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Volumn 13, Issue 1, 2012, Pages

Pre-capture multiplexing improves efficiency and cost-effectiveness of targeted genomic enrichment

Author keywords

Genomics; Indexing; Massively parallel sequencing; Next generation sequencing; Post capture multiplexing; Pre capture multiplexing; Sequence capture; Targeted genomic enrichment

Indexed keywords

OLIGONUCLEOTIDE; REAGENT;

EID: 84868685065     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-618     Document Type: Article
Times cited : (18)

References (22)
  • 1
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies -- the next generation
    • Metzker ML. Sequencing technologies -- the next generation. Nat Rev Genet 2009, 11(1):31-46.
    • (2009) Nat Rev Genet , vol.11 , Issue.1 , pp. 31-46
    • Metzker, M.L.1
  • 4
    • 77955439715 scopus 로고    scopus 로고
    • Detection of inherited mutations for breast and ovarian cancer using genomic capture and massively parallel sequencing
    • 10.1073/pnas.1007983107, 2906584, 20616022
    • Walsh T, Lee MK, Casadei S, Thornton AM, Stray SM, Pennil C, Nord AS, Mandell JB, Swisher EM, King M. Detection of inherited mutations for breast and ovarian cancer using genomic capture and massively parallel sequencing. Proc Natl Acad Sci U S A 2010, 107(28):12629-12633. 10.1073/pnas.1007983107, 2906584, 20616022.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.28 , pp. 12629-12633
    • Walsh, T.1    Lee, M.K.2    Casadei, S.3    Thornton, A.M.4    Stray, S.M.5    Pennil, C.6    Nord, A.S.7    Mandell, J.B.8    Swisher, E.M.9    King, M.10
  • 8
    • 79960556069 scopus 로고    scopus 로고
    • Genomic DNA pooling strategy for next-generation sequencing-based rare variant discovery in abdominal aortic aneurysm regions of interest--challenges and limitations
    • 10.1007/s12265-011-9263-5, 3099005, 21360310
    • Harakalova M, Nijman IJ, Medic J, Mokry M, Renkens I, Blankensteijn JD, Kloosterman W, Baas AF, Cuppen E. Genomic DNA pooling strategy for next-generation sequencing-based rare variant discovery in abdominal aortic aneurysm regions of interest--challenges and limitations. J Cardiovasc Transl Res 2011, 4(3):271-280. 10.1007/s12265-011-9263-5, 3099005, 21360310.
    • (2011) J Cardiovasc Transl Res , vol.4 , Issue.3 , pp. 271-280
    • Harakalova, M.1    Nijman, I.J.2    Medic, J.3    Mokry, M.4    Renkens, I.5    Blankensteijn, J.D.6    Kloosterman, W.7    Baas, A.F.8    Cuppen, E.9
  • 9
    • 79953325544 scopus 로고    scopus 로고
    • Efficient and cost effective population resequencing by pooling and in-solution hybridization
    • 10.1371/journal.pone.0018353, 3068187, 21479135
    • Bansal V, Tewhey R, LeProust EM, Schork NJ. Efficient and cost effective population resequencing by pooling and in-solution hybridization. PLoS One 2011, 6(3):e18353. 10.1371/journal.pone.0018353, 3068187, 21479135.
    • (2011) PLoS One , vol.6 , Issue.3
    • Bansal, V.1    Tewhey, R.2    LeProust, E.M.3    Schork, N.J.4
  • 12
    • 78349251346 scopus 로고    scopus 로고
    • Combining target enrichment with barcode multiplexing for high throughput SNP discovery
    • 10.1186/1471-2164-11-641, 3012606, 21083938
    • Cummings N, King R, Rickers A, Kaspi A, Lunke S, Haviv I, Jowett JBM. Combining target enrichment with barcode multiplexing for high throughput SNP discovery. BMC Genomics 2010, 11:641. 10.1186/1471-2164-11-641, 3012606, 21083938.
    • (2010) BMC Genomics , vol.11 , pp. 641
    • Cummings, N.1    King, R.2    Rickers, A.3    Kaspi, A.4    Lunke, S.5    Haviv, I.6    Jowett, J.B.M.7
  • 13
    • 79951827407 scopus 로고    scopus 로고
    • Multiplex target enrichment using DNA indexing for ultra-high throughput SNP detection
    • 10.1093/dnares/dsq029, 3041504, 21163834
    • Kenny EM, Cormican P, Gilks WP, Gates AS, O'Dushlaine CT, Pinto C, Corvin AP, Gill M, Morris DW. Multiplex target enrichment using DNA indexing for ultra-high throughput SNP detection. DNA Res 2011, 18(1):31-38. 10.1093/dnares/dsq029, 3041504, 21163834.
    • (2011) DNA Res , vol.18 , Issue.1 , pp. 31-38
    • Kenny, E.M.1    Cormican, P.2    Gilks, W.P.3    Gates, A.S.4    O'Dushlaine, C.T.5    Pinto, C.6    Corvin, A.P.7    Gill, M.8    Morris, D.W.9
  • 15
    • 78049321160 scopus 로고    scopus 로고
    • Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples
    • Nijman IJ, Mokry M, Boxtel R, Toonen P, Bruijn E, Cuppen E. Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples. Nature Methods 2011, 7(11):913-915a.
    • (2011) Nature Methods , vol.7 , Issue.11
    • Nijman, I.J.1    Mokry, M.2    Boxtel, R.3    Toonen, P.4    Bruijn, E.5    Cuppen, E.6
  • 17
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • 10.1093/bioinformatics/btp324, 2705234, 19451168
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 19
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/Map format and SAMtools
    • 10.1093/bioinformatics/btp352, 2723002, 19505943, 1000 Genome Project Data Processing Subgroup
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, . 1000 Genome Project Data Processing Subgroup The sequence alignment/Map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943, 1000 Genome Project Data Processing Subgroup.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6    Marth, G.7    Abecasis, G.8    Durbin, R.9
  • 20
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • 10.1093/bioinformatics/btq033, 2832824, 20110278
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26(6):841-842. 10.1093/bioinformatics/btq033, 2832824, 20110278.
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 22
    • 79953855362 scopus 로고    scopus 로고
    • Accurate and exact CNV identification from targeted high-throughput sequence data
    • 10.1186/1471-2164-12-184, 3088570, 21486468
    • Nord AS, Lee M, King M-C, Walsh T. Accurate and exact CNV identification from targeted high-throughput sequence data. BMC Genomics 2011, 12(1):184. 10.1186/1471-2164-12-184, 3088570, 21486468.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 184
    • Nord, A.S.1    Lee, M.2    King, M.-C.3    Walsh, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.