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Volumn 80, Issue 6, 2012, Pages 502-508

TNFA promoter alleles - frequencies and linkage with classical HLA genes in a South German Caucasian population

Author keywords

Human leukocyte antigen; Linkage disequilibrium; Promoter; Tumor necrosis factor; Tumor necrosis factor alpha

Indexed keywords

HLA A ANTIGEN; HLA ANTIGEN; HLA B ANTIGEN; HLA C ANTIGEN; HLA DRB1 ANTIGEN; TUMOR NECROSIS FACTOR ALPHA;

EID: 84869017760     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/tan.12025     Document Type: Article
Times cited : (2)

References (38)
  • 1
    • 0034254552 scopus 로고    scopus 로고
    • TNF-alpha gene polymorphism: clinical and biological implications
    • Hajeer AH, Hutchinson IV. TNF-alpha gene polymorphism: clinical and biological implications. Microsc Res Tech 2000: 50: 216-28.
    • (2000) Microsc Res Tech , vol.50 , pp. 216-228
    • Hajeer, A.H.1    Hutchinson, I.V.2
  • 2
    • 0034521301 scopus 로고    scopus 로고
    • TNF-alpha and its receptors mediate graft rejection and loss after liver transplantation
    • Grenz A, Schenk M, Zipfel A, Viebahn R. TNF-alpha and its receptors mediate graft rejection and loss after liver transplantation. Clin Chem Lab Med 2000: 38: 1183-5.
    • (2000) Clin Chem Lab Med , vol.38 , pp. 1183-1185
    • Grenz, A.1    Schenk, M.2    Zipfel, A.3    Viebahn, R.4
  • 3
    • 80052893511 scopus 로고    scopus 로고
    • Implications of TNF-α in the pathogenesis and management of GVHD
    • Levine JE. Implications of TNF-α in the pathogenesis and management of GVHD. Int J Hematol 2011: 93: 571-7.
    • (2011) Int J Hematol , vol.93 , pp. 571-577
    • Levine, J.E.1
  • 4
    • 3242711344 scopus 로고    scopus 로고
    • Novel polymorphisms and the definition of promoter 'alleles' of the tumor necrosis factor and lymphotoxin alpha loci: inclusion in HLA haplotypes
    • Posch PE, Cruz I, Bradshaw D, Medhekar BA. Novel polymorphisms and the definition of promoter 'alleles' of the tumor necrosis factor and lymphotoxin alpha loci: inclusion in HLA haplotypes. Genes Immunol 2003: 4: 547-58.
    • (2003) Genes Immunol , vol.4 , pp. 547-558
    • Posch, P.E.1    Cruz, I.2    Bradshaw, D.3    Medhekar, B.A.4
  • 5
    • 0031719942 scopus 로고    scopus 로고
    • Identification of three new single nucleotide polymorphisms in the human tumor necrosis factor-alpha gene promoter
    • Uglialoro AM, Turbay D, Pesavento PA et al. Identification of three new single nucleotide polymorphisms in the human tumor necrosis factor-alpha gene promoter. Tissue Antigens 1998: 52: 359-67.
    • (1998) Tissue Antigens , vol.52 , pp. 359-367
    • Uglialoro, A.M.1    Turbay, D.2    Pesavento, P.A.3
  • 6
    • 70350366111 scopus 로고    scopus 로고
    • A critical assessment of the factors affecting reporter gene assays for promoter SNP function: a reassessment of -308 TNF polymorphism function using a novel integrated reporter system
    • Karimi M, Goldie LC, Cruickshank MN, Moses EK, Abraham LJ. A critical assessment of the factors affecting reporter gene assays for promoter SNP function: a reassessment of -308 TNF polymorphism function using a novel integrated reporter system. Eur J Hum Genet 2009: 17: 1454-62.
