B.9
Shriver, M.D.10
-
28
-
-
66049157487
-
Signals of recent positive selection in a worldwide sample of human populations
-
Pickrell JK, CoopG, Novembre J, Kudaravalli S, Li JZ, Absher D, Srinivasan BS, Barsh GS, Myers RM, Feldman MW. 2009. Signals of recent positive selection in a worldwide sample of human populations. Genome Res. 19:826-837.
-
(2009)
Genome Res.
, vol.19
, pp. 826-837
-
-
Pickrell, J.K.1
Coop, G.2
Novembre, J.3
Kudaravalli, S.4
Li, J.Z.5
Absher, D.6
Srinivasan, B.S.7
Barsh, G.S.8
Myers, R.M.9
Feldman, M.W.10
-
29
-
-
33644747350
-
Levels of interpopulation differentiation among different functional classes of immunologically important genes
-
Ryan A, Mapp J, Moyna S, Mattiangeli V, Kelleher D, Bradley D, McManus R. 2006. Levels of interpopulation differentiation among different functional classes of immunologically important genes. Genes Immun. 7:179-183.
-
(2006)
Genes Immun.
, vol.7
, pp. 179-183
-
-
Ryan, A.1
Mapp, J.2
Moyna, S.3
Mattiangeli, V.4
Kelleher, D.5
Bradley, D.6
McManus, R.7
-
30
-
-
0031792256
-
Genetic evidence for a higher female migration rate in humans
-
Seielstad MT, Minch E, Cavalli-Sforza LL. 1998. Genetic evidence for a higher female migration rate in humans. Nat Genet. 20:278-280.
-
(1998)
Nat Genet.
, vol.20
, pp. 278-280
-
-
Seielstad, M.T.1
Minch, E.2
Cavalli-Sforza, L.L.3
-
31
-
-
33845894704
-
Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome
-
Subramanian S, Kumar S. 2006. Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome. BMC Genomics. 7:306.
-
(2006)
BMC Genomics.
, vol.7
, pp. 306
-
-
Subramanian, S.1
Kumar, S.2
-
32
-
-
12344264455
-
Implications of biogeography of human populations for 'race' and medicine
-
Tishkoff SA, Kidd KK. 2004. Implications of biogeography of human populations for 'race' and medicine. Nat Genet. 36:S21-S27.
-
(2004)
Nat Genet.
, vol.36
-
-
Tishkoff, S.A.1
Kidd, K.K.2
-
33
-
-
0021566877
-
Estimating F-statistics for the analysis of population structure
-
Weir B, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.1
Cockerham, C.C.2
-
34
-
-
79952449963
-
GST0 and D do not replace FST
-
Whitlock MC. 2011. GST0 and D do not replace FST. Mol Ecol. 20:1083-1091.
-
(2011)
Mol Ecol.
, vol.20
, pp. 1083-1091
-
-
Whitlock, M.C.1
-
35
-
-
0001024012
-
Isolation by distance
-
Wright S. 1943. Isolation by distance. Genetics 28:114-138.
-
(1943)
Genetics
, vol.28
, pp. 114-138
-
-
Wright, S.1
-
36
-
-
84890417804
-
The genetical structure of populations
-
Wright S. 1949. The genetical structure of populations. Ann Hum Genet. 15:323-354.
-
(1949)
Ann Hum Genet.
, vol.15
, pp. 323-354
-
-
Wright, S.1
-
37
-
-
78651374755
-
Different level of population differentiation among human genes
-
Wu DD, Zhang YP. 2011. Different level of population differentiation among human genes. BMC Evol Biol. 11:16002E
-
(2011)
BMC Evol Biol.
, vol.11
-
-
Wu, D.D.1
Zhang, Y.P.2
|