    • (2009) Eur J Hum Genet , vol.17 , pp. 1454-1462
    • Karimi, M.1    Goldie, L.C.2    Cruickshank, M.N.3    Moses, E.K.4    Abraham, L.J.5
  • 7
    • 0032717296 scopus 로고    scopus 로고
    • Crohn's disease is associated with novel polymorphisms in the 5'-flanking region of the tumor necrosis factor gene
    • Negoro K, Kinouchi Y, Hiwatashi N et al. Crohn's disease is associated with novel polymorphisms in the 5'-flanking region of the tumor necrosis factor gene. Gastroenterology 1999: 117: 1062-8.
    • (1999) Gastroenterology , vol.117 , pp. 1062-1068
    • Negoro, K.1    Kinouchi, Y.2    Hiwatashi, N.3
  • 8
    • 4744354424 scopus 로고    scopus 로고
    • Relevance of IL10, TGFbeta1, TNFalpha, and IL4Ralpha gene polymorphisms in kidney transplantation: a collaborative transplant study report
    • Mytilineos J, Laux G, Opelz G. Relevance of IL10, TGFbeta1, TNFalpha, and IL4Ralpha gene polymorphisms in kidney transplantation: a collaborative transplant study report. Am J Transplant 2004: 4: 1684-90.
    • (2004) Am J Transplant , vol.4 , pp. 1684-1690
    • Mytilineos, J.1    Laux, G.2    Opelz, G.3
  • 9
    • 19044393917 scopus 로고    scopus 로고
    • TNF-alpha promoter single nucleotide polymorphisms are markers of human ancestry
    • Baena A, Leung JY, Sullivan AD et al. TNF-alpha promoter single nucleotide polymorphisms are markers of human ancestry. Genes Immunol 2002: 3: 482-7.
    • (2002) Genes Immunol , vol.3 , pp. 482-487
    • Baena, A.1    Leung, J.Y.2    Sullivan, A.D.3
  • 11
    • 0034795834 scopus 로고    scopus 로고
    • Sampling variance and distribution of the D' measure of overall gametic disequilibrium between multiallelic loci
    • Zapata C, Carollo C, Rodriguez S. Sampling variance and distribution of the D' measure of overall gametic disequilibrium between multiallelic loci. Ann Hum Genet 2001: 65 (Pt 4): 395-406.
    • (2001) Ann Hum Genet , vol.65 , Issue.PART 4 , pp. 395-406
    • Zapata, C.1    Carollo, C.2    Rodriguez, S.3
  • 12
    • 3042641333 scopus 로고    scopus 로고
    • 2LD, GENECOUNTING and HAP: Computer programs for linkage disequilibrium analysis
    • Zhao JH. 2LD, GENECOUNTING and HAP: Computer programs for linkage disequilibrium analysis. Bioinformatics 2004: 20: 1325-6.
    • (2004) Bioinformatics , vol.20 , pp. 1325-1326
    • Zhao, J.H.1
  • 13
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987: 4: 406-25.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 14
    • 1042304216 scopus 로고    scopus 로고
    • APE: analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004: 20: 289-90.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 15
    • 0035173378 scopus 로고    scopus 로고
    • dbSNP: the NCBI database of genetic variation
    • Sherry ST, Ward MH, Kholodov M et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 2001: 29: 308-11.
    • (2001) Nucleic Acids Res , vol.29 , pp. 308-311
    • Sherry, S.T.1    Ward, M.H.2    Kholodov, M.3
  • 16
    • 34548472899 scopus 로고    scopus 로고
    • High-resolution HLA alleles and haplotypes in the United States population
    • Maiers M, Gragert L, Klitz W. High-resolution HLA alleles and haplotypes in the United States population. Hum Immunol 2007: 68: 779-88.
    • (2007) Hum Immunol , vol.68 , pp. 779-788
    • Maiers, M.1    Gragert, L.2    Klitz, W.3
  • 17
    • 70350261756 scopus 로고    scopus 로고
    • The evolution and diversity of TNF block haplotypes in European, Asian and Australian Aboriginal populations
    • Valente FP, Tan CR, Temple SE et al. The evolution and diversity of TNF block haplotypes in European, Asian and Australian Aboriginal populations. Genes Immunol 2009: 10: 607-15.
    • (2009) Genes Immunol , vol.10 , pp. 607-615
    • Valente, F.P.1    Tan, C.R.2    Temple, S.E.3
  • 18
    • 70350453460 scopus 로고    scopus 로고
    • IL-10 and TNF-alpha promoter haplotypes are associated with childhood Crohn's disease location
    • Sanchez R, Levy E, Costea F, Sinnett D. IL-10 and TNF-alpha promoter haplotypes are associated with childhood Crohn's disease location. World J Gastroenterol 2009: 15: 3776-82.
    • (2009) World J Gastroenterol , vol.15 , pp. 3776-3782
    • Sanchez, R.1    Levy, E.2    Costea, F.3    Sinnett, D.4
  • 19
    • 81355147491 scopus 로고    scopus 로고
    • Association of polymorphisms in the promoter regions of TNF-α (-308) with susceptibility to hepatitis E virus and TNF-α (-1031) and IFN-γ (+874) genes with clinical outcome of hepatitis E infection in India
    • Mishra N, Arankalle VA. Association of polymorphisms in the promoter regions of TNF-α (-308) with susceptibility to hepatitis E virus and TNF-α (-1031) and IFN-γ (+874) genes with clinical outcome of hepatitis E infection in India. J Hepatol 2011: 55: 1227-34.
    • (2011) J Hepatol , vol.55 , pp. 1227-1234
    • Mishra, N.1    Arankalle, V.A.2
  • 20
    • 0032837736 scopus 로고    scopus 로고
    • A common functional polymorphism (C-->A substitution at position-863) in the promoter region of the tumour necrosis factor-alpha (TNF-alpha) gene associated with reduced circulating levels of TNF-alpha
    • Skoog T, van't Hooft FM, Kallin B et al. A common functional polymorphism (C-->A substitution at position-863) in the promoter region of the tumour necrosis factor-alpha (TNF-alpha) gene associated with reduced circulating levels of TNF-alpha. Hum Mol Genet 1999: 8: 1443-9.
    • (1999) Hum Mol Genet , vol.8 , pp. 1443-1449
    • Skoog, T.1    van't Hooft, F.M.2    Kallin, B.3
  • 21
    • 80053587422 scopus 로고    scopus 로고
    • TNFA-863 polymorphism is associated with a reduced risk of chronic obstructive pulmonary disease: a replication study
    • Córdoba-Lanús E, Baz-Dávila R, de-Torres JP et al. TNFA-863 polymorphism is associated with a reduced risk of chronic obstructive pulmonary disease: a replication study. BMC Med Genet 2011: 12: 132.
    • (2011) BMC Med Genet , vol.12 , pp. 132
    • Córdoba-Lanús, E.1    Baz-Dávila, R.2    De-Torres, J.P.3
  • 22
    • 0034459681 scopus 로고    scopus 로고
    • Functional consequences of a polymorphism affecting NF-kappaB p50-p50 binding to the TNF promoter region
    • Udalova IA, Richardson A, Denys A et al. Functional consequences of a polymorphism affecting NF-kappaB p50-p50 binding to the TNF promoter region. Mol Cell Biol 2000: 20: 9113-9.
    • (2000) Mol Cell Biol , vol.20 , pp. 9113-9119
    • Udalova, I.A.1    Richardson, A.2    Denys, A.3
  • 23
    • 0030954180 scopus 로고    scopus 로고
    • Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation
    • Wilson AG, Symons JA, McDowell TL, McDevitt HO, Duff GW. Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation. Proc Natl Acad Sci USA 1997: 94: 3195-9.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 3195-3199
    • Wilson, A.G.1    Symons, J.A.2    McDowell, T.L.3    McDevitt, H.O.4    Duff, G.W.5
  • 24
    • 0030862033 scopus 로고    scopus 로고
    • The -308 tumor necrosis factor-alpha promoter polymorphism effects transcription
    • Kroeger KM, Carville KS, Abraham LJ. The -308 tumor necrosis factor-alpha promoter polymorphism effects transcription. Mol Immunol 1997: 34: 391-9.
    • (1997) Mol Immunol , vol.34 , pp. 391-399
    • Kroeger, K.M.1    Carville, K.S.2    Abraham, L.J.3
  • 25
    • 80052373675 scopus 로고    scopus 로고
    • Association of tumor necrosis factor alpha and its receptor polymorphisms with rheumatoid arthritis in female patients
    • Hussein YM, Mohamed RH, Pasha HF, El-Shahawy EE, Alzahrani SS. Association of tumor necrosis factor alpha and its receptor polymorphisms with rheumatoid arthritis in female patients. Cell Immunol 2011: 271: 192-6.
    • (2011) Cell Immunol , vol.271 , pp. 192-196
    • Hussein, Y.M.1    Mohamed, R.H.2    Pasha, H.F.3    El-Shahawy, E.E.4    Alzahrani, S.S.5
  • 26
    • 84863987333 scopus 로고    scopus 로고
    • Association of TNF-α promoter-308 A/G polymorphism with susceptibility to systemic lupus erythematosus: a meta-analysis
    • Epub ahead of print].
    • Pan HF, Leng RX, Wang C et al. Association of TNF-α promoter-308 A/G polymorphism with susceptibility to systemic lupus erythematosus: a meta-analysis. Rheumatol Int 2011 [Epub ahead of print].
    • (2011) Rheumatol Int
    • Pan, H.F.1    Leng, R.X.2    Wang, C.3
  • 27
    • 79961009652 scopus 로고    scopus 로고
    • Functional study of TNF-α promoter polymorphisms: literature review and meta-analysis
    • Mekinian A, Tamouza R, Pavy S et al. Functional study of TNF-α promoter polymorphisms: literature review and meta-analysis. Eur Cytokine Netw 2011: 22: 88-102.
    • (2011) Eur Cytokine Netw , vol.22 , pp. 88-102
    • Mekinian, A.1    Tamouza, R.2    Pavy, S.3
  • 28
    • 34248144924 scopus 로고    scopus 로고
    • Frequencies of single nucleotide polymorphisms in genes regulating inflammatory responses in a community-based population
    • Huang HY, Thuita L, Strickland P, Hoffman SC, Comstock GW, Helzlsouer KJ. Frequencies of single nucleotide polymorphisms in genes regulating inflammatory responses in a community-based population. BMC Genet 2007: 8: 7.
    • (2007) BMC Genet , vol.8 , pp. 7
    • Huang, H.Y.1    Thuita, L.2    Strickland, P.3    Hoffman, S.C.4    Comstock, G.W.5    Helzlsouer, K.J.6
  • 29
    • 0037090431 scopus 로고    scopus 로고
    • Increased frequency of the uncommon tumor necrosis factor -857T allele in British and Dutch patients with sarcoidosis
    • Grutters JC, Sato H, Pantelidis P et al. Increased frequency of the uncommon tumor necrosis factor -857T allele in British and Dutch patients with sarcoidosis. Am J Respir Crit Care Med 2002: 165: 1119-24.
    • (2002) Am J Respir Crit Care Med , vol.165 , pp. 1119-1124
    • Grutters, J.C.1    Sato, H.2    Pantelidis, P.3
  • 30
    • 0028366342 scopus 로고
    • A polymorphic variation in a putative regulation box of the TNFA promoter region
    • D'Alfonso S, Richiardi PM. A polymorphic variation in a putative regulation box of the TNFA promoter region. Immunogenetics 1994: 39: 150-4.
    • (1994) Immunogenetics , vol.39 , pp. 150-154
    • D'Alfonso, S.1    Richiardi, P.M.2
  • 31
    • 34147115679 scopus 로고    scopus 로고
    • Genetic variation in tumor necrosis factor and lymphotoxin-alpha (TNF-LTA) and breast cancer risk
    • Gaudet MM, Egan KM, Lissowska J et al. Genetic variation in tumor necrosis factor and lymphotoxin-alpha (TNF-LTA) and breast cancer risk. Hum Genet 2007: 121 (3-4): 483-90.
    • (2007) Hum Genet , vol.121 , Issue.3-4 , pp. 483-490
    • Gaudet, M.M.1    Egan, K.M.2    Lissowska, J.3
  • 32
    • 66549084848 scopus 로고    scopus 로고
    • Breast Cancer Association Consortium. Five polymorphisms and breast cancer risk: results from the Breast Cancer Association Consortium
    • Gaudet MM, Milne RL, Cox A, Camp NJ, Goode EL Breast Cancer Association Consortium. Five polymorphisms and breast cancer risk: results from the Breast Cancer Association Consortium. Cancer Epidemiol Biomarkers Prev 2009: 18: 1610-6.
    • (2009) Cancer Epidemiol Biomarkers Prev , vol.18 , pp. 1610-1616
    • Gaudet, M.M.1    Milne, R.L.2    Cox, A.3    Camp, N.J.4    Goode, E.L.5
  • 33
    • 0033372492 scopus 로고    scopus 로고
    • Hardy-Weinberg testing for HLA class II (DRB1, DQA1, DQB1, and DPB1) loci in 26 human ethnic groups
    • Chen JJ, Hollenbach JA, Trachtenberg EA et al. Hardy-Weinberg testing for HLA class II (DRB1, DQA1, DQB1, and DPB1) loci in 26 human ethnic groups. Tissue Antigens 1999: 54: 533-42.
    • (1999) Tissue Antigens , vol.54 , pp. 533-542
    • Chen, J.J.1    Hollenbach, J.A.2    Trachtenberg, E.A.3
  • 34
    • 84870509980 scopus 로고    scopus 로고
    • Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine. (dbSNP Build ID: 135). Accession date: 20 June 2012.
    • Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine. (dbSNP Build ID: 135). Accession date: 20 June 2012. http://www.ncbi.nlm.nih.gov/SNP/
  • 35
    • 2442599990 scopus 로고    scopus 로고
    • Polymorphisms in the TNFA gene promoter region show evidence of strong linkage disequilibrium with HLA and are associated with delayed neutrophil engraftment in unrelated donor hematopoietic stem cell transplantation
    • Shaw BE, Maldonado H, Madrigal JA et al. Polymorphisms in the TNFA gene promoter region show evidence of strong linkage disequilibrium with HLA and are associated with delayed neutrophil engraftment in unrelated donor hematopoietic stem cell transplantation. Tissue Antigens 2004: 63: 401-11.
    • (2004) Tissue Antigens , vol.63 , pp. 401-411
    • Shaw, B.E.1    Maldonado, H.2    Madrigal, J.A.3
  • 36
    • 0038175152 scopus 로고    scopus 로고
    • Haplotypic analysis of the TNF locus by association efficiency and entropy
    • Ackerman H, Usen S, Mott R et al. Haplotypic analysis of the TNF locus by association efficiency and entropy. Genome Biol 2003: 4: R24.
    • (2003) Genome Biol , vol.4
    • Ackerman, H.1    Usen, S.2    Mott, R.3
  • 37
    • 0033790227 scopus 로고    scopus 로고
    • The implications of intergenic polymorphism for major histocompatibility complex evolution
    • O'hUigin C, Satta Y, Hausmann A, Dawkins RL, Klein J. The implications of intergenic polymorphism for major histocompatibility complex evolution. Genetics 2000: 156: 867-77.
    • (2000) Genetics , vol.156 , pp. 867-877
    • O'Huigin, C.1    Satta, Y.2    Hausmann, A.3    Dawkins, R.L.4    Klein, J.5
  • 38
    • 79551639467 scopus 로고    scopus 로고
    • HLA DNA sequence variation among human populations: molecular signatures of demographic and selective events
    • Buhler S, Sanchez-Mazas A. HLA DNA sequence variation among human populations: molecular signatures of demographic and selective events. PLoS One 2011; 6: e14643.
    • (2011) PLoS One , vol.6
    • Buhler, S.1    Sanchez-Mazas, A.2


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